Wall clock time and date at job start Tue Mar 31 2020 11:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36018 * 116.99818 * 2 1 4 4 C 1.35479 * 120.48355 * 359.72968 * 3 2 1 5 5 O 1.33843 * 121.01687 * 179.78019 * 4 3 2 6 6 C 1.34295 * 122.03928 * 0.47893 * 5 4 3 7 7 C 1.47979 * 119.58032 * 179.76117 * 6 5 4 8 8 O 1.21536 * 120.00475 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99944 * 0.02610 * 7 6 5 10 10 C 1.39798 * 120.00114 * 174.89478 * 9 7 6 11 11 C 1.39323 * 119.95178 * 325.50535 * 10 9 7 12 12 C 1.38476 * 120.42534 * 179.76218 * 11 10 9 13 13 C 1.37694 * 120.32742 * 0.52270 * 12 11 10 14 14 C 1.40741 * 119.88861 * 359.73609 * 13 12 11 15 15 C 1.41410 * 120.20571 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00140 * 205.18424 * 15 14 13 17 17 C 1.39933 * 120.00083 * 25.17953 * 15 14 13 18 18 N 1.30818 * 120.00033 * 16.79842 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 196.80017 * 17 15 14 20 20 H 1.48501 * 109.47302 * 90.00013 * 19 17 15 21 21 H 1.48499 * 109.47216 * 210.00076 * 19 17 15 22 22 H 1.48503 * 109.47341 * 330.00092 * 19 17 15 23 23 C 1.38283 * 119.95268 * 145.78891 * 10 9 7 24 24 C 1.35845 * 120.84482 * 359.78640 * 6 5 4 25 25 C 1.42021 * 120.47811 * 179.97438 * 3 2 1 26 26 O 1.22121 * 120.91919 * 0.02562 * 25 3 2 27 27 H 1.09005 * 109.47164 * 299.99271 * 1 2 3 28 28 H 1.09001 * 109.47487 * 59.99348 * 1 2 3 29 29 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.49344 * 359.97438 * 4 3 2 31 31 H 0.97000 * 119.99864 * 354.89343 * 9 7 6 32 32 H 1.08004 * 119.78917 * 0.02562 * 11 10 9 33 33 H 1.08000 * 119.83777 * 180.24111 * 12 11 10 34 34 H 1.07992 * 120.05406 * 179.76461 * 13 12 11 35 35 H 0.97003 * 120.00276 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.16022 * 359.95434 * 23 10 9 37 37 H 1.07994 * 120.55159 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3182 2.3543 -0.0055 5 8 1.9146 3.5525 -0.0012 6 6 3.2512 3.6830 -0.0008 7 6 3.8532 5.0348 -0.0012 8 8 5.0619 5.1618 -0.0013 9 7 3.0611 6.1252 -0.0015 10 6 3.6259 7.3995 0.1058 11 6 4.7650 7.5922 0.8845 12 6 5.3354 8.8493 0.9937 13 6 4.7762 9.9255 0.3419 14 6 3.6224 9.7473 -0.4440 15 6 3.0428 10.8479 -1.1168 16 1 1.9926 10.8349 -1.3684 17 6 3.8300 11.9538 -1.4564 18 7 5.1342 11.8522 -1.4593 19 14 3.0184 13.5752 -1.9056 20 1 2.8367 14.3941 -0.6801 21 1 3.8784 14.3092 -2.8683 22 1 1.6950 13.3115 -2.5254 23 6 3.0497 8.4681 -0.5564 24 6 4.0577 2.5899 -0.0004 25 6 3.4640 1.2982 0.0005 26 8 4.1540 0.2905 0.0006 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2397 2.2973 -0.0103 31 1 2.0991 6.0258 -0.0762 32 1 5.2085 6.7549 1.4029 33 1 6.2207 8.9871 1.5968 34 1 5.2225 10.9047 0.4332 35 1 5.6799 12.6190 -1.6944 36 1 2.1644 8.3207 -1.1572 37 1 5.1320 2.7003 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361557710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:39 Heat of formation + Delta-G solvation = -87.483343 kcal Electronic energy + Delta-G solvation = -24555.296192 eV Core-core repulsion = 20650.228199 eV Total energy + Delta-G solvation = -3905.067993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.36095 -41.40804 -40.31316 -39.32377 -39.06651 -36.39044 -34.98520 -33.90539 -32.62006 -31.78459 -30.17833 -28.69065 -27.22141 -26.45949 -25.05322 -23.52405 -22.86440 -21.86115 -20.20991 -19.94380 -19.59037 -18.97061 -18.02667 -17.45061 -17.31021 -16.86037 -16.78976 -16.46989 -16.34344 -16.00235 -15.86213 -15.61137 -15.26618 -15.25683 -14.94109 -14.63308 -14.10296 -13.79425 -13.55243 -13.02834 -12.94571 -12.73393 -12.46991 -12.45741 -12.37960 -11.98787 -11.56651 -11.48246 -11.18497 -11.08339 -10.96906 -10.84198 -9.44299 -9.42991 -8.85693 -8.60852 -6.35159 -0.94033 -0.20450 0.74666 0.88411 0.97062 1.42609 1.49280 1.55637 1.63024 1.76907 2.00817 2.18155 2.23502 2.75598 3.16239 3.18652 3.27460 3.71153 3.78743 4.17668 4.21926 4.32152 4.41029 4.41939 4.62024 4.74315 4.78524 4.87734 5.02445 5.07532 5.13019 5.32265 5.60497 5.65686 5.79919 5.95303 6.06054 6.09303 6.20008 6.41604 6.44192 6.65896 6.82110 6.93097 7.02944 8.35156 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.002548 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.061120 B =10987.877938 C =11702.853446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.313 6.313 3 C -0.073 4.073 4 C 0.037 3.963 5 O -0.180 6.180 6 C 0.116 3.884 7 C 0.570 3.430 8 O -0.518 6.518 9 N -0.630 5.630 10 C 0.155 3.845 11 C -0.236 4.236 12 C -0.097 4.097 13 C -0.191 4.191 14 C 0.093 3.907 15 C -0.492 4.492 16 H 0.084 0.916 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.255 1.255 23 C -0.242 4.242 24 C -0.233 4.233 25 C 0.399 3.601 26 O -0.513 6.513 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.259 0.741 31 H 0.428 0.572 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.288 0.712 36 H 0.117 0.883 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.214 -13.758 2.263 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.227 6.227 3 C -0.120 4.120 4 C -0.029 4.029 5 O -0.081 6.081 6 C 0.063 3.937 7 C 0.355 3.645 8 O -0.394 6.394 9 N -0.275 5.275 10 C 0.063 3.937 11 C -0.257 4.257 12 C -0.116 4.116 13 C -0.210 4.210 14 C 0.090 3.910 15 C -0.522 4.522 16 H 0.102 0.898 17 C -0.181 4.181 18 N -0.452 5.452 19 Si 0.805 3.195 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.264 4.264 24 C -0.255 4.255 25 C 0.290 3.710 26 O -0.401 6.401 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.137 0.863 30 H 0.275 0.725 31 H 0.268 0.732 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.899 -14.061 2.214 19.209 hybrid contribution -0.189 0.524 -0.265 0.617 sum -13.089 -13.537 1.949 18.930 Atomic orbital electron populations 1.23648 0.75492 1.06775 1.03473 1.86262 1.23960 1.23479 1.89030 1.20711 0.94076 0.87516 1.09722 1.24800 0.99715 0.79095 0.99277 1.82966 1.18512 1.32067 1.74545 1.21795 0.81163 0.94042 0.96663 1.17620 0.86258 0.82677 0.77950 1.90922 1.14351 1.84906 1.49215 1.43154 1.11399 1.03426 1.69553 1.17352 0.95824 0.83030 0.97522 1.20473 1.00684 0.97103 1.07408 1.20803 0.98764 0.92815 0.99202 1.21373 1.00395 0.98115 1.01152 1.17757 0.91488 0.92123 0.89607 1.19833 0.97378 1.00767 1.34190 0.89789 1.26787 0.94928 1.03725 0.92700 1.69886 1.06806 1.32948 1.35561 0.85173 0.79237 0.76318 0.78812 1.18758 1.19791 1.17816 1.20886 1.06046 0.91830 1.07608 1.23084 1.03663 0.91105 1.07628 1.17450 0.87977 0.89163 0.76384 1.90816 1.66445 1.39120 1.43701 0.90009 0.90044 0.86313 0.72534 0.73214 0.87511 0.87173 0.87803 0.90157 0.86486 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.11 16 2 O -0.31 -5.95 10.35 -79.18 -0.82 -6.77 16 3 C -0.07 -1.44 6.72 22.57 0.15 -1.29 16 4 C 0.04 0.42 10.43 67.18 0.70 1.12 16 5 O -0.18 -2.81 9.07 1.95 0.02 -2.80 16 6 C 0.12 2.70 6.90 24.30 0.17 2.87 16 7 C 0.57 17.58 7.53 86.83 0.65 18.23 16 8 O -0.52 -20.25 14.00 -3.83 -0.05 -20.31 16 9 N -0.63 -19.21 5.32 -306.15 -1.63 -20.84 16 10 C 0.16 6.36 6.24 38.14 0.24 6.60 16 11 C -0.24 -10.46 8.66 22.59 0.20 -10.27 16 12 C -0.10 -4.54 10.02 22.20 0.22 -4.31 16 13 C -0.19 -9.81 8.69 22.75 0.20 -9.61 16 14 C 0.09 4.77 5.57 -21.31 -0.12 4.65 16 15 C -0.49 -24.94 9.05 23.46 0.21 -24.73 16 16 H 0.08 4.00 7.90 -2.91 -0.02 3.98 16 17 C 0.03 1.63 5.16 85.25 0.44 2.07 16 18 N -0.83 -42.29 10.94 21.82 0.24 -42.05 16 19 Si 0.98 36.41 29.59 68.60 2.03 38.44 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 21 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 22 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 23 C -0.24 -10.79 9.70 22.86 0.22 -10.57 16 24 C -0.23 -6.13 9.56 22.69 0.22 -5.91 16 25 C 0.40 11.16 6.82 24.18 0.16 11.32 16 26 O -0.51 -18.57 17.74 8.86 0.16 -18.41 16 27 H 0.08 0.11 7.68 -2.38 -0.02 0.09 16 28 H 0.08 0.12 7.65 -2.39 -0.02 0.10 16 29 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.26 0.06 6.21 -2.91 -0.02 0.04 16 31 H 0.43 9.50 8.23 -92.71 -0.76 8.73 16 32 H 0.11 4.60 6.48 -2.91 -0.02 4.58 16 33 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.10 5.60 6.17 -2.91 -0.02 5.58 16 35 H 0.29 13.36 8.30 -92.71 -0.77 12.60 16 36 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.17 4.75 7.56 -2.91 -0.02 4.73 16 Total: -1.00 -72.64 329.61 5.10 -67.54 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.39 Total: 23.91 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 4.78 Total: -18.72 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -1.39 Total: -62.89 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -0.70 Total: -48.28 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -72.64 5.10 -67.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361557710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.947 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds