Wall clock time and date at job start Tue Mar 31 2020 10:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46569 * 202.91862 * 3 2 1 5 5 C 1.36870 * 119.99771 * 263.98854 * 4 3 2 6 6 H 1.08005 * 120.00047 * 197.59593 * 5 4 3 7 7 C 1.39041 * 120.00099 * 17.59450 * 5 4 3 8 8 N 1.31360 * 120.00349 * 13.68438 * 7 5 4 9 9 Si 1.86803 * 120.00128 * 193.68356 * 7 5 4 10 10 H 1.48498 * 109.47498 * 89.99855 * 9 7 5 11 11 H 1.48497 * 109.47309 * 210.00134 * 9 7 5 12 12 H 1.48507 * 109.46770 * 329.99962 * 9 7 5 13 13 C 1.34773 * 120.00645 * 83.98995 * 4 3 2 14 14 O 1.21636 * 119.99214 * 5.08616 * 13 4 3 15 15 C 1.47455 * 120.00557 * 185.08590 * 13 4 3 16 16 C 1.39840 * 120.05546 * 43.73260 * 15 13 4 17 17 C 1.37562 * 119.99424 * 180.02562 * 16 15 13 18 18 C 1.39576 * 120.10794 * 359.97438 * 17 16 15 19 19 C 1.48353 * 119.94500 * 180.02562 * 18 17 16 20 20 N 1.34082 * 126.67990 * 359.68393 * 19 18 17 21 21 N 1.28988 * 107.26418 * 179.83656 * 20 19 18 22 22 N 1.28734 * 108.95472 * 0.43951 * 21 20 19 23 23 H 0.96996 * 125.33818 * 179.74583 * 22 21 20 24 24 N 1.28873 * 109.33073 * 359.72074 * 22 21 20 25 25 C 1.39351 * 120.10854 * 0.02562 * 18 17 16 26 26 C 1.38018 * 120.00400 * 359.97438 * 25 18 17 27 27 F 1.35103 * 120.04541 * 179.97438 * 26 25 18 28 28 H 4.40632 * 5.51433 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47257 * 82.92456 * 3 2 1 30 30 H 1.08992 * 109.47391 * 322.91403 * 3 2 1 31 31 H 0.96999 * 120.00422 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.00420 * 0.03875 * 16 15 13 33 33 H 1.08006 * 119.94550 * 179.72377 * 17 16 15 34 34 H 1.07992 * 119.99463 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.2731 0.5379 5 6 3.4782 2.2885 -0.3127 6 1 4.0925 3.1037 0.0403 7 6 3.0376 2.2705 -1.6314 8 7 2.0848 1.4423 -1.9943 9 14 3.8007 3.4241 -2.8870 10 1 4.9638 2.7592 -3.5275 11 1 2.7929 3.7647 -3.9230 12 1 4.2521 4.6655 -2.2084 13 6 3.2429 1.4440 1.8703 14 8 3.0256 0.5131 2.6225 15 6 3.6259 2.7592 2.4161 16 6 3.0504 3.9253 1.9019 17 6 3.4090 5.1517 2.4117 18 6 4.3465 5.2345 3.4424 19 6 4.7301 6.5589 3.9899 20 7 4.2683 7.7536 3.5936 21 7 4.8470 8.6481 4.3207 22 7 5.6505 8.0650 5.1403 23 1 6.2090 8.5144 5.7937 24 7 5.5962 6.7906 4.9569 25 6 4.9227 4.0752 3.9580 26 6 4.5663 2.8424 3.4500 27 9 5.1248 1.7180 3.9489 28 1 -1.0502 -0.0003 -0.0003 29 1 3.0094 -0.1258 -1.0198 30 1 3.0097 -0.8189 0.6196 31 1 1.7777 1.4295 -2.9143 32 1 2.3243 3.8632 1.1048 33 1 2.9673 6.0522 2.0110 34 1 5.6476 4.1414 4.7558 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573283606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:52 Heat of formation + Delta-G solvation = 129.536376 kcal Electronic energy + Delta-G solvation = -25083.218839 eV Core-core repulsion = 21128.686724 eV Total energy + Delta-G solvation = -3954.532115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.90146 -45.48125 -41.04596 -39.42354 -37.07851 -35.43415 -34.71688 -33.80937 -33.33612 -31.88972 -31.53616 -28.48259 -27.04833 -25.85067 -25.54732 -23.48636 -23.16131 -21.38646 -20.28282 -19.99390 -18.82246 -18.29293 -18.15970 -18.02446 -17.39184 -16.73074 -16.51125 -16.30374 -16.07003 -15.73997 -15.28277 -15.08431 -14.66628 -14.33451 -14.10359 -13.92343 -13.71510 -13.62170 -13.32523 -13.02089 -12.77694 -12.60815 -12.50558 -12.38769 -12.10491 -12.07662 -11.81637 -11.29846 -11.23929 -10.62876 -10.51606 -9.96327 -9.88889 -9.66519 -8.28331 -5.93935 -0.64550 0.12157 0.16599 1.05815 1.40006 1.46873 1.52690 1.62489 1.88934 2.03649 2.33744 2.41313 2.49520 2.60752 2.98030 3.02498 3.14863 3.36651 3.80519 3.89870 3.97701 4.07143 4.16612 4.26335 4.37601 4.64402 4.74839 4.94171 5.01637 5.05413 5.23902 5.27817 5.39894 5.42153 5.62030 5.66748 5.70375 6.36212 7.04664 7.09269 7.12075 7.40857 7.83291 8.68822 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.004375 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.586466 B = 6397.858280 C = 7574.066858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.147 4.147 3 C 0.239 3.761 4 N -0.426 5.426 5 C -0.355 4.355 6 H 0.114 0.886 7 C 0.006 3.994 8 N -0.873 5.873 9 Si 0.984 3.016 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.255 1.255 13 C 0.473 3.527 14 O -0.629 6.629 15 C -0.123 4.123 16 C -0.045 4.045 17 C -0.084 4.084 18 C 0.017 3.983 19 C 0.212 3.788 20 N -0.283 5.283 21 N -0.052 5.052 22 N -0.196 5.196 23 H 0.496 0.504 24 N -0.287 5.287 25 C -0.111 4.111 26 C 0.114 3.886 27 F -0.138 7.138 28 H 0.237 0.763 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.274 0.726 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 13.041 8.045 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.148 4.148 3 C 0.116 3.884 4 N -0.141 5.141 5 C -0.482 4.482 6 H 0.132 0.868 7 C -0.198 4.198 8 N -0.509 5.509 9 Si 0.808 3.192 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.179 1.179 13 C 0.264 3.736 14 O -0.519 6.519 15 C -0.127 4.127 16 C -0.063 4.063 17 C -0.104 4.104 18 C 0.013 3.987 19 C -0.067 4.067 20 N -0.156 5.156 21 N -0.047 5.047 22 N -0.047 5.047 23 H 0.355 0.645 24 N -0.140 5.140 25 C -0.131 4.131 26 C 0.094 3.906 27 F -0.117 7.117 28 H 0.254 0.746 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.181 0.819 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.882 13.167 8.239 16.609 hybrid contribution 0.389 -0.440 -0.400 0.710 sum 6.271 12.727 7.840 16.210 Atomic orbital electron populations 1.25150 0.96330 1.01286 1.04314 1.23392 0.94962 0.99219 0.97237 1.18126 0.84867 0.85454 0.99916 1.43786 1.53447 1.12847 1.04001 1.20105 1.31780 1.04206 0.92078 0.86822 1.26084 0.94954 0.99154 0.99645 1.70144 1.24281 1.37231 1.19262 0.85035 0.77724 0.78806 0.77647 1.20164 1.20912 1.17859 1.18324 0.84398 0.88260 0.82635 1.90643 1.58855 1.43457 1.58904 1.20212 0.99463 0.95246 0.97824 1.21286 0.97942 0.89646 0.97463 1.21264 0.96138 0.98361 0.94662 1.17008 0.98361 0.86262 0.97021 1.23342 0.95066 0.94312 0.94005 1.76114 1.21616 0.97268 1.20562 1.78869 1.02988 1.22275 1.00587 1.47784 1.28518 1.01918 1.26523 0.64453 1.74939 1.20981 0.98955 1.19101 1.20946 1.02001 0.88368 1.01820 1.17615 0.95166 0.82832 0.95004 1.91493 1.83399 1.50671 1.86093 0.74646 0.87094 0.92221 0.91593 0.83602 0.81872 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.00 19.25 74.32 1.43 -9.57 16 2 C -0.15 -7.20 11.65 31.13 0.36 -6.84 16 3 C 0.24 11.86 5.10 84.57 0.43 12.29 16 4 N -0.43 -21.41 2.60 -649.12 -1.69 -23.10 16 5 C -0.35 -16.81 7.57 84.10 0.64 -16.18 16 6 H 0.11 5.09 5.84 -2.91 -0.02 5.07 16 7 C 0.01 0.28 5.07 84.96 0.43 0.71 16 8 N -0.87 -42.51 9.06 21.68 0.20 -42.31 16 9 Si 0.98 36.81 29.57 68.60 2.03 38.83 16 10 H -0.28 -10.32 7.11 99.48 0.71 -9.61 16 11 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 12 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 13 C 0.47 23.96 6.98 86.67 0.61 24.56 16 14 O -0.63 -35.55 16.06 -4.14 -0.07 -35.62 16 15 C -0.12 -5.15 5.04 -20.03 -0.10 -5.25 16 16 C -0.04 -1.60 7.65 22.50 0.17 -1.43 16 17 C -0.08 -2.44 9.68 22.43 0.22 -2.22 16 18 C 0.02 0.48 5.88 -19.99 -0.12 0.36 16 19 C 0.21 5.23 7.93 137.32 1.09 6.31 16 20 N -0.28 -7.01 12.22 -52.21 -0.64 -7.65 16 21 N -0.05 -1.02 13.47 37.02 0.50 -0.52 16 22 N -0.20 -2.66 7.90 37.02 0.29 -2.37 16 23 H 0.50 1.41 8.96 -347.53 -3.12 -1.71 16 24 N -0.29 -5.69 12.07 -52.16 -0.63 -6.32 16 25 C -0.11 -3.23 9.66 22.49 0.22 -3.01 16 26 C 0.11 4.30 7.24 22.65 0.16 4.46 16 27 F -0.14 -5.70 16.34 44.97 0.73 -4.96 16 28 H 0.24 7.91 7.80 -4.41 -0.03 7.87 16 29 H 0.11 5.54 6.17 -2.39 -0.01 5.53 16 30 H 0.06 2.96 7.54 -2.39 -0.02 2.94 16 31 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 32 H 0.15 5.57 6.89 -2.91 -0.02 5.55 16 33 H 0.16 4.02 7.87 -2.91 -0.02 4.00 16 34 H 0.17 4.00 7.87 -2.91 -0.02 3.97 16 Total: -1.00 -66.84 316.55 4.35 -62.49 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -1.91 Total: 17.32 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 5.54 Total: 4.21 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.97 Total: -82.27 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.07 Total: -35.62 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.73 Total: -4.96 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.83 kcal Total: -66.84 4.35 -62.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573283606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.025 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds