Wall clock time and date at job start Tue Mar 31 2020 11:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47364 * 2 1 4 4 C 1.52994 * 109.47122 * 239.99988 * 2 1 3 5 5 C 1.50700 * 109.47351 * 63.26150 * 4 2 1 6 6 H 1.08000 * 120.00053 * 4.87458 * 5 4 2 7 7 C 1.37878 * 120.00357 * 184.87749 * 5 4 2 8 8 N 1.31516 * 119.99596 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00195 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46723 * 90.00055 * 9 7 5 11 11 H 1.48497 * 109.47104 * 210.00045 * 9 7 5 12 12 H 1.48501 * 109.47104 * 330.00215 * 9 7 5 13 13 N 1.46905 * 109.47193 * 120.00038 * 2 1 3 14 14 C 1.47007 * 111.00095 * 174.13418 * 13 2 1 15 15 C 1.53093 * 109.26095 * 182.39206 * 14 13 2 16 16 O 1.43019 * 109.25879 * 303.15119 * 15 14 13 17 17 C 1.43019 * 113.73540 * 58.66378 * 16 15 14 18 18 H 1.09005 * 109.54018 * 61.29267 * 17 16 15 19 19 C 1.50703 * 109.50438 * 181.39378 * 17 16 15 20 20 C 1.33352 * 125.18874 * 219.78389 * 19 17 16 21 21 C 1.38468 * 114.92670 * 179.97438 * 20 19 17 22 22 C 1.33506 * 114.88780 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 125.21007 * 180.02562 * 22 21 20 24 24 S 1.75881 * 125.18665 * 39.48582 * 19 17 16 25 25 C 1.47020 * 110.99703 * 297.76908 * 13 2 1 26 26 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47211 * 60.00257 * 1 2 3 28 28 H 1.08998 * 109.47236 * 300.00265 * 1 2 3 29 29 H 1.08997 * 109.47416 * 183.26602 * 4 2 1 30 30 H 1.09008 * 109.47293 * 303.26444 * 4 2 1 31 31 H 0.97009 * 119.99657 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.50740 * 302.32823 * 14 13 2 33 33 H 1.09001 * 109.50578 * 62.45333 * 14 13 2 34 34 H 1.08999 * 109.50728 * 183.21743 * 15 14 13 35 35 H 1.08996 * 109.50899 * 63.08039 * 15 14 13 36 36 H 1.07997 * 122.53450 * 359.96074 * 20 19 17 37 37 H 1.08006 * 122.55942 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.50314 * 297.53887 * 25 13 2 39 39 H 1.08999 * 109.50847 * 57.62911 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6047 0.0343 -2.4784 6 1 1.0911 0.9790 -2.3779 7 6 1.8623 -0.4805 -3.7313 8 7 2.4882 -1.6307 -3.8536 9 14 1.3221 0.4557 -5.2548 10 1 2.4076 1.3748 -5.6817 11 1 1.0287 -0.5054 -6.3482 12 1 0.1008 1.2419 -4.9457 13 7 2.0197 -0.6925 1.1995 14 6 3.4825 -0.8348 1.1654 15 6 3.9432 -1.6122 2.4012 16 8 3.4922 -0.9369 3.5785 17 6 2.0720 -0.7814 3.6446 18 1 1.5979 -1.7629 3.6556 19 6 1.7058 -0.0318 4.8997 20 6 0.6590 -0.3040 5.6796 21 6 0.5229 0.5215 6.7829 22 6 1.4604 1.4650 6.8977 23 17 1.5479 2.6392 8.1734 24 16 2.5982 1.3309 5.5631 25 6 1.5924 0.0043 2.4215 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 3.1284 -0.7722 -1.2204 30 1 1.6296 -1.7307 -1.2790 31 1 2.6691 -1.9930 -4.7351 32 1 3.7747 -1.3758 0.2652 33 1 3.9442 0.1526 1.1634 34 1 5.0316 -1.6706 2.4095 35 1 3.5241 -2.6180 2.3756 36 1 -0.0306 -1.1075 5.4667 37 1 -0.2805 0.4106 7.4963 38 1 2.0240 1.0050 2.4395 39 1 0.5049 0.0766 2.4379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331330385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:55 Heat of formation + Delta-G solvation = -30.650826 kcal Electronic energy + Delta-G solvation = -21721.749577 eV Core-core repulsion = 18395.299143 eV Total energy + Delta-G solvation = -3326.450434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94847 -38.96899 -37.89692 -37.49128 -35.04617 -33.34193 -32.72645 -30.10818 -28.64739 -27.42152 -25.95733 -24.61057 -23.91678 -21.96941 -20.98689 -20.31401 -18.93510 -18.59610 -17.36249 -16.95939 -16.76569 -16.54839 -16.05092 -15.85716 -15.38757 -15.14799 -14.74279 -14.55488 -14.37055 -14.20465 -13.79977 -13.49074 -13.31723 -13.04271 -12.90609 -12.79530 -12.66947 -12.57275 -12.42227 -12.20292 -12.08131 -11.82778 -11.67423 -11.48710 -11.23545 -11.07663 -10.70633 -10.51217 -9.60517 -9.56333 -9.31465 -8.18606 -6.27466 -0.26157 0.07984 0.85932 1.21537 1.40635 1.40921 1.51825 1.57523 2.40212 2.64129 2.85917 3.15414 3.71963 3.83850 4.00037 4.08655 4.18149 4.25222 4.28853 4.38233 4.49809 4.56152 4.57502 4.67843 4.76158 4.86399 4.90262 4.93391 5.07058 5.11102 5.19126 5.31744 5.41417 5.47137 5.67255 5.76977 6.00097 6.05960 6.17837 6.32559 6.87521 7.40404 8.93270 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.026842 B = 0.002753 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.877034 B =10166.555147 C =10607.157416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.095 3.905 3 H 0.017 0.983 4 C 0.040 3.960 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.263 1.263 13 N -0.535 5.535 14 C 0.014 3.986 15 C 0.075 3.925 16 O -0.391 6.391 17 C 0.169 3.831 18 H 0.098 0.902 19 C -0.177 4.177 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.165 4.165 23 Cl -0.013 7.013 24 S 0.156 5.844 25 C 0.031 3.969 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.063 0.937 29 H -0.005 1.005 30 H -0.001 1.001 31 H 0.262 0.738 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.028 0.972 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 3.521 23.083 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 H 0.035 0.965 4 C 0.003 3.997 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.187 1.187 13 N -0.260 5.260 14 C -0.114 4.114 15 C -0.002 4.002 16 O -0.310 6.310 17 C 0.109 3.891 18 H 0.116 0.884 19 C -0.295 4.295 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.309 4.309 23 Cl 0.015 6.985 24 S 0.419 5.581 25 C -0.098 4.098 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.013 0.987 30 H 0.017 0.983 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.138 0.862 35 H 0.087 0.913 36 H 0.192 0.808 37 H 0.191 0.809 38 H 0.046 0.954 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.445 3.920 22.808 23.187 hybrid contribution -0.913 0.445 -0.944 1.387 sum -2.358 4.365 21.864 22.419 Atomic orbital electron populations 1.21645 0.93519 1.01691 1.01042 1.21583 0.96382 0.94020 0.89242 0.96537 1.19019 0.94539 0.95004 0.91120 1.21551 1.37276 1.06357 0.91886 0.92313 1.25863 0.95310 0.95838 1.02413 1.70093 1.42652 1.20021 1.24275 0.85541 0.78950 0.78367 0.78772 1.20139 1.20865 1.18732 1.62293 1.10848 1.50893 1.01950 1.22837 0.88401 0.99735 1.00457 1.22749 1.00747 0.94959 0.81700 1.87954 1.21210 1.79409 1.42447 1.20376 0.82370 0.97707 0.88605 0.88403 1.24290 1.01638 1.01896 1.01714 1.20213 0.98599 1.02119 0.93343 1.20427 1.00091 0.94165 0.99843 1.25518 1.04347 1.01636 0.99399 1.98363 1.97780 1.55384 1.46959 1.84754 1.27282 1.29104 1.16937 1.22831 1.02343 0.95156 0.89467 0.92947 0.92741 0.91830 0.98683 0.98263 0.92876 0.90215 0.95471 0.86240 0.91306 0.80790 0.80882 0.95414 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.82 71.98 0.63 -3.79 16 2 C 0.10 3.90 2.11 44.91 0.09 3.99 16 3 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 4 C 0.04 2.08 4.16 29.85 0.12 2.20 16 5 C -0.53 -29.42 8.30 25.60 0.21 -29.21 16 6 H 0.06 3.13 7.13 -2.91 -0.02 3.11 16 7 C 0.00 0.21 5.46 84.65 0.46 0.67 16 8 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.53 -18.58 4.59 -870.00 -4.00 -22.58 16 14 C 0.01 0.47 5.19 86.31 0.45 0.92 16 15 C 0.07 1.97 7.01 72.01 0.50 2.48 16 16 O -0.39 -10.63 10.27 -148.98 -1.53 -12.16 16 17 C 0.17 4.15 3.24 29.88 0.10 4.25 16 18 H 0.10 2.22 8.12 -2.38 -0.02 2.20 16 19 C -0.18 -3.82 5.49 24.58 0.13 -3.69 16 20 C -0.11 -1.90 10.04 21.22 0.21 -1.68 16 21 C -0.11 -1.81 10.13 21.25 0.22 -1.60 16 22 C -0.17 -3.15 7.10 66.75 0.47 -2.68 16 23 Cl -0.01 -0.23 29.29 -2.72 -0.08 -0.31 16 24 S 0.16 3.45 23.11 -56.49 -1.31 2.14 16 25 C 0.03 0.87 4.65 86.31 0.40 1.27 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 2.12 6.93 -2.39 -0.02 2.11 16 28 H 0.06 1.89 6.40 -2.39 -0.02 1.87 16 29 H 0.00 -0.27 6.08 -2.39 -0.01 -0.29 16 30 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 32 H 0.08 3.05 6.01 -2.38 -0.01 3.04 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 2.61 6.24 -2.39 -0.01 2.59 16 Total: -1.00 -62.92 341.43 0.47 -62.45 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.05 Total: 6.91 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 4.02 Total: -26.86 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -3.71 Total: -77.89 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.53 Total: -12.16 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.31 Total: 2.14 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -62.92 0.47 -62.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331330385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.801 kcal (2) G-P(sol) polarization free energy of solvation -62.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds