Wall clock time and date at job start Tue Mar 31 2020 11:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46900 * 109.47418 * 184.99759 * 4 2 1 6 6 C 1.46896 * 110.99980 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.46891 * 180.02562 * 6 5 4 8 8 N 1.29034 * 124.91487 * 89.69920 * 7 6 5 9 9 C 1.31780 * 117.12251 * 179.81200 * 8 7 6 10 10 C 1.33634 * 114.50104 * 0.47677 * 9 8 7 11 11 S 1.70977 * 124.92135 * 270.00560 * 7 6 5 12 12 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 13 13 C 1.34777 * 120.00258 * 275.00436 * 12 2 1 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 2 16 16 S 1.81003 * 109.46853 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99846 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00030 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00513 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99570 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46946 * 90.00549 * 21 19 17 23 23 H 1.48504 * 109.46826 * 210.00017 * 21 19 17 24 24 H 1.48496 * 109.47486 * 329.99998 * 21 19 17 25 25 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 26 26 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 27 27 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 29 29 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 30 30 H 1.00893 * 111.00070 * 303.95821 * 5 4 2 31 31 H 1.08992 * 109.47616 * 300.00142 * 6 5 4 32 32 H 1.08998 * 109.47078 * 60.00837 * 6 5 4 33 33 H 1.08001 * 122.74223 * 180.22948 * 9 8 7 34 34 H 1.08006 * 126.03804 * 179.72054 * 10 9 8 35 35 H 0.96999 * 119.99694 * 94.99826 * 12 2 1 36 36 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 37 37 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 38 38 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8266 -1.1904 6 6 4.0302 -1.5159 -2.3761 7 6 5.5315 -1.6054 -2.2801 8 7 6.1798 -2.5746 -1.7275 9 6 7.4953 -2.4977 -1.7330 10 6 7.9838 -1.3980 -2.3143 11 16 6.6223 -0.4339 -2.8810 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7287 3.5878 16 16 2.7105 0.4346 4.9731 17 6 3.3121 -0.6309 6.2408 18 1 3.5201 -1.6677 6.0212 19 6 3.5178 -0.1380 7.5220 20 7 3.2629 1.1252 7.7900 21 14 4.1550 -1.2680 8.8662 22 1 5.6395 -1.2306 8.8817 23 1 3.6347 -0.8151 10.1813 24 1 3.6974 -2.6562 8.6042 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 -1.2951 29 1 1.7516 -0.1583 -2.1370 30 1 3.9280 0.0825 -1.0824 31 1 3.6095 -2.5199 -2.4294 32 1 3.7558 -0.9588 -3.2719 33 1 8.1268 -3.2592 -1.2996 34 1 9.0286 -1.1446 -2.4178 35 1 2.2490 -1.6316 1.1527 36 1 1.9759 -1.5504 3.8327 37 1 3.6480 -1.1212 3.3986 38 1 3.4070 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497788783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:31 Heat of formation + Delta-G solvation = -20.035479 kcal Electronic energy + Delta-G solvation = -20663.621352 eV Core-core repulsion = 17371.967691 eV Total energy + Delta-G solvation = -3291.653661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74243 -40.53782 -38.01484 -35.62813 -34.58300 -32.81554 -31.41645 -29.90856 -28.40757 -27.65262 -25.73284 -23.98030 -22.61441 -21.50539 -20.92520 -19.82751 -18.97730 -17.86273 -17.60026 -16.87921 -16.57200 -16.49282 -16.20480 -16.11436 -15.64697 -15.22483 -14.86856 -14.64731 -14.56498 -14.39837 -14.03422 -13.83064 -13.22364 -13.16175 -12.99885 -12.90357 -12.88825 -12.72225 -12.56344 -12.45713 -11.84652 -11.70056 -11.14140 -10.85190 -10.59468 -10.37752 -10.27098 -9.99693 -9.91353 -9.43239 -8.65274 -8.34398 -6.11973 -0.26470 0.42712 0.78169 1.28353 1.42063 1.47540 1.58956 1.71236 1.85926 2.27344 2.39843 2.99340 3.03380 3.31672 3.36849 3.82695 4.02039 4.08476 4.20843 4.31669 4.34447 4.40950 4.45868 4.53303 4.56194 4.63723 4.67668 4.77751 4.81387 5.09884 5.20394 5.31449 5.41763 5.62928 5.90572 6.20048 6.22656 6.63841 6.81678 7.06727 7.36393 8.74886 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.002972 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.429325 B = 9420.206839 C =11099.246321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.064 0.936 4 C 0.065 3.935 5 N -0.695 5.695 6 C 0.140 3.860 7 C 0.036 3.964 8 N -0.491 5.491 9 C 0.015 3.985 10 C -0.254 4.254 11 S 0.137 5.863 12 N -0.695 5.695 13 C 0.535 3.465 14 O -0.569 6.569 15 C -0.129 4.129 16 S -0.147 6.147 17 C -0.548 4.548 18 H 0.079 0.921 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.259 1.259 25 H 0.032 0.968 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.342 0.658 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.189 0.811 34 H 0.202 0.798 35 H 0.413 0.587 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -7.926 -27.784 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.065 4.065 5 N -0.327 5.327 6 C 0.008 3.992 7 C -0.242 4.242 8 N -0.207 5.207 9 C -0.135 4.135 10 C -0.393 4.393 11 S 0.390 5.610 12 N -0.347 5.347 13 C 0.321 3.679 14 O -0.448 6.448 15 C -0.280 4.280 16 S 0.080 5.920 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.183 1.183 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.160 0.840 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.206 0.794 34 H 0.219 0.781 35 H 0.250 0.750 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.686 -5.919 -27.525 28.282 hybrid contribution 1.442 -1.956 0.880 2.585 sum 4.128 -7.875 -26.645 28.090 Atomic orbital electron populations 1.22095 0.94025 1.03106 1.02349 1.21058 0.94569 0.96593 0.83994 0.91796 1.22263 0.86492 1.02203 0.95495 1.60296 1.06131 1.26209 1.40075 1.20498 0.84153 1.02059 0.92447 1.27310 1.02154 0.94009 1.00758 1.66237 1.08619 1.27987 1.17810 1.22188 0.89847 0.99686 1.01777 1.27477 1.05134 0.98808 1.07931 1.83921 0.97869 1.24786 1.54390 1.45676 1.66655 1.14463 1.07948 1.19921 0.76763 0.86533 0.84695 1.90669 1.51213 1.17585 1.85299 1.23361 1.05008 1.03152 0.96507 1.85471 1.86672 1.17272 1.02621 1.23208 1.51041 0.98391 0.96969 0.90247 1.26118 0.95033 0.97241 1.00671 1.70177 1.46776 1.15455 1.22305 0.84965 0.78522 0.78187 0.76369 1.19299 1.20085 1.18301 0.94891 0.89323 0.90781 0.88320 0.90767 0.84047 0.87646 0.90424 0.79401 0.78098 0.75011 0.87733 0.88147 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.48 71.98 0.68 -2.26 16 2 C 0.14 2.93 2.81 44.99 0.13 3.05 16 3 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 4 C 0.06 0.80 5.24 86.30 0.45 1.25 16 5 N -0.69 -10.95 6.21 -517.95 -3.22 -14.16 16 6 C 0.14 1.83 6.26 85.56 0.54 2.37 16 7 C 0.04 0.64 6.90 88.52 0.61 1.25 16 8 N -0.49 -10.89 10.54 -191.44 -2.02 -12.91 16 9 C 0.02 0.28 11.35 83.66 0.95 1.23 16 10 C -0.25 -3.69 11.36 66.77 0.76 -2.94 16 11 S 0.14 1.97 23.18 -56.49 -1.31 0.66 16 12 N -0.69 -18.12 4.80 -442.54 -2.12 -20.25 16 13 C 0.54 20.45 7.81 87.66 0.68 21.14 16 14 O -0.57 -26.68 15.52 -3.03 -0.05 -26.73 16 15 C -0.13 -5.43 6.16 71.24 0.44 -4.99 16 16 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 17 C -0.55 -32.32 9.50 67.96 0.65 -31.67 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.90 13.22 21.65 0.29 -56.61 16 21 Si 1.00 44.62 29.55 68.60 2.03 46.65 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.34 5.98 8.72 -89.70 -0.78 5.20 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.41 9.01 8.60 -92.71 -0.80 8.21 16 36 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 37 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 38 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -80.57 357.72 -1.71 -82.28 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -0.49 Total: 20.97 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 6.35 Total: -10.29 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -7.07 Total: -103.93 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -2.47 Total: -8.95 kcal Total: -80.57 -1.71 -82.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497788783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.244 kcal (2) G-P(sol) polarization free energy of solvation -80.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds