Wall clock time and date at job start Tue Mar 31 2020 11:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 O 1.21285 * 119.99764 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00090 * 180.02562 * 5 4 2 8 8 S 1.65602 * 119.99908 * 179.97438 * 7 5 4 9 9 O 1.42097 * 104.27708 * 181.07220 * 8 7 5 10 10 O 1.42103 * 104.27865 * 308.92909 * 8 7 5 11 11 C 1.81399 * 104.44803 * 64.99965 * 8 7 5 12 12 C 1.53000 * 109.47085 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47227 * 180.02562 * 12 11 8 14 14 H 1.07999 * 119.99935 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00139 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00199 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47076 * 89.99702 * 17 15 13 19 19 H 1.48495 * 109.47235 * 210.00302 * 17 15 13 20 20 H 1.48502 * 109.47036 * 330.00393 * 17 15 13 21 21 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 22 22 C 1.34513 * 125.78694 * 239.71617 * 21 2 1 23 23 C 1.41387 * 106.84052 * 179.88546 * 22 21 2 24 24 C 1.34511 * 106.83723 * 0.37364 * 23 22 21 25 25 O 1.34302 * 108.42549 * 359.77020 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 0.96995 * 120.00069 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47092 * 299.99575 * 11 8 7 33 33 H 1.08996 * 109.47254 * 60.00072 * 11 8 7 34 34 H 1.09008 * 109.46942 * 299.99681 * 12 11 8 35 35 H 1.09000 * 109.47633 * 59.99764 * 12 11 8 36 36 H 0.96995 * 119.99959 * 180.02562 * 16 15 13 37 37 H 1.07994 * 126.58203 * 0.02562 * 22 21 2 38 38 H 1.07994 * 126.57836 * 180.16152 * 23 22 21 39 39 H 1.08000 * 125.78899 * 179.75138 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9845 -0.3920 -3.7001 8 16 1.5459 0.4629 -5.0489 9 8 2.0464 -0.3095 -6.1315 10 8 0.1509 0.6807 -4.8876 11 6 2.4546 2.0267 -4.9089 12 6 2.1288 2.9152 -6.1111 13 6 2.8842 4.2140 -5.9952 14 1 3.5316 4.3885 -5.1485 15 6 2.7481 5.1801 -6.9696 16 7 3.4069 6.3137 -6.8681 17 14 1.6279 4.8786 -8.4337 18 1 0.2589 5.3586 -8.1167 19 1 2.1488 5.6125 -9.6149 20 1 1.5855 3.4247 -8.7334 21 6 2.0324 -0.7105 1.2305 22 6 2.8134 -0.1736 2.1850 23 6 3.0387 -1.1851 3.1468 24 6 2.3887 -2.2820 2.7183 25 8 1.7810 -1.9887 1.5571 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 2.4877 -1.2162 -3.7908 32 1 2.1615 2.5362 -3.9911 33 1 3.5253 1.8239 -4.8860 34 1 2.4216 2.4058 -7.0293 35 1 1.0581 3.1179 -6.1337 36 1 3.3109 6.9934 -7.5534 37 1 3.1933 0.8370 2.2127 38 1 3.6235 -1.0953 4.0503 39 1 2.3606 -3.2367 3.2223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331696895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:21 Heat of formation + Delta-G solvation = -106.213003 kcal Electronic energy + Delta-G solvation = -23937.069739 eV Core-core repulsion = 20166.633518 eV Total energy + Delta-G solvation = -3770.436221 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.86465 -40.37333 -36.88168 -35.79988 -35.53362 -34.57627 -33.97063 -33.19541 -31.51408 -29.34884 -28.18862 -26.02680 -23.72941 -22.09661 -21.64308 -21.29900 -20.17854 -19.43753 -18.07572 -17.88961 -17.28602 -16.88388 -16.24931 -16.17233 -15.53348 -15.32927 -15.00681 -14.63555 -14.33556 -13.94860 -13.68346 -13.46558 -13.08936 -12.94860 -12.83595 -12.79829 -12.44745 -11.95376 -11.90212 -11.79927 -11.76397 -11.61959 -11.29896 -11.29069 -11.25622 -10.91452 -10.45628 -10.29142 -10.18799 -10.09865 -9.65735 -9.36934 -8.74333 -8.66673 -6.16880 -4.18414 0.34427 1.45188 1.96062 2.34317 2.57064 2.72616 3.26944 3.33922 3.37344 3.83097 4.00618 4.31266 4.35453 4.42180 4.54845 4.61523 4.76179 4.81017 4.88962 5.06877 5.14503 5.28869 5.29370 5.44998 5.51282 5.52611 5.61661 5.71458 5.82787 5.86248 6.17452 6.22081 6.23887 6.50696 6.78311 6.87026 6.91205 7.35114 7.52920 8.35674 8.84031 9.42249 10.95455 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.002984 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.207102 B = 9381.738754 C =10049.981750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.003 3.997 3 H 0.114 0.886 4 C -0.141 4.141 5 C 0.535 3.465 6 O -0.485 6.485 7 N -1.058 6.058 8 S 2.563 3.437 9 O -0.954 6.954 10 O -0.937 6.937 11 C -0.569 4.569 12 C -0.005 4.005 13 C -0.519 4.519 14 H 0.079 0.921 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.870 3.130 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C -0.003 4.003 22 C -0.208 4.208 23 C -0.213 4.213 24 C -0.046 4.046 25 O -0.174 6.174 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.430 0.570 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -18.854 17.924 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.016 4.016 3 H 0.132 0.868 4 C -0.183 4.183 5 C 0.322 3.678 6 O -0.356 6.356 7 N -0.819 5.819 8 S 2.663 3.337 9 O -0.945 6.945 10 O -0.928 6.928 11 C -0.703 4.703 12 C -0.045 4.045 13 C -0.558 4.558 14 H 0.097 0.903 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.696 3.304 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.053 4.053 22 C -0.227 4.227 23 C -0.232 4.232 24 C -0.114 4.114 25 O -0.070 6.070 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.265 0.735 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.688 -18.471 17.109 25.234 hybrid contribution 0.478 -0.116 -0.177 0.523 sum -1.210 -18.587 16.933 25.173 Atomic orbital electron populations 1.22037 0.92702 1.02602 1.04258 1.19608 0.97539 0.98290 0.86163 0.86792 1.21917 1.04167 1.00843 0.91324 1.20550 0.77150 0.85390 0.84728 1.90897 1.35600 1.23078 1.86034 1.55371 1.65591 1.38218 1.22754 1.06728 0.76436 0.77880 0.72647 1.93599 1.81902 1.68879 1.50108 1.93605 1.29148 1.85944 1.84059 1.30177 1.12966 1.16137 1.11026 1.19432 0.98356 0.96325 0.90382 1.20811 1.27707 0.97563 1.09720 0.90325 1.24974 0.95356 0.94786 0.97933 1.69875 1.41806 1.06518 1.35057 0.86922 0.81555 0.79353 0.82604 1.19599 1.20731 1.18643 1.22396 1.01250 0.82654 0.99036 1.21672 1.03743 1.01478 0.95847 1.21851 1.05466 0.93625 1.02286 1.24024 0.99351 1.00915 0.87073 1.84000 1.59497 1.28082 1.35418 0.89315 0.91997 0.92493 0.87278 0.87349 0.73493 0.84451 0.85422 0.94879 0.95106 0.92337 0.83304 0.83515 0.78222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.92 37.16 0.33 -1.25 16 2 C 0.00 0.03 2.44 -91.77 -0.22 -0.20 16 3 H 0.11 1.05 7.91 -51.93 -0.41 0.64 16 4 C -0.14 -1.12 5.16 -27.88 -0.14 -1.27 16 5 C 0.54 6.23 7.29 -10.98 -0.08 6.15 16 6 O -0.48 -7.42 12.07 -11.59 -0.14 -7.56 16 7 N -1.06 -11.87 5.60 31.22 0.17 -11.70 16 8 S 2.56 42.73 5.11 -107.50 -0.55 42.18 16 9 O -0.95 -17.47 18.08 -57.54 -1.04 -18.51 16 10 O -0.94 -18.88 17.04 -64.79 -1.10 -19.99 16 11 C -0.57 -10.54 5.82 37.16 0.22 -10.32 16 12 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 13 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 14 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 17 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 21 C 0.00 -0.03 5.83 -35.62 -0.21 -0.24 16 22 C -0.21 -1.86 10.78 -39.70 -0.43 -2.29 16 23 C -0.21 -1.67 10.91 -39.70 -0.43 -2.10 16 24 C -0.05 -0.33 12.09 29.41 0.36 0.02 16 25 O -0.17 -1.60 10.65 5.71 0.06 -1.54 16 26 H 0.09 1.07 5.95 -51.93 -0.31 0.76 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.43 3.04 8.79 -34.47 -0.30 2.74 16 32 H 0.14 2.51 7.19 -51.93 -0.37 2.14 16 33 H 0.13 2.05 8.14 -51.93 -0.42 1.63 16 34 H 0.03 0.77 7.20 -51.92 -0.37 0.40 16 35 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.20 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -36.96 344.93 -7.58 -44.54 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.13 Total: 1.46 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -1.16 Total: -24.61 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.95 Total: -38.00 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -2.22 Total: -47.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 42.73 SS G_CDS: -0.55 Total: 42.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.96 -7.58 -44.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331696895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.675 kcal (2) G-P(sol) polarization free energy of solvation -36.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds