Wall clock time and date at job start Tue Mar 31 2020 10:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46893 * 135.17606 * 3 2 1 5 5 C 1.36841 * 120.00072 * 263.20225 * 4 3 2 6 6 H 1.08002 * 120.00500 * 202.69714 * 5 4 3 7 7 C 1.39064 * 119.99978 * 22.68919 * 5 4 3 8 8 N 1.31359 * 119.99949 * 5.13288 * 7 5 4 9 9 Si 1.86796 * 120.00199 * 185.13033 * 7 5 4 10 10 H 1.48502 * 109.47197 * 90.00207 * 9 7 5 11 11 H 1.48499 * 109.47039 * 209.99989 * 9 7 5 12 12 H 1.48500 * 109.47346 * 330.00051 * 9 7 5 13 13 C 1.34782 * 120.00421 * 83.20531 * 4 3 2 14 14 O 1.21614 * 119.99904 * 185.01678 * 13 4 3 15 15 C 1.47510 * 119.99413 * 5.01052 * 13 4 3 16 16 C 1.39589 * 120.20339 * 53.46337 * 15 13 4 17 17 C 1.37919 * 120.01108 * 179.73808 * 16 15 13 18 18 C 1.38493 * 120.43224 * 0.51042 * 17 16 15 19 19 C 1.38287 * 120.41463 * 359.76333 * 18 17 16 20 20 F 1.35098 * 120.01133 * 179.97438 * 19 18 17 21 21 C 1.39372 * 119.97578 * 359.97438 * 19 18 17 22 22 C 1.48236 * 120.21399 * 179.97438 * 21 19 18 23 23 N 1.34125 * 126.68610 * 186.34404 * 22 21 19 24 24 N 1.28983 * 107.25700 * 179.97438 * 23 22 21 25 25 N 1.28727 * 108.97208 * 0.02562 * 24 23 22 26 26 H 0.96995 * 125.33136 * 180.02562 * 25 24 23 27 27 N 1.28876 * 109.33711 * 359.76304 * 25 24 23 28 28 H 4.40637 * 5.51445 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47598 * 15.17683 * 3 2 1 30 30 H 1.09002 * 109.47093 * 255.17393 * 3 2 1 31 31 H 0.96996 * 119.99807 * 179.97438 * 8 7 5 32 32 H 1.07994 * 119.99821 * 359.96665 * 16 15 13 33 33 H 1.08001 * 119.78466 * 180.23346 * 17 16 15 34 34 H 1.08001 * 119.79096 * 179.74382 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9805 -0.9737 5 6 3.4943 0.5756 -2.2301 6 1 4.1750 1.1751 -2.8163 7 6 2.9843 -0.6081 -2.7522 8 7 2.0800 -1.2856 -2.0822 9 14 3.5849 -1.2347 -4.4062 10 1 4.7590 -2.1210 -4.2031 11 1 2.4980 -1.9976 -5.0709 12 1 3.9753 -0.0838 -5.2596 13 6 3.2277 2.2810 -0.6320 14 8 3.5450 3.1074 -1.4659 15 6 2.9453 2.7017 0.7533 16 6 3.6070 2.0926 1.8209 17 6 3.3439 2.4928 3.1143 18 6 2.4171 3.4909 3.3649 19 6 1.7472 4.1024 2.3211 20 9 0.8443 5.0748 2.5750 21 6 2.0037 3.7152 1.0071 22 6 1.2883 4.3667 -0.1159 23 7 1.3437 4.0199 -1.4103 24 7 0.5798 4.8330 -2.0574 25 7 0.0556 5.6653 -1.2270 26 1 -0.5579 6.3794 -1.4604 27 7 0.4694 5.3977 -0.0361 28 1 -1.0502 -0.0001 0.0003 29 1 3.0098 -0.9910 -0.2690 30 1 3.0092 0.2638 0.9935 31 1 1.7240 -2.1111 -2.4465 32 1 4.3277 1.3104 1.6339 33 1 3.8607 2.0216 3.9373 34 1 2.2161 3.7934 4.3821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:47 Heat of formation + Delta-G solvation = 170.305632 kcal Electronic energy + Delta-G solvation = -26335.347900 eV Core-core repulsion = 22382.583673 eV Total energy + Delta-G solvation = -3952.764227 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.70155 -43.91161 -39.57295 -37.52264 -35.16767 -33.86595 -33.16270 -32.15583 -31.26244 -30.54437 -30.10524 -26.44332 -25.29724 -24.36909 -24.02513 -22.65447 -21.45137 -19.75549 -18.72010 -17.84420 -17.39830 -16.66865 -16.56663 -16.40596 -16.02151 -15.46900 -15.30443 -14.62705 -14.25213 -14.11397 -13.92539 -13.48916 -13.07521 -12.74187 -12.58540 -12.25476 -12.02828 -11.75802 -11.53640 -11.36041 -11.29245 -11.02963 -10.81046 -10.60570 -10.52966 -10.42104 -10.27113 -9.38477 -9.26373 -8.82464 -8.62384 -8.45283 -8.34400 -7.78018 -6.28929 -3.86249 0.80930 1.19144 1.66190 2.64243 2.75250 3.17748 3.27133 3.32369 3.58182 3.73994 4.00978 4.10546 4.13262 4.23855 4.34165 4.57183 4.77575 4.99012 5.14008 5.28630 5.36139 5.48856 5.58738 5.61520 5.87966 5.98617 6.14162 6.18418 6.31665 6.40311 6.49828 6.78188 6.90022 6.90721 7.13200 7.54592 8.06257 8.45968 8.69382 8.89313 9.15225 9.33368 9.91820 10.69248 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.005922 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.239700 B = 4726.895968 C = 5601.207425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.102 4.102 3 C 0.219 3.781 4 N -0.426 5.426 5 C -0.291 4.291 6 H 0.104 0.896 7 C 0.029 3.971 8 N -0.869 5.869 9 Si 0.929 3.071 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.486 3.514 14 O -0.543 6.543 15 C -0.023 4.023 16 C -0.118 4.118 17 C -0.076 4.076 18 C -0.161 4.161 19 C 0.130 3.870 20 F -0.125 7.125 21 C -0.023 4.023 22 C 0.208 3.792 23 N -0.191 5.191 24 N -0.063 5.063 25 N -0.243 5.243 26 H 0.468 0.532 27 N -0.294 5.294 28 H 0.195 0.805 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.269 0.731 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 5.980 10.530 12.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.103 4.103 3 C 0.096 3.904 4 N -0.144 5.144 5 C -0.419 4.419 6 H 0.122 0.878 7 C -0.175 4.175 8 N -0.508 5.508 9 Si 0.756 3.244 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.274 3.726 14 O -0.423 6.423 15 C -0.029 4.029 16 C -0.136 4.136 17 C -0.095 4.095 18 C -0.181 4.181 19 C 0.109 3.891 20 F -0.103 7.103 21 C -0.029 4.029 22 C -0.071 4.071 23 N -0.064 5.064 24 N -0.059 5.059 25 N -0.087 5.087 26 H 0.321 0.679 27 N -0.146 5.146 28 H 0.212 0.788 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.719 6.304 9.374 11.426 hybrid contribution -0.796 0.132 -0.491 0.944 sum -2.514 6.436 8.883 11.254 Atomic orbital electron populations 1.24205 0.95366 1.04294 1.05256 1.23188 0.94357 0.96892 0.95902 1.18702 0.84321 0.96691 0.90644 1.43517 1.54966 1.03704 1.12215 1.19713 1.24539 1.05708 0.91938 0.87797 1.25415 0.95295 0.97366 0.99382 1.69929 1.26433 1.16334 1.38076 0.85867 0.78008 0.78843 0.81681 1.20356 1.20994 1.19301 1.17578 0.85696 0.83260 0.86114 1.90684 1.51159 1.50443 1.50061 1.20310 0.93127 0.92784 0.96655 1.21389 1.00661 1.00180 0.91420 1.21028 0.96146 0.95357 0.96944 1.21026 0.99355 0.99363 0.98308 1.17422 0.90659 0.88993 0.92049 1.91532 1.64501 1.59670 1.94606 1.17117 0.99122 0.99048 0.87590 1.23255 0.97470 0.93366 0.93048 1.76821 1.10983 1.16761 1.01884 1.79051 1.06932 0.99321 1.20570 1.47746 1.33330 1.25604 1.01973 0.67885 1.74960 1.15677 1.18017 1.05963 0.78785 0.85862 0.91764 0.92014 0.83835 0.84325 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.98 19.25 29.55 0.57 -5.41 16 2 C -0.10 -2.35 11.51 -37.12 -0.43 -2.78 16 3 C 0.22 4.81 4.87 -6.83 -0.03 4.77 16 4 N -0.43 -10.59 2.60 -119.13 -0.31 -10.90 16 5 C -0.29 -7.83 9.28 -15.01 -0.14 -7.97 16 6 H 0.10 2.91 7.44 -52.49 -0.39 2.52 16 7 C 0.03 0.74 5.21 -17.45 -0.09 0.65 16 8 N -0.87 -22.41 8.90 55.50 0.49 -21.91 16 9 Si 0.93 20.51 29.56 -169.99 -5.02 15.48 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 13 C 0.49 11.87 5.83 -12.48 -0.07 11.80 16 14 O -0.54 -15.05 14.27 5.27 0.08 -14.98 16 15 C -0.02 -0.45 4.97 -104.71 -0.52 -0.97 16 16 C -0.12 -1.80 7.62 -39.19 -0.30 -2.10 16 17 C -0.08 -0.90 10.02 -39.60 -0.40 -1.30 16 18 C -0.16 -2.03 10.01 -39.47 -0.39 -2.42 16 19 C 0.13 2.11 7.27 -39.14 -0.28 1.83 16 20 F -0.12 -2.01 15.85 2.25 0.04 -1.98 16 21 C -0.02 -0.46 5.91 -104.46 -0.62 -1.08 16 22 C 0.21 4.40 7.67 -156.26 -1.20 3.21 16 23 N -0.19 -4.52 8.89 32.13 0.29 -4.24 16 24 N -0.06 -1.25 13.47 60.35 0.81 -0.44 16 25 N -0.24 -3.74 7.90 60.35 0.48 -3.26 16 26 H 0.47 4.42 8.96 -340.35 -3.05 1.36 16 27 N -0.29 -5.28 11.12 32.15 0.36 -4.93 16 28 H 0.19 3.60 7.80 -54.08 -0.42 3.18 16 29 H 0.12 2.83 6.23 -51.93 -0.32 2.50 16 30 H 0.06 1.17 4.39 -51.93 -0.23 0.94 16 31 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.14 1.96 7.16 -52.49 -0.38 1.58 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -34.52 309.68 -6.80 -41.32 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.77 Total: 2.93 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -3.90 Total: -1.77 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 2.12 Total: -45.68 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.52 -6.80 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.630 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds