Wall clock time and date at job start Tue Mar 31 2020 11:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46900 * 109.47418 * 184.99759 * 4 2 1 6 6 C 1.46896 * 110.99980 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.46891 * 180.02562 * 6 5 4 8 8 N 1.29034 * 124.91487 * 89.69920 * 7 6 5 9 9 C 1.31780 * 117.12251 * 179.81200 * 8 7 6 10 10 C 1.33634 * 114.50104 * 0.47677 * 9 8 7 11 11 S 1.70977 * 124.92135 * 270.00560 * 7 6 5 12 12 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 13 13 C 1.34777 * 120.00258 * 275.00436 * 12 2 1 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 2 16 16 S 1.81003 * 109.46853 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00513 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99570 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46946 * 90.00549 * 21 19 17 23 23 H 1.48504 * 109.46826 * 210.00017 * 21 19 17 24 24 H 1.48496 * 109.47486 * 329.99998 * 21 19 17 25 25 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 26 26 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 27 27 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 29 29 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 30 30 H 1.00893 * 111.00070 * 303.95821 * 5 4 2 31 31 H 1.08992 * 109.47616 * 300.00142 * 6 5 4 32 32 H 1.08998 * 109.47078 * 60.00837 * 6 5 4 33 33 H 1.08001 * 122.74223 * 180.22948 * 9 8 7 34 34 H 1.08006 * 126.03804 * 179.72054 * 10 9 8 35 35 H 0.96999 * 119.99694 * 94.99826 * 12 2 1 36 36 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 37 37 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 38 38 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8266 -1.1904 6 6 4.0302 -1.5159 -2.3761 7 6 5.5315 -1.6054 -2.2801 8 7 6.1798 -2.5746 -1.7275 9 6 7.4953 -2.4977 -1.7330 10 6 7.9838 -1.3980 -2.3143 11 16 6.6223 -0.4339 -2.8810 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7287 3.5878 16 16 2.7105 0.4346 4.9731 17 6 3.3121 -0.6309 6.2408 18 1 3.5201 -1.6677 6.0212 19 6 3.5178 -0.1380 7.5220 20 7 3.2629 1.1252 7.7900 21 14 4.1550 -1.2680 8.8662 22 1 5.6395 -1.2306 8.8817 23 1 3.6347 -0.8151 10.1813 24 1 3.6974 -2.6562 8.6042 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 -1.2951 29 1 1.7516 -0.1583 -2.1370 30 1 3.9280 0.0825 -1.0824 31 1 3.6095 -2.5199 -2.4294 32 1 3.7558 -0.9588 -3.2719 33 1 8.1268 -3.2592 -1.2996 34 1 9.0286 -1.1446 -2.4178 35 1 2.2490 -1.6316 1.1527 36 1 1.9759 -1.5504 3.8327 37 1 3.6480 -1.1212 3.3986 38 1 3.4070 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497788783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:31 Heat of formation + Delta-G solvation = 7.643153 kcal Electronic energy + Delta-G solvation = -20662.421116 eV Core-core repulsion = 17371.967691 eV Total energy + Delta-G solvation = -3290.453425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94518 -39.30705 -37.09417 -34.63332 -32.37467 -31.66627 -30.59688 -28.43307 -27.73774 -25.43140 -25.01432 -23.34617 -21.59936 -20.34827 -20.09262 -18.35558 -17.75472 -16.72859 -16.32644 -15.75010 -15.70040 -15.17382 -14.76169 -14.72927 -14.50028 -14.09246 -14.05780 -13.75555 -13.33008 -13.09677 -12.69713 -12.53043 -12.33157 -12.28663 -11.93259 -11.83751 -11.61178 -11.02550 -10.97943 -10.96278 -10.70720 -9.90921 -9.75126 -9.72049 -9.30875 -9.25698 -9.01549 -8.82309 -8.72782 -8.16161 -6.42846 -6.16365 -3.85818 0.37440 1.03650 1.41747 2.53979 3.13083 3.23694 3.26416 3.32007 3.37778 3.64054 3.81996 4.00223 4.26225 4.58431 4.61688 4.86171 4.94306 4.99393 5.15979 5.18547 5.19525 5.23458 5.27549 5.35512 5.44704 5.60609 5.76198 5.83284 6.00786 6.03504 6.16212 6.26882 6.49772 6.79676 6.93700 7.46988 7.65339 7.91537 8.41068 8.77446 9.29108 10.91093 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.002972 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.429325 B = 9420.206839 C =11099.246321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.085 0.915 4 C 0.053 3.947 5 N -0.678 5.678 6 C 0.137 3.863 7 C 0.052 3.948 8 N -0.455 5.455 9 C 0.040 3.960 10 C -0.255 4.255 11 S 0.115 5.885 12 N -0.720 5.720 13 C 0.534 3.466 14 O -0.525 6.525 15 C -0.152 4.152 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.347 0.653 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -6.131 -26.213 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.103 0.897 4 C -0.077 4.077 5 N -0.310 5.310 6 C 0.005 3.995 7 C -0.227 4.227 8 N -0.170 5.170 9 C -0.112 4.112 10 C -0.395 4.395 11 S 0.368 5.632 12 N -0.374 5.374 13 C 0.320 3.680 14 O -0.400 6.400 15 C -0.302 4.302 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.166 0.834 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.194 0.806 34 H 0.195 0.805 35 H 0.236 0.764 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.347 -4.083 -25.897 26.322 hybrid contribution 1.546 -2.520 0.547 3.007 sum 3.893 -6.603 -25.350 26.484 Atomic orbital electron populations 1.22153 0.94993 1.02207 1.02791 1.20822 0.93846 0.97369 0.83940 0.89689 1.22332 0.87122 1.01434 0.96785 1.60311 1.05505 1.26375 1.38829 1.20437 0.85239 1.01761 0.92085 1.26961 1.01086 0.93847 1.00774 1.66224 1.07581 1.26629 1.16542 1.21889 0.89973 0.98533 1.00758 1.27121 1.03826 0.99452 1.09078 1.84043 0.98391 1.25654 1.55159 1.45859 1.68638 1.14133 1.08756 1.20249 0.76715 0.87147 0.83868 1.90680 1.48882 1.15818 1.84603 1.23515 1.03701 1.04679 0.98350 1.85332 1.86300 1.13077 0.98834 1.22885 1.50794 0.98148 0.96372 0.90974 1.24983 0.95153 0.95527 0.97928 1.70019 1.45684 1.13238 1.21473 0.86184 0.78999 0.80263 0.80153 1.20301 1.20796 1.19686 0.91297 0.92009 0.92405 0.89933 0.93504 0.83440 0.87835 0.92892 0.80575 0.80479 0.76409 0.89432 0.89282 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.15 1.61 2.81 -67.93 -0.19 1.42 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C 0.05 0.41 5.24 -3.83 -0.02 0.39 16 5 N -0.68 -6.06 6.21 -115.06 -0.71 -6.77 16 6 C 0.14 1.05 6.26 -4.98 -0.03 1.02 16 7 C 0.05 0.50 6.90 -13.45 -0.09 0.41 16 8 N -0.46 -5.22 10.54 -11.86 -0.13 -5.35 16 9 C 0.04 0.38 11.35 -19.19 -0.22 0.16 16 10 C -0.26 -2.04 11.36 29.12 0.33 -1.71 16 11 S 0.11 0.91 23.18 -107.50 -2.49 -1.58 16 12 N -0.72 -9.82 4.80 -53.81 -0.26 -10.08 16 13 C 0.53 10.16 7.81 -10.98 -0.09 10.08 16 14 O -0.52 -11.93 15.52 5.56 0.09 -11.85 16 15 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 16 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 17 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 18 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.60 13.22 55.49 0.73 -25.87 16 21 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.35 3.29 8.72 -39.30 -0.34 2.95 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.40 4.81 8.60 -40.82 -0.35 4.45 16 36 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 37 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -35.78 357.72 -9.43 -45.21 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.28 Total: 3.80 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.46 Total: -5.77 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.36 Total: -48.07 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -4.70 Total: -5.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.78 -9.43 -45.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497788783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.856 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds