Wall clock time and date at job start Tue Mar 31 2020 10:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47115 * 89.99974 * 8 6 4 10 10 H 1.48509 * 109.46780 * 210.00159 * 8 6 4 11 11 H 1.48497 * 109.46888 * 329.99916 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21693 * 120.00200 * 359.72115 * 14 13 12 16 16 C 1.46658 * 119.99639 * 179.72443 * 14 13 12 17 17 C 1.36545 * 125.98797 * 179.97438 * 16 14 13 18 18 C 1.40362 * 106.71195 * 179.97438 * 17 16 14 19 19 C 1.35135 * 107.10939 * 0.02562 * 18 17 16 20 20 S 1.76209 * 125.61111 * 180.02562 * 19 18 17 21 21 C 1.81391 * 104.45099 * 89.99664 * 20 19 18 22 22 O 1.42104 * 104.27112 * 206.06776 * 20 19 18 23 23 O 1.42091 * 104.27587 * 333.92221 * 20 19 18 24 24 O 1.33922 * 108.77042 * 359.75289 * 19 18 17 25 25 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 26 26 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 27 27 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 30 30 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 31 31 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 32 32 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 35 35 H 1.08008 * 126.64443 * 359.96141 * 17 16 14 36 36 H 1.07993 * 126.44548 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.47107 * 59.99719 * 21 20 19 38 38 H 1.09002 * 109.47098 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47349 * 299.99725 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4874 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5814 -1.4771 3.7813 16 6 1.3979 0.2073 4.8669 17 6 1.6558 -0.1478 6.1599 18 6 0.9999 0.7888 6.9741 19 6 0.3778 1.6631 6.1527 20 16 -0.5913 3.0421 6.6665 21 6 0.5951 4.4087 6.7891 22 8 -1.4917 3.2585 5.5886 23 8 -1.0656 2.6764 7.9550 24 8 0.6242 1.3123 4.8839 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.7090 1.1613 -3.4845 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 0.9942 0.7584 2.3564 35 1 2.2493 -0.9869 6.4919 36 1 0.9936 0.8072 8.0539 37 1 1.0580 4.5763 5.8165 38 1 0.0758 5.3136 7.1047 39 1 1.3646 4.1575 7.5192 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411432168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:15 Heat of formation + Delta-G solvation = -112.761144 kcal Electronic energy + Delta-G solvation = -24206.009910 eV Core-core repulsion = 20435.289741 eV Total energy + Delta-G solvation = -3770.720169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.94156 -40.78289 -38.30256 -38.23590 -37.15010 -35.26829 -34.37151 -32.93560 -31.44995 -30.29950 -27.65669 -27.60881 -27.07568 -24.64720 -23.24429 -21.76109 -20.74556 -20.46599 -19.67544 -18.66338 -18.00366 -17.79278 -16.99071 -16.97717 -16.74277 -16.64758 -16.15699 -15.57721 -14.98200 -14.82125 -14.59798 -14.43235 -14.24605 -14.05417 -13.98321 -13.94230 -13.30107 -13.24986 -13.19597 -13.13661 -12.74561 -12.72472 -12.60678 -12.29934 -12.15380 -12.02669 -11.66001 -11.53352 -11.36703 -11.21817 -10.74202 -10.48757 -10.38950 -10.07745 -8.02955 -6.19473 -1.10795 -0.52275 0.83465 1.25578 1.43448 1.46359 1.54290 1.72788 1.89305 2.16079 2.47154 2.83664 3.20570 3.20963 3.56746 3.66100 4.10136 4.13839 4.23586 4.29220 4.34150 4.44242 4.58603 4.65916 4.89618 4.98090 4.98988 5.01037 5.04959 5.14543 5.16644 5.37996 5.47463 5.62848 5.66211 6.09661 6.16637 6.33066 6.39959 6.81631 6.88677 7.48609 8.96261 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.003073 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.717323 B = 9109.520015 C = 9929.316534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.050 0.950 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.143 3.857 13 N -0.696 5.696 14 C 0.588 3.412 15 O -0.552 6.552 16 C -0.046 4.046 17 C -0.141 4.141 18 C -0.094 4.094 19 C -0.548 4.548 20 S 2.534 3.466 21 C -0.613 4.613 22 O -0.965 6.965 23 O -0.941 6.941 24 O -0.122 6.122 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.021 0.979 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.411 0.589 35 H 0.184 0.816 36 H 0.211 0.789 37 H 0.150 0.850 38 H 0.168 0.832 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 9.100 21.745 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.020 3.980 13 N -0.346 5.346 14 C 0.373 3.627 15 O -0.433 6.433 16 C -0.101 4.101 17 C -0.162 4.162 18 C -0.113 4.113 19 C -0.676 4.676 20 S 2.708 3.292 21 C -0.768 4.768 22 O -0.963 6.963 23 O -0.939 6.939 24 O -0.016 6.016 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.249 0.751 35 H 0.201 0.799 36 H 0.228 0.772 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.222 8.563 21.469 23.115 hybrid contribution 0.824 -0.695 -1.327 1.710 sum 0.602 7.869 20.142 21.633 Atomic orbital electron populations 1.21712 0.97423 0.98791 1.00257 1.18387 0.93053 0.93223 0.90405 1.21693 0.98254 0.97757 1.00338 1.21240 1.31905 1.12304 0.91243 0.93198 1.25478 0.95095 0.95546 1.01085 1.69915 1.36942 1.23282 1.23672 0.85719 0.78698 0.78395 0.79742 1.20626 1.20926 1.19815 1.21525 0.97909 0.95410 0.83139 1.46202 1.51341 1.31709 1.05309 1.16853 0.80447 0.83437 0.81930 1.90851 1.39678 1.26500 1.86261 1.22724 0.99492 0.91063 0.96869 1.22477 1.01766 1.02090 0.89894 1.22363 0.93806 0.92038 1.03130 1.36371 1.21265 1.23599 0.86377 1.05083 0.75610 0.75446 0.73040 1.30008 1.16802 1.15223 1.14739 1.93586 1.61408 1.85149 1.56147 1.93604 1.77647 1.82993 1.39646 1.84199 1.53119 1.36632 1.27620 0.95152 0.91686 0.96023 0.95683 0.91746 0.94901 0.93001 0.92724 0.93122 0.75115 0.79866 0.77169 0.83127 0.81414 0.81623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 4 C -0.53 -27.59 8.01 25.60 0.21 -27.39 16 5 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 6 C 0.03 1.46 5.15 84.65 0.44 1.89 16 7 N -0.90 -47.98 9.35 21.45 0.20 -47.78 16 8 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.14 6.00 4.50 86.38 0.39 6.39 16 13 N -0.70 -25.16 4.95 -467.09 -2.31 -27.48 16 14 C 0.59 20.66 7.79 86.44 0.67 21.34 16 15 O -0.55 -22.25 16.86 -4.33 -0.07 -22.32 16 16 C -0.05 -1.32 7.13 24.07 0.17 -1.14 16 17 C -0.14 -3.17 10.62 22.39 0.24 -2.94 16 18 C -0.09 -1.58 10.51 22.07 0.23 -1.35 16 19 C -0.55 -10.64 6.97 67.10 0.47 -10.17 16 20 S 2.53 35.12 5.95 -56.49 -0.34 34.79 16 21 C -0.61 -1.36 10.79 113.37 1.22 -0.14 16 22 O -0.97 -23.25 17.95 -126.82 -2.28 -25.53 16 23 O -0.94 -16.92 17.70 -127.65 -2.26 -19.18 16 24 O -0.12 -3.22 10.40 -4.96 -0.05 -3.27 16 25 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 26 H 0.06 3.29 6.07 -2.38 -0.01 3.28 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 3.19 6.07 -2.38 -0.01 3.18 16 30 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 31 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.41 13.87 5.92 -92.71 -0.55 13.33 16 35 H 0.18 3.54 8.06 -2.91 -0.02 3.51 16 36 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.15 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.17 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.17 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: -1.00 -74.46 343.10 0.62 -73.83 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.53 Total: 13.85 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 5.17 Total: -21.19 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -2.11 Total: -75.26 kcal Atomic # 8 Polarization: -65.64 SS G_CDS: -4.66 Total: -70.30 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 35.12 SS G_CDS: -0.34 Total: 34.79 kcal Total: -74.46 0.62 -73.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411432168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.927 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds