Wall clock time and date at job start Tue Mar 31 2020 10:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47115 * 89.99974 * 8 6 4 10 10 H 1.48509 * 109.46780 * 210.00159 * 8 6 4 11 11 H 1.48497 * 109.46888 * 329.99916 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21693 * 120.00200 * 359.72115 * 14 13 12 16 16 C 1.46658 * 119.99639 * 179.72443 * 14 13 12 17 17 C 1.36545 * 125.98797 * 179.97438 * 16 14 13 18 18 C 1.40362 * 106.71195 * 179.97438 * 17 16 14 19 19 C 1.35135 * 107.10939 * 0.02562 * 18 17 16 20 20 S 1.76209 * 125.61111 * 180.02562 * 19 18 17 21 21 C 1.81391 * 104.45099 * 89.99664 * 20 19 18 22 22 O 1.42104 * 104.27112 * 206.06776 * 20 19 18 23 23 O 1.42091 * 104.27587 * 333.92221 * 20 19 18 24 24 O 1.33922 * 108.77042 * 359.75289 * 19 18 17 25 25 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 26 26 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 27 27 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 30 30 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 31 31 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 32 32 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 35 35 H 1.08008 * 126.64443 * 359.96141 * 17 16 14 36 36 H 1.07993 * 126.44548 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47107 * 59.99719 * 21 20 19 38 38 H 1.09002 * 109.47098 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47349 * 299.99725 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4874 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5814 -1.4771 3.7813 16 6 1.3979 0.2073 4.8669 17 6 1.6558 -0.1478 6.1599 18 6 0.9999 0.7888 6.9741 19 6 0.3778 1.6631 6.1527 20 16 -0.5913 3.0421 6.6665 21 6 0.5951 4.4087 6.7891 22 8 -1.4917 3.2585 5.5886 23 8 -1.0656 2.6764 7.9550 24 8 0.6242 1.3123 4.8839 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.7090 1.1613 -3.4845 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 0.9942 0.7584 2.3564 35 1 2.2493 -0.9869 6.4919 36 1 0.9936 0.8072 8.0539 37 1 1.0580 4.5763 5.8165 38 1 0.0758 5.3136 7.1047 39 1 1.3646 4.1575 7.5192 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411432168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:16 Heat of formation + Delta-G solvation = -87.297793 kcal Electronic energy + Delta-G solvation = -24204.905736 eV Core-core repulsion = 20435.289741 eV Total energy + Delta-G solvation = -3769.615996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.98599 -39.33998 -37.56241 -36.52619 -36.40626 -33.79798 -33.24103 -31.22331 -30.38783 -29.88277 -26.04407 -25.76945 -25.23616 -23.43006 -22.31556 -20.51376 -19.71839 -19.00710 -18.59991 -17.62938 -17.12629 -16.19752 -16.15752 -15.92835 -15.34708 -14.87042 -14.74513 -14.33742 -14.04033 -13.71196 -13.65299 -13.36398 -13.25812 -12.97557 -12.92420 -12.55824 -12.44608 -12.27008 -11.91079 -11.46552 -11.45365 -11.24992 -10.91508 -10.73815 -10.49330 -10.44440 -10.32870 -10.12145 -9.70043 -9.40953 -9.40318 -8.84895 -8.65538 -8.40334 -6.05546 -4.16430 -0.52348 0.47802 1.75059 2.08262 2.60830 3.16619 3.26418 3.33444 3.35149 3.39521 3.42630 3.83524 4.31097 4.36618 4.44080 4.53084 4.72209 5.04653 5.18916 5.21235 5.26638 5.36263 5.85636 6.05608 6.19242 6.30411 6.43427 6.56600 6.78789 6.80702 6.88221 6.95618 7.28863 7.50829 7.64286 7.74566 7.96165 8.07044 8.23206 8.35607 8.83724 9.49731 10.95878 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.003073 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.717323 B = 9109.520015 C = 9929.316534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.695 5.695 14 C 0.583 3.417 15 O -0.521 6.521 16 C -0.005 4.005 17 C -0.157 4.157 18 C -0.097 4.097 19 C -0.554 4.554 20 S 2.531 3.469 21 C -0.644 4.644 22 O -0.914 6.914 23 O -0.918 6.918 24 O -0.106 6.106 25 H 0.008 0.992 26 H 0.088 0.912 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.007 0.993 31 H 0.261 0.739 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 7.678 19.557 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.006 3.994 13 N -0.345 5.345 14 C 0.366 3.634 15 O -0.399 6.399 16 C -0.062 4.062 17 C -0.178 4.178 18 C -0.117 4.117 19 C -0.685 4.685 20 S 2.703 3.297 21 C -0.795 4.795 22 O -0.912 6.912 23 O -0.916 6.916 24 O 0.001 5.999 25 H 0.027 0.973 26 H 0.106 0.894 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.189 0.811 36 H 0.191 0.809 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.773 7.189 19.282 20.593 hybrid contribution 1.018 -0.371 -0.798 1.346 sum 0.245 6.818 18.483 19.702 Atomic orbital electron populations 1.21861 0.97536 0.99357 1.00388 1.18388 0.92997 0.92840 0.90298 1.21856 0.98612 0.98270 1.00318 1.20943 1.31772 1.12211 0.89760 0.92337 1.24880 0.94805 0.94883 0.98881 1.69800 1.36478 1.22607 1.23343 0.86552 0.79303 0.79378 0.82517 1.20681 1.21242 1.19903 1.21948 0.98571 0.96104 0.82798 1.46387 1.50898 1.31560 1.05626 1.16634 0.81377 0.83899 0.81524 1.90883 1.38335 1.25119 1.85608 1.23259 0.96283 0.89223 0.97412 1.22140 1.02982 1.02038 0.90595 1.21930 0.94875 0.93400 1.01522 1.35664 1.22602 1.22939 0.87298 1.05027 0.75069 0.74966 0.74624 1.30192 1.18180 1.18257 1.12868 1.93644 1.58379 1.84584 1.54562 1.93642 1.76203 1.82231 1.39474 1.84233 1.52822 1.36797 1.26012 0.97344 0.89379 0.95295 0.95324 0.89374 0.97447 0.92906 0.91924 0.91918 0.75701 0.81121 0.80882 0.84264 0.84271 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.51 -13.06 8.01 -34.44 -0.28 -13.34 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.31 9.35 55.43 0.52 -22.79 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.13 2.63 4.50 -4.04 -0.02 2.61 16 13 N -0.70 -12.51 4.95 -61.62 -0.31 -12.81 16 14 C 0.58 10.18 7.79 -12.86 -0.10 10.08 16 15 O -0.52 -10.36 16.86 5.20 0.09 -10.27 16 16 C 0.00 -0.07 7.13 -36.80 -0.26 -0.33 16 17 C -0.16 -1.90 10.62 -39.39 -0.42 -2.32 16 18 C -0.10 -0.96 10.51 -39.89 -0.42 -1.38 16 19 C -0.55 -5.94 6.97 29.63 0.21 -5.74 16 20 S 2.53 20.26 5.95 -107.50 -0.64 19.62 16 21 C -0.64 -2.24 10.79 101.05 1.09 -1.15 16 22 O -0.91 -11.29 17.95 -58.41 -1.05 -12.33 16 23 O -0.92 -9.24 17.70 -57.54 -1.02 -10.26 16 24 O -0.11 -1.45 10.40 5.02 0.05 -1.39 16 25 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 26 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.41 6.90 5.92 -40.82 -0.24 6.66 16 35 H 0.17 1.81 8.06 -52.48 -0.42 1.38 16 36 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.14 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.14 0.22 8.14 -51.92 -0.42 -0.20 16 39 H 0.13 0.22 8.14 -51.92 -0.42 -0.21 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -33.57 343.10 -6.90 -40.47 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.93 Total: 3.26 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 0.23 Total: -14.09 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.21 Total: -35.60 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.93 Total: -34.26 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 20.26 SS G_CDS: -0.64 Total: 19.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.57 -6.90 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411432168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.828 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds