Wall clock time and date at job start Tue Mar 31 2020 11:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47684 * 2 1 4 4 C 1.53005 * 109.46980 * 120.00223 * 2 1 3 5 5 C 1.50701 * 109.46986 * 296.60957 * 4 2 1 6 6 H 1.08007 * 119.99716 * 4.29472 * 5 4 2 7 7 C 1.37876 * 120.00348 * 184.29324 * 5 4 2 8 8 N 1.31514 * 119.99915 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00443 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46576 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47259 * 119.99705 * 9 7 5 12 12 H 1.48496 * 109.47258 * 240.00078 * 9 7 5 13 13 N 1.46898 * 109.47498 * 239.99583 * 2 1 3 14 14 C 1.47105 * 110.99207 * 185.79825 * 13 2 1 15 15 C 1.53097 * 109.21134 * 177.63054 * 14 13 2 16 16 O 1.43017 * 109.29428 * 56.82756 * 15 14 13 17 17 C 1.43020 * 113.73876 * 301.30863 * 16 15 14 18 18 H 1.09001 * 109.50787 * 298.73805 * 17 16 15 19 19 C 1.50698 * 109.50536 * 178.64948 * 17 16 15 20 20 C 1.33348 * 125.19128 * 144.72571 * 19 17 16 21 21 C 1.38461 * 114.93128 * 179.79484 * 20 19 17 22 22 C 1.33502 * 114.88612 * 0.48936 * 21 20 19 23 23 Cl 1.73600 * 125.21078 * 179.75759 * 22 21 20 24 24 S 1.75879 * 109.58032 * 359.74204 * 22 21 20 25 25 C 1.47014 * 110.99729 * 62.14124 * 13 2 1 26 26 H 1.08996 * 109.47018 * 300.00197 * 1 2 3 27 27 H 1.09004 * 109.46908 * 60.00081 * 1 2 3 28 28 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47501 * 56.61015 * 4 2 1 30 30 H 1.08999 * 109.47188 * 176.61651 * 4 2 1 31 31 H 0.96995 * 120.00253 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.56069 * 57.68665 * 14 13 2 33 33 H 1.09005 * 109.49658 * 297.52917 * 14 13 2 34 34 H 1.09002 * 109.50623 * 296.87450 * 15 14 13 35 35 H 1.08994 * 109.50719 * 176.78382 * 15 14 13 36 36 H 1.08000 * 122.53015 * 359.97077 * 20 19 17 37 37 H 1.08012 * 122.55799 * 180.23010 * 21 20 19 38 38 H 1.09005 * 109.50353 * 62.45882 * 25 13 2 39 39 H 1.09004 * 109.54638 * 302.35638 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6074 0.0359 2.4783 6 1 0.9689 0.9018 2.3822 7 6 2.0266 -0.3765 3.7253 8 7 2.8044 -1.4305 3.8423 9 14 1.4898 0.5617 5.2489 10 1 0.6232 1.6996 4.8496 11 1 0.7318 -0.3456 6.1475 12 1 2.6871 1.0766 5.9606 13 7 2.0198 -0.6926 -1.1993 14 6 3.4837 -0.8334 -1.1657 15 6 3.9435 -1.6104 -2.4020 16 8 3.4908 -0.9363 -3.5793 17 6 2.0704 -0.7828 -3.6446 18 1 1.5982 -1.7652 -3.6542 19 6 1.7023 -0.0352 -4.9003 20 6 0.6096 -0.2541 -5.6325 21 6 0.4793 0.5607 -6.7445 22 6 1.4731 1.4347 -6.9200 23 17 1.5842 2.5752 -8.2241 24 16 2.6521 1.2541 -5.6276 25 6 1.5907 0.0030 -2.4214 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6279 -1.7299 1.2802 30 1 3.1283 -0.7742 1.2195 31 1 3.0996 -1.7205 4.7195 32 1 3.7777 -1.3737 -0.2659 33 1 3.9442 0.1546 -1.1647 34 1 3.5258 -2.6169 -2.3756 35 1 5.0319 -1.6683 -2.4116 36 1 -0.1201 -1.0078 -5.3760 37 1 -0.3601 0.4914 -7.4207 38 1 2.0210 1.0043 -2.4404 39 1 0.5031 0.0739 -2.4379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331330387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:08 Heat of formation + Delta-G solvation = -13.833194 kcal Electronic energy + Delta-G solvation = -21722.374996 eV Core-core repulsion = 18396.653829 eV Total energy + Delta-G solvation = -3325.721167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.75249 -38.10591 -36.84749 -36.35199 -33.10977 -32.26995 -31.07425 -28.91258 -26.97933 -26.15040 -24.70159 -23.13125 -22.70750 -20.69501 -19.80579 -19.10994 -17.89430 -16.73707 -16.25884 -15.79734 -15.62974 -14.83727 -14.77808 -14.44532 -14.20217 -13.78251 -13.71212 -13.54058 -13.08619 -12.92237 -12.53837 -12.11706 -11.91158 -11.68301 -11.60213 -11.36658 -11.33325 -11.14421 -10.95166 -10.85435 -10.80654 -10.48087 -10.30399 -9.97959 -9.63746 -9.26806 -9.09945 -8.73804 -8.69022 -8.38905 -7.88213 -6.05128 -4.06687 0.56872 0.90295 1.68154 2.01612 2.35281 3.27705 3.35725 3.39037 3.64101 4.15823 4.44710 4.76241 4.94090 5.04642 5.16007 5.19461 5.28922 5.31350 5.45976 5.53781 5.65138 5.69051 5.86272 5.88816 5.92846 6.04347 6.07682 6.19974 6.25710 6.28578 6.60337 6.81653 7.02567 7.12302 7.38220 7.45330 7.68751 7.79090 7.99121 8.37504 8.99188 9.57060 11.06347 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.002749 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.536172 B =10182.376734 C =10603.567908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.086 3.914 3 H 0.029 0.971 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.013 3.987 15 C 0.067 3.933 16 O -0.385 6.385 17 C 0.164 3.836 18 H 0.088 0.912 19 C -0.158 4.158 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.164 4.164 23 Cl -0.021 7.021 24 S 0.192 5.808 25 C 0.028 3.972 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.037 0.963 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 2.749 -21.621 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 H 0.047 0.953 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.257 5.257 14 C -0.115 4.115 15 C -0.010 4.010 16 O -0.304 6.304 17 C 0.104 3.896 18 H 0.106 0.894 19 C -0.277 4.277 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.308 4.308 23 Cl 0.008 6.992 24 S 0.456 5.544 25 C -0.102 4.102 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.056 0.944 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.482 3.078 -21.401 21.627 hybrid contribution -1.397 0.645 0.653 1.671 sum -1.879 3.722 -20.748 21.163 Atomic orbital electron populations 1.21762 0.95170 1.01670 1.00208 1.21874 0.95124 0.95406 0.89707 0.95279 1.19219 0.96450 0.95874 0.89177 1.21226 1.30454 1.12792 0.91116 0.92529 1.24985 0.95138 0.95119 0.99071 1.69965 1.34949 1.24717 1.23671 0.86562 0.78438 0.79943 0.83220 1.19763 1.20999 1.21057 1.62365 1.10357 1.51062 1.01908 1.22880 0.88740 1.00142 0.99716 1.22756 0.99447 0.95434 0.83326 1.87934 1.20331 1.79440 1.42719 1.20398 0.82943 0.97408 0.88838 0.89424 1.24418 0.99755 1.02070 1.01460 1.19869 0.98940 1.02354 0.94717 1.20114 0.99492 0.95910 0.99384 1.25432 1.03397 1.02484 0.99476 1.98358 1.97766 1.57876 1.45218 1.84667 1.21790 1.32038 1.15932 1.22762 1.01723 0.95618 0.90051 0.91366 0.94976 0.92566 0.95926 0.95932 0.93035 0.87753 0.94418 0.92057 0.88351 0.83202 0.83420 0.94439 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.81 37.16 0.33 -2.07 16 2 C 0.09 1.73 2.12 -67.71 -0.14 1.58 16 3 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.03 0.74 4.17 -27.88 -0.12 0.62 16 5 C -0.52 -14.02 8.47 -34.44 -0.29 -14.31 16 6 H 0.06 1.50 6.79 -52.48 -0.36 1.14 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.53 -9.22 4.59 -226.25 -1.04 -10.26 16 14 C 0.01 0.22 5.20 -3.66 -0.02 0.20 16 15 C 0.07 0.91 7.01 37.21 0.26 1.17 16 16 O -0.38 -5.47 10.19 -35.23 -0.36 -5.83 16 17 C 0.16 2.15 3.24 -27.83 -0.09 2.06 16 18 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.16 -1.87 5.52 -36.02 -0.20 -2.07 16 20 C -0.13 -1.29 10.04 -41.21 -0.41 -1.70 16 21 C -0.12 -1.12 10.13 -41.16 -0.42 -1.53 16 22 C -0.16 -1.73 7.10 29.08 0.21 -1.53 16 23 Cl -0.02 -0.20 29.29 -51.86 -1.52 -1.72 16 24 S 0.19 2.23 23.03 -107.50 -2.48 -0.25 16 25 C 0.03 0.41 4.65 -3.71 -0.02 0.39 16 26 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 27 H 0.03 0.50 6.40 -51.93 -0.33 0.17 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.02 0.59 6.08 -51.93 -0.32 0.27 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.10 1.90 6.01 -51.93 -0.31 1.59 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.25 6.24 -51.93 -0.32 0.92 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -28.93 341.00 -10.90 -39.84 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.35 Total: -2.09 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.01 Total: -15.67 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.30 Total: -35.61 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.36 Total: -5.83 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.48 Total: -0.25 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.93 -10.90 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331330387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.004 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds