Wall clock time and date at job start Tue Mar 31 2020 11:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36018 * 116.99818 * 2 1 4 4 C 1.35479 * 120.48355 * 359.72968 * 3 2 1 5 5 O 1.33843 * 121.01687 * 179.78019 * 4 3 2 6 6 C 1.34295 * 122.03928 * 0.47893 * 5 4 3 7 7 C 1.47979 * 119.58032 * 179.76117 * 6 5 4 8 8 O 1.21536 * 120.00475 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99944 * 0.02610 * 7 6 5 10 10 C 1.39798 * 120.00114 * 174.89478 * 9 7 6 11 11 C 1.39323 * 119.95178 * 325.50535 * 10 9 7 12 12 C 1.38476 * 120.42534 * 179.76218 * 11 10 9 13 13 C 1.37694 * 120.32742 * 0.52270 * 12 11 10 14 14 C 1.40741 * 119.88861 * 359.73609 * 13 12 11 15 15 C 1.41410 * 120.20571 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00140 * 205.18424 * 15 14 13 17 17 C 1.39933 * 120.00083 * 25.17953 * 15 14 13 18 18 N 1.30818 * 120.00033 * 16.79842 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 196.80017 * 17 15 14 20 20 H 1.48501 * 109.47302 * 90.00013 * 19 17 15 21 21 H 1.48499 * 109.47216 * 210.00076 * 19 17 15 22 22 H 1.48503 * 109.47341 * 330.00092 * 19 17 15 23 23 C 1.38283 * 119.95268 * 145.78891 * 10 9 7 24 24 C 1.35845 * 120.84482 * 359.78640 * 6 5 4 25 25 C 1.42021 * 120.47811 * 179.97438 * 3 2 1 26 26 O 1.22121 * 120.91919 * 0.02562 * 25 3 2 27 27 H 1.09005 * 109.47164 * 299.99271 * 1 2 3 28 28 H 1.09001 * 109.47487 * 59.99348 * 1 2 3 29 29 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.49344 * 359.97438 * 4 3 2 31 31 H 0.97000 * 119.99864 * 354.89343 * 9 7 6 32 32 H 1.08004 * 119.78917 * 0.02562 * 11 10 9 33 33 H 1.08000 * 119.83777 * 180.24111 * 12 11 10 34 34 H 1.07992 * 120.05406 * 179.76461 * 13 12 11 35 35 H 0.97003 * 120.00276 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.16022 * 359.95434 * 23 10 9 37 37 H 1.07994 * 120.55159 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3182 2.3543 -0.0055 5 8 1.9146 3.5525 -0.0012 6 6 3.2512 3.6830 -0.0008 7 6 3.8532 5.0348 -0.0012 8 8 5.0619 5.1618 -0.0013 9 7 3.0611 6.1252 -0.0015 10 6 3.6259 7.3995 0.1058 11 6 4.7650 7.5922 0.8845 12 6 5.3354 8.8493 0.9937 13 6 4.7762 9.9255 0.3419 14 6 3.6224 9.7473 -0.4440 15 6 3.0428 10.8479 -1.1168 16 1 1.9926 10.8349 -1.3684 17 6 3.8300 11.9538 -1.4564 18 7 5.1342 11.8522 -1.4593 19 14 3.0184 13.5752 -1.9056 20 1 2.8367 14.3941 -0.6801 21 1 3.8784 14.3092 -2.8683 22 1 1.6950 13.3115 -2.5254 23 6 3.0497 8.4681 -0.5564 24 6 4.0577 2.5899 -0.0004 25 6 3.4640 1.2982 0.0005 26 8 4.1540 0.2905 0.0006 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2397 2.2973 -0.0103 31 1 2.0991 6.0258 -0.0762 32 1 5.2085 6.7549 1.4029 33 1 6.2207 8.9871 1.5968 34 1 5.2225 10.9047 0.4332 35 1 5.6799 12.6190 -1.6944 36 1 2.1644 8.3207 -1.1572 37 1 5.1320 2.7003 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361557710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:40 Heat of formation + Delta-G solvation = -67.271518 kcal Electronic energy + Delta-G solvation = -24554.419741 eV Core-core repulsion = 20650.228199 eV Total energy + Delta-G solvation = -3904.191543 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39604 -40.07345 -39.37757 -38.37722 -37.40125 -34.78898 -33.27346 -32.80371 -31.69090 -29.95981 -28.61116 -28.18136 -25.46949 -25.20014 -24.21434 -22.09035 -21.13170 -20.33925 -19.28497 -18.94751 -18.22811 -17.56372 -17.11764 -16.31955 -15.88742 -15.72293 -15.45222 -15.21311 -15.07518 -14.95454 -14.70098 -14.39372 -14.22544 -14.08987 -13.21672 -13.02953 -12.93268 -12.36836 -11.97585 -11.90655 -11.79188 -11.35180 -11.26341 -11.04578 -10.75050 -10.43024 -10.17433 -9.99496 -9.86274 -9.71152 -9.37031 -9.13482 -8.60507 -7.59479 -7.12013 -6.82277 -4.46451 0.16556 0.64286 1.79063 2.38557 2.63477 2.72234 2.93040 3.02752 3.05585 3.09565 3.14685 3.33960 3.87158 3.87826 4.06747 4.39555 4.55452 4.56510 4.64320 4.83458 4.97306 5.03646 5.20249 5.55927 5.71621 6.14564 6.30963 6.44760 6.55643 6.61474 6.80180 6.84296 6.92638 7.13938 7.36610 7.39194 7.45690 7.74446 7.90717 7.96315 8.10142 8.23802 8.53096 8.78815 8.83951 10.11812 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.002548 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.061120 B =10987.877938 C =11702.853446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.283 6.283 3 C -0.053 4.053 4 C -0.004 4.004 5 O -0.195 6.195 6 C 0.099 3.901 7 C 0.564 3.436 8 O -0.480 6.480 9 N -0.640 5.640 10 C 0.143 3.857 11 C -0.226 4.226 12 C -0.094 4.094 13 C -0.162 4.162 14 C 0.121 3.879 15 C -0.463 4.463 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.792 5.792 19 Si 0.910 3.090 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.237 4.237 24 C -0.232 4.232 25 C 0.409 3.591 26 O -0.459 6.459 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.203 0.797 31 H 0.409 0.591 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.282 0.718 36 H 0.098 0.902 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 -13.558 2.519 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.196 6.196 3 C -0.100 4.100 4 C -0.069 4.069 5 O -0.098 6.098 6 C 0.048 3.952 7 C 0.347 3.653 8 O -0.354 6.354 9 N -0.284 5.284 10 C 0.052 3.948 11 C -0.247 4.247 12 C -0.113 4.113 13 C -0.182 4.182 14 C 0.118 3.882 15 C -0.492 4.492 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.259 4.259 24 C -0.253 4.253 25 C 0.296 3.704 26 O -0.343 6.343 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.220 0.780 31 H 0.244 0.756 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.568 -13.849 2.465 17.012 hybrid contribution -1.115 0.593 -0.371 1.316 sum -10.682 -13.256 2.094 17.153 Atomic orbital electron populations 1.23237 0.78459 1.05069 1.01393 1.86290 1.20912 1.23698 1.88746 1.21039 0.95387 0.86007 1.07615 1.23921 0.98213 0.81148 1.03666 1.82933 1.20330 1.30816 1.75730 1.22680 0.79969 0.96460 0.96114 1.17378 0.86735 0.81819 0.79351 1.90931 1.12521 1.83995 1.47985 1.43342 1.10319 1.04999 1.69698 1.17405 0.96695 0.81485 0.99218 1.20298 1.00055 0.97363 1.06955 1.20589 0.98344 0.92837 0.99505 1.21434 0.99266 0.98216 0.99266 1.17380 0.90928 0.90705 0.89159 1.19534 0.96895 0.99647 1.33163 0.90325 1.25907 0.94573 1.00521 0.93246 1.69815 1.05366 1.31691 1.34779 0.86283 0.80152 0.81076 0.79034 1.19233 1.20300 1.18641 1.20707 1.05469 0.92288 1.07388 1.23162 1.03851 0.90783 1.07546 1.17085 0.86203 0.89830 0.77310 1.90842 1.65124 1.37944 1.40354 0.92273 0.92275 0.87423 0.78044 0.75581 0.88052 0.88745 0.86127 0.90723 0.88401 0.80277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 101.05 0.99 1.06 16 2 O -0.28 -3.00 10.35 -35.04 -0.36 -3.36 16 3 C -0.05 -0.59 6.72 -39.12 -0.26 -0.85 16 4 C 0.00 -0.03 10.43 29.75 0.31 0.28 16 5 O -0.20 -1.94 9.07 6.95 0.06 -1.88 16 6 C 0.10 1.26 6.90 -36.45 -0.25 1.01 16 7 C 0.56 9.13 7.53 -12.27 -0.09 9.03 16 8 O -0.48 -9.45 14.00 5.33 0.07 -9.38 16 9 N -0.64 -10.47 5.32 -10.73 -0.06 -10.53 16 10 C 0.14 3.00 6.24 -83.80 -0.52 2.48 16 11 C -0.23 -5.04 8.66 -39.09 -0.34 -5.37 16 12 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 13 C -0.16 -4.06 8.69 -38.84 -0.34 -4.40 16 14 C 0.12 3.07 5.57 -106.85 -0.59 2.47 16 15 C -0.46 -11.63 9.05 -37.74 -0.34 -11.97 16 16 H 0.08 1.88 7.90 -52.48 -0.41 1.46 16 17 C 0.08 1.82 5.16 -17.35 -0.09 1.73 16 18 N -0.79 -19.83 10.94 55.55 0.61 -19.22 16 19 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.24 -5.36 9.70 -38.67 -0.38 -5.74 16 24 C -0.23 -3.09 9.56 -38.93 -0.37 -3.46 16 25 C 0.41 5.74 6.82 -36.63 -0.25 5.49 16 26 O -0.46 -7.98 17.74 -10.43 -0.19 -8.16 16 27 H 0.06 0.19 7.68 -51.93 -0.40 -0.21 16 28 H 0.06 0.19 7.65 -51.93 -0.40 -0.20 16 29 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.20 0.75 6.21 -52.49 -0.33 0.42 16 31 H 0.41 5.23 8.23 -40.82 -0.34 4.89 16 32 H 0.10 2.20 6.48 -52.48 -0.34 1.86 16 33 H 0.09 1.96 8.06 -52.49 -0.42 1.53 16 34 H 0.12 3.11 6.17 -52.49 -0.32 2.78 16 35 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 36 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.18 2.44 7.56 -52.49 -0.40 2.04 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -31.55 329.61 -6.18 -37.73 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -3.34 Total: 7.76 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.92 Total: -10.78 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.55 Total: -29.75 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.41 Total: -22.78 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.55 -6.18 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361557710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.542 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds