Wall clock time and date at job start Tue Mar 31 2020 10:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46569 * 202.91862 * 3 2 1 5 5 C 1.36870 * 119.99771 * 263.98854 * 4 3 2 6 6 H 1.08005 * 120.00047 * 197.59593 * 5 4 3 7 7 C 1.39041 * 120.00099 * 17.59450 * 5 4 3 8 8 N 1.31360 * 120.00349 * 13.68438 * 7 5 4 9 9 Si 1.86803 * 120.00128 * 193.68356 * 7 5 4 10 10 H 1.48498 * 109.47498 * 89.99855 * 9 7 5 11 11 H 1.48497 * 109.47309 * 210.00134 * 9 7 5 12 12 H 1.48507 * 109.46770 * 329.99962 * 9 7 5 13 13 C 1.34773 * 120.00645 * 83.98995 * 4 3 2 14 14 O 1.21636 * 119.99214 * 5.08616 * 13 4 3 15 15 C 1.47455 * 120.00557 * 185.08590 * 13 4 3 16 16 C 1.39840 * 120.05546 * 43.73260 * 15 13 4 17 17 C 1.37562 * 119.99424 * 180.02562 * 16 15 13 18 18 C 1.39576 * 120.10794 * 359.97438 * 17 16 15 19 19 C 1.48353 * 119.94500 * 180.02562 * 18 17 16 20 20 N 1.34082 * 126.67990 * 359.68393 * 19 18 17 21 21 N 1.28988 * 107.26418 * 179.83656 * 20 19 18 22 22 N 1.28734 * 108.95472 * 0.43951 * 21 20 19 23 23 H 0.96996 * 125.33818 * 179.74583 * 22 21 20 24 24 N 1.28873 * 109.33073 * 359.72074 * 22 21 20 25 25 C 1.39351 * 120.10854 * 0.02562 * 18 17 16 26 26 C 1.38018 * 120.00400 * 359.97438 * 25 18 17 27 27 F 1.35103 * 120.04541 * 179.97438 * 26 25 18 28 28 H 4.40632 * 5.51433 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47257 * 82.92456 * 3 2 1 30 30 H 1.08992 * 109.47391 * 322.91403 * 3 2 1 31 31 H 0.96999 * 120.00422 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.00420 * 0.03875 * 16 15 13 33 33 H 1.08006 * 119.94550 * 179.72377 * 17 16 15 34 34 H 1.07992 * 119.99463 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.2731 0.5379 5 6 3.4782 2.2885 -0.3127 6 1 4.0925 3.1037 0.0403 7 6 3.0376 2.2705 -1.6314 8 7 2.0848 1.4423 -1.9943 9 14 3.8007 3.4241 -2.8870 10 1 4.9638 2.7592 -3.5275 11 1 2.7929 3.7647 -3.9230 12 1 4.2521 4.6655 -2.2084 13 6 3.2429 1.4440 1.8703 14 8 3.0256 0.5131 2.6225 15 6 3.6259 2.7592 2.4161 16 6 3.0504 3.9253 1.9019 17 6 3.4090 5.1517 2.4117 18 6 4.3465 5.2345 3.4424 19 6 4.7301 6.5589 3.9899 20 7 4.2683 7.7536 3.5936 21 7 4.8470 8.6481 4.3207 22 7 5.6505 8.0650 5.1403 23 1 6.2090 8.5144 5.7937 24 7 5.5962 6.7906 4.9569 25 6 4.9227 4.0752 3.9580 26 6 4.5663 2.8424 3.4500 27 9 5.1248 1.7180 3.9489 28 1 -1.0502 -0.0003 -0.0003 29 1 3.0094 -0.1258 -1.0198 30 1 3.0097 -0.8189 0.6196 31 1 1.7777 1.4295 -2.9143 32 1 2.3243 3.8632 1.1048 33 1 2.9673 6.0522 2.0110 34 1 5.6476 4.1414 4.7558 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573283606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:52 Heat of formation + Delta-G solvation = 148.236960 kcal Electronic energy + Delta-G solvation = -25082.407921 eV Core-core repulsion = 21128.686724 eV Total energy + Delta-G solvation = -3953.721197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.39469 -44.54063 -39.41429 -37.89632 -35.22377 -34.45061 -33.60850 -32.04343 -31.61882 -30.50602 -30.18967 -26.74476 -25.44837 -24.75834 -24.20060 -22.17074 -21.91128 -19.70652 -19.31366 -18.28863 -17.23462 -17.16700 -16.94805 -16.27258 -15.94624 -15.23392 -15.04393 -14.68745 -14.40170 -14.05871 -13.98001 -13.76388 -13.17157 -12.80294 -12.56369 -12.52675 -12.16922 -12.09011 -11.87663 -11.56459 -11.44846 -11.32215 -11.15844 -10.95270 -10.90862 -10.57450 -10.51067 -9.53033 -9.41686 -8.81371 -8.73702 -8.55247 -8.29189 -8.05266 -6.52185 -4.10431 0.59925 1.08343 1.50258 2.11472 2.25637 3.03231 3.14065 3.15728 3.51508 3.57136 3.76854 4.02069 4.07188 4.08717 4.22039 4.62749 4.78855 4.88729 5.05701 5.22216 5.32806 5.36286 5.56847 5.61579 5.73127 6.01918 6.21845 6.28730 6.35259 6.56114 6.65532 6.67671 6.88324 7.07184 7.12365 7.22221 7.47667 8.04262 8.16835 8.84998 8.91282 9.22640 9.64879 10.44710 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.004375 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.586466 B = 6397.858280 C = 7574.066858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.099 4.099 3 C 0.237 3.763 4 N -0.420 5.420 5 C -0.342 4.342 6 H 0.107 0.893 7 C 0.040 3.960 8 N -0.850 5.850 9 Si 0.921 3.079 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.486 3.514 14 O -0.589 6.589 15 C -0.093 4.093 16 C -0.046 4.046 17 C -0.098 4.098 18 C 0.000 4.000 19 C 0.230 3.770 20 N -0.264 5.264 21 N -0.053 5.053 22 N -0.231 5.231 23 H 0.474 0.526 24 N -0.295 5.295 25 C -0.127 4.127 26 C 0.128 3.872 27 F -0.124 7.124 28 H 0.199 0.801 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.274 0.726 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 9.993 7.451 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.100 4.100 3 C 0.115 3.885 4 N -0.135 5.135 5 C -0.470 4.470 6 H 0.124 0.876 7 C -0.167 4.167 8 N -0.486 5.486 9 Si 0.747 3.253 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.190 1.190 13 C 0.275 3.725 14 O -0.475 6.475 15 C -0.098 4.098 16 C -0.065 4.065 17 C -0.118 4.118 18 C -0.004 4.004 19 C -0.050 4.050 20 N -0.137 5.137 21 N -0.048 5.048 22 N -0.076 5.076 23 H 0.328 0.672 24 N -0.146 5.146 25 C -0.149 4.149 26 C 0.107 3.893 27 F -0.102 7.102 28 H 0.216 0.784 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.170 10.086 7.637 13.667 hybrid contribution 0.580 0.381 -0.339 0.772 sum 5.751 10.467 7.299 13.996 Atomic orbital electron populations 1.24226 0.95344 1.03235 1.06295 1.23084 0.94242 0.97340 0.95376 1.18231 0.84242 0.85403 1.00597 1.43588 1.53706 1.12614 1.03633 1.19845 1.31341 1.03942 0.91824 0.87586 1.25346 0.94933 0.97939 0.98501 1.70032 1.23384 1.36055 1.19087 0.85994 0.78870 0.80298 0.80123 1.20065 1.20698 1.18974 1.17726 0.84776 0.87150 0.82851 1.90704 1.57017 1.41703 1.58081 1.20384 0.97023 0.96384 0.95968 1.21458 0.98071 0.89410 0.97516 1.21131 0.96684 0.98871 0.95134 1.16939 0.99744 0.85590 0.98098 1.23639 0.93710 0.94817 0.92814 1.76121 1.20776 0.97167 1.19630 1.78901 1.02726 1.22784 1.00402 1.47710 1.29754 1.02794 1.27360 0.67198 1.74979 1.21865 0.97779 1.20016 1.20818 1.02293 0.89766 1.01987 1.17420 0.94843 0.82142 0.94892 1.91534 1.83162 1.49619 1.85918 0.78429 0.86435 0.91429 0.91518 0.82380 0.84064 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.96 19.25 29.55 0.57 -5.39 16 2 C -0.10 -2.36 11.65 -37.12 -0.43 -2.80 16 3 C 0.24 5.61 5.10 -6.83 -0.03 5.58 16 4 N -0.42 -10.13 2.60 -119.15 -0.31 -10.44 16 5 C -0.34 -7.96 7.57 -15.00 -0.11 -8.07 16 6 H 0.11 2.36 5.84 -52.48 -0.31 2.05 16 7 C 0.04 0.91 5.07 -17.46 -0.09 0.83 16 8 N -0.85 -20.40 9.06 55.50 0.50 -19.89 16 9 Si 0.92 18.13 29.57 -169.99 -5.03 13.10 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 13 C 0.49 11.77 6.98 -12.51 -0.09 11.69 16 14 O -0.59 -15.80 16.06 5.25 0.08 -15.72 16 15 C -0.09 -1.90 5.04 -104.88 -0.53 -2.43 16 16 C -0.05 -0.83 7.65 -39.23 -0.30 -1.13 16 17 C -0.10 -1.51 9.68 -39.33 -0.38 -1.89 16 18 C 0.00 0.00 5.88 -104.82 -0.62 -0.61 16 19 C 0.23 3.20 7.93 -156.27 -1.24 1.96 16 20 N -0.26 -3.69 12.22 32.14 0.39 -3.29 16 21 N -0.05 -0.61 13.47 60.35 0.81 0.20 16 22 N -0.23 -2.02 7.90 60.35 0.48 -1.54 16 23 H 0.47 1.68 8.96 -340.36 -3.05 -1.37 16 24 N -0.29 -3.48 12.07 32.16 0.39 -3.09 16 25 C -0.13 -1.98 9.66 -39.25 -0.38 -2.36 16 26 C 0.13 2.40 7.24 -39.00 -0.28 2.12 16 27 F -0.12 -2.50 16.34 2.25 0.04 -2.47 16 28 H 0.20 3.51 7.80 -54.08 -0.42 3.09 16 29 H 0.12 2.78 6.17 -51.93 -0.32 2.46 16 30 H 0.07 1.56 7.54 -51.93 -0.39 1.17 16 31 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 32 H 0.16 2.97 6.89 -52.49 -0.36 2.61 16 33 H 0.14 1.93 7.87 -52.48 -0.41 1.51 16 34 H 0.14 1.91 7.87 -52.49 -0.41 1.49 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -30.28 316.55 -6.60 -36.88 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.81 Total: 4.00 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -3.91 Total: -2.51 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 2.26 Total: -38.06 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.08 Total: -15.72 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.28 -6.60 -36.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573283606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.117 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds