Wall clock time and date at job start Tue Mar 31 2020 11:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 O 1.21285 * 119.99764 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00090 * 180.02562 * 5 4 2 8 8 S 1.65602 * 119.99908 * 179.97438 * 7 5 4 9 9 O 1.42097 * 104.27708 * 181.07220 * 8 7 5 10 10 O 1.42103 * 104.27865 * 308.92909 * 8 7 5 11 11 C 1.81399 * 104.44803 * 64.99965 * 8 7 5 12 12 C 1.53000 * 109.47085 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47227 * 180.02562 * 12 11 8 14 14 H 1.07999 * 119.99935 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00139 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00199 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47076 * 89.99702 * 17 15 13 19 19 H 1.48495 * 109.47235 * 210.00302 * 17 15 13 20 20 H 1.48502 * 109.47036 * 330.00393 * 17 15 13 21 21 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 22 22 C 1.34513 * 125.78694 * 239.71617 * 21 2 1 23 23 C 1.41387 * 106.84052 * 179.88546 * 22 21 2 24 24 C 1.34511 * 106.83723 * 0.37364 * 23 22 21 25 25 O 1.34302 * 108.42549 * 359.77020 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 0.96995 * 120.00069 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47092 * 299.99575 * 11 8 7 33 33 H 1.08996 * 109.47254 * 60.00072 * 11 8 7 34 34 H 1.09008 * 109.46942 * 299.99681 * 12 11 8 35 35 H 1.09000 * 109.47633 * 59.99764 * 12 11 8 36 36 H 0.96995 * 119.99959 * 180.02562 * 16 15 13 37 37 H 1.07994 * 126.58203 * 0.02562 * 22 21 2 38 38 H 1.07994 * 126.57836 * 180.16152 * 23 22 21 39 39 H 1.08000 * 125.78899 * 179.75138 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9845 -0.3920 -3.7001 8 16 1.5459 0.4629 -5.0489 9 8 2.0464 -0.3095 -6.1315 10 8 0.1509 0.6807 -4.8876 11 6 2.4546 2.0267 -4.9089 12 6 2.1288 2.9152 -6.1111 13 6 2.8842 4.2140 -5.9952 14 1 3.5316 4.3885 -5.1485 15 6 2.7481 5.1801 -6.9696 16 7 3.4069 6.3137 -6.8681 17 14 1.6279 4.8786 -8.4337 18 1 0.2589 5.3586 -8.1167 19 1 2.1488 5.6125 -9.6149 20 1 1.5855 3.4247 -8.7334 21 6 2.0324 -0.7105 1.2305 22 6 2.8134 -0.1736 2.1850 23 6 3.0387 -1.1851 3.1468 24 6 2.3887 -2.2820 2.7183 25 8 1.7810 -1.9887 1.5571 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 2.4877 -1.2162 -3.7908 32 1 2.1615 2.5362 -3.9911 33 1 3.5253 1.8239 -4.8860 34 1 2.4216 2.4058 -7.0293 35 1 1.0581 3.1179 -6.1337 36 1 3.3109 6.9934 -7.5534 37 1 3.1933 0.8370 2.2127 38 1 3.6235 -1.0953 4.0503 39 1 2.3606 -3.2367 3.2223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331696895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:20 Heat of formation + Delta-G solvation = -133.874968 kcal Electronic energy + Delta-G solvation = -23938.269251 eV Core-core repulsion = 20166.633518 eV Total energy + Delta-G solvation = -3771.635734 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.46725 -41.36196 -38.31664 -37.24683 -36.30043 -35.96194 -35.59535 -33.79383 -33.51547 -29.99641 -28.93409 -27.94508 -24.53453 -23.24002 -22.72437 -22.40614 -20.91935 -20.61396 -19.52296 -18.95635 -18.63485 -17.87708 -17.40220 -16.88731 -16.72216 -16.65649 -16.36050 -15.97373 -15.37826 -15.32858 -14.87584 -14.75512 -14.21402 -13.84642 -13.72112 -13.68248 -13.53566 -13.41440 -13.36194 -13.26692 -13.11059 -13.02705 -12.61982 -12.32225 -12.27725 -12.08080 -11.98784 -11.91603 -11.70390 -11.26253 -11.15744 -10.85512 -10.79471 -9.34162 -8.37461 -6.43766 -1.02201 0.84700 1.00830 1.32531 1.33466 1.39756 1.43694 1.76558 2.13218 2.29034 2.52639 2.96309 3.00244 3.23624 3.61280 3.75279 3.90411 3.96461 4.01209 4.08451 4.19097 4.34295 4.41832 4.52045 4.62859 4.67019 4.90851 4.97274 5.01939 5.06264 5.07092 5.15246 5.23220 5.39201 5.44961 5.64890 5.68417 6.15032 6.26952 6.44972 6.61959 7.20429 8.78201 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.002984 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.207102 B = 9381.738754 C =10049.981750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.003 3.997 3 H 0.107 0.893 4 C -0.131 4.131 5 C 0.534 3.466 6 O -0.522 6.522 7 N -1.037 6.037 8 S 2.602 3.398 9 O -0.967 6.967 10 O -0.972 6.972 11 C -0.580 4.580 12 C -0.015 4.015 13 C -0.529 4.529 14 H 0.048 0.952 15 C 0.013 3.987 16 N -0.940 5.940 17 Si 0.926 3.074 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.245 1.245 21 C -0.014 4.014 22 C -0.221 4.221 23 C -0.230 4.230 24 C -0.041 4.041 25 O -0.184 6.184 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.452 0.548 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.040 0.960 35 H 0.029 0.971 36 H 0.270 0.730 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -21.677 18.512 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.016 4.016 3 H 0.125 0.875 4 C -0.173 4.173 5 C 0.323 3.677 6 O -0.396 6.396 7 N -0.805 5.805 8 S 2.700 3.300 9 O -0.958 6.958 10 O -0.962 6.962 11 C -0.712 4.712 12 C -0.055 4.055 13 C -0.568 4.568 14 H 0.066 0.934 15 C -0.185 4.185 16 N -0.579 5.579 17 Si 0.749 3.251 18 H -0.188 1.188 19 H -0.197 1.197 20 H -0.168 1.168 21 C -0.064 4.064 22 C -0.241 4.241 23 C -0.249 4.249 24 C -0.108 4.108 25 O -0.081 6.081 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.292 0.708 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.170 0.830 38 H 0.181 0.819 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.635 -21.310 17.688 27.742 hybrid contribution 0.529 0.715 -0.174 0.907 sum -1.106 -20.594 17.514 27.057 Atomic orbital electron populations 1.21985 0.93675 1.02702 1.03039 1.19533 0.96734 0.98331 0.86985 0.87485 1.22001 1.06118 1.00847 0.88286 1.21294 0.76040 0.85025 0.85381 1.90902 1.37348 1.25048 1.86302 1.54843 1.65760 1.38597 1.21251 1.05314 0.75030 0.76741 0.72956 1.93578 1.81902 1.68575 1.51695 1.93565 1.31276 1.86344 1.85002 1.30181 1.15121 1.17317 1.08608 1.19378 0.97562 0.95442 0.93071 1.21140 1.27366 0.99673 1.08599 0.93372 1.25890 0.96978 0.94538 1.01133 1.70006 1.43755 1.07694 1.36483 0.86004 0.79634 0.80328 0.79154 1.18844 1.19705 1.16848 1.22277 1.01962 0.82993 0.99206 1.21928 1.03789 1.02073 0.96260 1.22152 1.06231 0.93601 1.02897 1.24752 0.97841 1.02045 0.86140 1.83993 1.59899 1.27907 1.36269 0.91592 0.92120 0.91684 0.84236 0.84911 0.70768 0.84721 0.83249 0.94139 0.95271 0.92055 0.82984 0.81908 0.74826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.92 71.98 0.64 -2.40 16 2 C 0.00 0.05 2.44 -11.54 -0.03 0.02 16 3 H 0.11 1.93 7.91 -2.39 -0.02 1.91 16 4 C -0.13 -1.73 5.16 29.85 0.15 -1.58 16 5 C 0.53 11.48 7.29 87.66 0.64 12.12 16 6 O -0.52 -15.83 12.07 13.34 0.16 -15.66 16 7 N -1.04 -20.79 5.60 -173.53 -0.97 -21.76 16 8 S 2.60 82.91 5.11 -56.49 -0.29 82.62 16 9 O -0.97 -33.32 18.08 -127.65 -2.31 -35.63 16 10 O -0.97 -38.39 17.04 -120.72 -2.06 -40.45 16 11 C -0.58 -21.22 5.82 71.98 0.42 -20.80 16 12 C -0.02 -0.73 4.05 29.85 0.12 -0.61 16 13 C -0.53 -30.28 9.66 25.60 0.25 -30.03 16 14 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 15 C 0.01 0.77 5.47 84.66 0.46 1.24 16 16 N -0.94 -58.26 13.96 21.45 0.30 -57.96 16 17 Si 0.93 44.03 27.47 68.60 1.88 45.91 16 18 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 21 C -0.01 -0.24 5.83 24.83 0.14 -0.10 16 22 C -0.22 -3.65 10.78 22.19 0.24 -3.41 16 23 C -0.23 -3.11 10.91 22.19 0.24 -2.87 16 24 C -0.04 -0.48 12.09 66.97 0.81 0.33 16 25 O -0.18 -2.93 10.65 -2.49 -0.03 -2.96 16 26 H 0.07 1.60 5.95 -2.39 -0.01 1.59 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.45 4.82 8.79 -96.75 -0.85 3.97 16 32 H 0.13 4.99 7.19 -2.39 -0.02 4.97 16 33 H 0.15 4.66 8.14 -2.39 -0.02 4.64 16 34 H 0.04 1.84 7.20 -2.38 -0.02 1.83 16 35 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.24 0.78 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -81.37 344.93 0.95 -80.42 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.17 Total: 13.55 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 4.09 Total: -48.08 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -0.67 Total: -79.72 kcal Atomic # 8 Polarization: -90.47 SS G_CDS: -4.23 Total: -94.70 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: 82.91 SS G_CDS: -0.29 Total: 82.62 kcal Total: -81.37 0.95 -80.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331696895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.455 kcal (2) G-P(sol) polarization free energy of solvation -81.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds