Wall clock time and date at job start Tue Mar 31 2020 10:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39925 * 126.57176 * 2 1 4 4 C 1.37776 * 106.85092 * 179.97438 * 3 2 1 5 5 C 1.47000 * 125.79302 * 180.02562 * 4 3 2 6 6 O 1.21680 * 119.99966 * 5.97689 * 5 4 3 7 7 N 1.34779 * 119.99562 * 186.25671 * 5 4 3 8 8 C 1.36648 * 119.99462 * 184.88913 * 7 5 4 9 9 H 1.08000 * 119.99773 * 240.62616 * 8 7 5 10 10 C 1.39156 * 120.00167 * 60.62850 * 8 7 5 11 11 N 1.31272 * 119.99580 * 41.95191 * 10 8 7 12 12 Si 1.86793 * 119.99999 * 221.95206 * 10 8 7 13 13 H 1.48496 * 109.47414 * 64.99783 * 12 10 8 14 14 H 1.48503 * 109.47205 * 185.00217 * 12 10 8 15 15 H 1.48502 * 109.47234 * 304.99375 * 12 10 8 16 16 C 1.39675 * 120.00258 * 4.88823 * 7 5 4 17 17 C 1.38985 * 120.08025 * 54.86626 * 16 7 5 18 18 C 1.38069 * 119.91734 * 179.81088 * 17 16 7 19 19 C 1.38317 * 120.08480 * 0.44664 * 18 17 16 20 20 C 1.38312 * 120.15550 * 359.78401 * 19 18 17 21 21 C 1.38075 * 120.08436 * 0.02562 * 20 19 18 22 22 O 1.34558 * 108.40685 * 0.26371 * 4 3 2 23 23 C 1.34631 * 109.46989 * 359.56576 * 22 4 3 24 24 C 1.46998 * 125.79046 * 180.15280 * 23 22 4 25 25 O 1.21554 * 120.00257 * 186.22980 * 24 23 22 26 26 O 1.34853 * 119.99859 * 6.23259 * 24 23 22 27 27 H 1.09003 * 109.46818 * 90.02288 * 1 2 3 28 28 H 1.08997 * 109.46797 * 210.02404 * 1 2 3 29 29 H 1.08999 * 109.47478 * 330.02799 * 1 2 3 30 30 H 1.07996 * 126.57192 * 359.97438 * 3 2 1 31 31 H 0.97009 * 119.99448 * 184.95264 * 11 10 8 32 32 H 1.08006 * 120.04315 * 0.02562 * 17 16 7 33 33 H 1.08007 * 119.95913 * 180.21122 * 18 17 16 34 34 H 1.07994 * 119.92498 * 179.76373 * 19 18 17 35 35 H 1.08008 * 119.95914 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.04058 * 179.97438 * 21 20 19 37 37 H 0.96699 * 116.99989 * 174.96559 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.1238 0.0000 4 6 3.6377 0.6588 0.0006 5 6 4.8493 1.4912 0.0013 6 8 4.7573 2.6995 0.1112 7 7 6.0618 0.9163 -0.1253 8 6 7.1924 1.6771 -0.0246 9 1 7.8769 1.7399 -0.8576 10 6 7.4618 2.3708 1.1512 11 7 7.2562 1.7967 2.3137 12 14 8.1160 4.1188 1.0754 13 1 7.0886 5.0062 0.4737 14 1 8.4335 4.5885 2.4479 15 1 9.3463 4.1513 0.2443 16 6 6.1625 -0.4570 -0.3596 17 6 5.4990 -1.0303 -1.4378 18 6 5.6041 -2.3875 -1.6685 19 6 6.3611 -3.1780 -0.8227 20 6 7.0190 -2.6116 0.2541 21 6 6.9216 -1.2544 0.4887 22 8 3.6068 -0.6864 -0.0049 23 6 2.3275 -1.1059 0.0005 24 6 1.8823 -2.5068 0.0003 25 8 0.7003 -2.7689 -0.1087 26 8 2.7850 -3.5013 0.1210 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 2.0275 2.1573 -0.0004 31 1 7.3751 2.3032 3.1325 32 1 4.9046 -0.4144 -2.0965 33 1 5.0915 -2.8332 -2.5082 34 1 6.4385 -4.2399 -1.0033 35 1 7.6089 -3.2319 0.9127 36 1 7.4353 -0.8130 1.3300 37 1 2.4395 -4.4017 0.1910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600078012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:17 Heat of formation + Delta-G solvation = -62.510030 kcal Electronic energy + Delta-G solvation = -26812.941103 eV Core-core repulsion = 22908.956034 eV Total energy + Delta-G solvation = -3903.985069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43728 -39.89984 -39.26132 -37.62709 -36.20731 -34.74486 -33.85019 -32.39901 -30.42362 -30.16553 -28.73871 -27.76022 -25.96277 -23.92328 -22.32731 -21.72398 -21.45971 -20.38153 -19.40726 -18.27617 -17.55734 -17.38630 -16.97148 -16.47863 -15.54245 -15.33524 -15.00612 -14.42385 -14.29398 -14.06579 -13.76511 -13.40265 -13.23972 -13.06391 -13.05000 -12.81011 -12.68233 -12.55360 -12.04193 -11.95586 -11.65318 -11.57515 -11.42633 -10.94056 -10.74768 -10.70875 -10.42324 -10.40412 -9.49043 -9.23415 -8.75244 -8.51724 -8.42338 -8.17931 -7.32153 -6.61999 -4.34498 0.78306 1.94506 2.08744 2.24412 2.59671 2.92604 3.17776 3.28521 3.40294 3.41540 3.95040 4.08028 4.38077 4.60159 4.80946 4.82177 5.06120 5.20183 5.51930 5.55036 5.58126 5.66587 5.70439 5.75939 5.84844 6.06630 6.10358 6.12400 6.32222 6.34656 6.52062 6.53713 6.75501 6.99474 7.08195 7.21006 7.31757 7.36064 7.61882 7.85209 8.06786 8.55489 8.61066 9.08985 9.64873 10.33614 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.005955 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.993506 B = 4701.085467 C = 6089.089374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.081 4.081 3 C -0.174 4.174 4 C 0.015 3.985 5 C 0.554 3.446 6 O -0.516 6.516 7 N -0.379 5.379 8 C -0.378 4.378 9 H 0.091 0.909 10 C 0.100 3.900 11 N -0.807 5.807 12 Si 0.897 3.103 13 H -0.262 1.262 14 H -0.287 1.287 15 H -0.270 1.270 16 C 0.150 3.850 17 C -0.133 4.133 18 C -0.105 4.105 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.105 4.105 22 O -0.112 6.112 23 C -0.082 4.082 24 C 0.575 3.425 25 O -0.504 6.504 26 O -0.495 6.495 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.166 0.834 31 H 0.275 0.725 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 -9.145 -3.266 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.194 4.194 4 C -0.042 4.042 5 C 0.342 3.658 6 O -0.395 6.395 7 N -0.092 5.092 8 C -0.502 4.502 9 H 0.108 0.892 10 C -0.116 4.116 11 N -0.435 5.435 12 Si 0.721 3.279 13 H -0.186 1.186 14 H -0.212 1.212 15 H -0.195 1.195 16 C 0.058 3.942 17 C -0.153 4.153 18 C -0.124 4.124 19 C -0.160 4.160 20 C -0.135 4.135 21 C -0.125 4.125 22 O -0.005 6.005 23 C -0.134 4.134 24 C 0.421 3.579 25 O -0.395 6.395 26 O -0.305 6.305 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.183 0.817 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -7.191 -8.380 -3.049 11.456 hybrid contribution -0.029 0.226 0.245 0.335 sum -7.220 -8.154 -2.803 11.246 Atomic orbital electron populations 1.20410 0.88006 1.03436 1.02930 1.20720 0.97256 0.90455 0.99837 1.21951 0.90173 1.00212 1.07104 1.23814 0.97589 0.80088 1.02659 1.17199 0.80758 0.86180 0.81656 1.90733 1.84375 1.12254 1.52180 1.40768 1.04757 1.02888 1.60824 1.18741 1.02373 1.29261 0.99824 0.89172 1.25461 0.93233 0.98984 0.93951 1.70183 1.39246 1.35562 0.98529 0.86531 0.79383 0.84564 0.77441 1.18640 1.21232 1.19504 1.18499 0.96562 0.85600 0.93520 1.20993 1.01702 0.95536 0.97084 1.20653 0.99360 0.93138 0.99271 1.20829 0.99821 0.98740 0.96571 1.20929 1.00016 0.94746 0.97785 1.21346 0.99613 0.92533 0.98959 1.84705 1.25880 1.21596 1.68338 1.20906 0.83396 0.91272 1.17808 1.18960 0.82976 0.83602 0.72399 1.90916 1.17518 1.83433 1.47601 1.84765 1.41426 1.19604 1.84738 0.90568 0.90064 0.91038 0.81689 0.91470 0.87529 0.87292 0.87303 0.86920 0.84548 0.72906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.76 36.01 0.35 -0.79 16 2 C -0.08 -1.30 6.21 -104.18 -0.65 -1.94 16 3 C -0.17 -3.13 10.60 -39.12 -0.41 -3.55 16 4 C 0.02 0.32 6.21 -36.20 -0.22 0.10 16 5 C 0.55 13.78 7.25 -12.71 -0.09 13.69 16 6 O -0.52 -14.04 16.34 5.21 0.09 -13.95 16 7 N -0.38 -9.48 2.60 -60.27 -0.16 -9.63 16 8 C -0.38 -10.04 8.17 -15.07 -0.12 -10.16 16 9 H 0.09 2.38 8.06 -52.49 -0.42 1.95 16 10 C 0.10 2.63 4.52 -17.45 -0.08 2.55 16 11 N -0.81 -21.54 13.88 55.51 0.77 -20.77 16 12 Si 0.90 20.72 29.69 -169.99 -5.05 15.67 16 13 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 C 0.15 3.34 4.34 -83.73 -0.36 2.97 16 17 C -0.13 -2.58 6.52 -39.37 -0.26 -2.83 16 18 C -0.11 -1.74 10.04 -39.61 -0.40 -2.14 16 19 C -0.14 -2.21 10.04 -39.52 -0.40 -2.61 16 20 C -0.12 -2.02 10.04 -39.61 -0.40 -2.41 16 21 C -0.10 -2.22 9.56 -39.36 -0.38 -2.60 16 22 O -0.11 -2.20 6.49 3.92 0.03 -2.17 16 23 C -0.08 -1.41 7.21 -36.23 -0.26 -1.67 16 24 C 0.58 8.58 8.31 34.28 0.29 8.86 16 25 O -0.50 -7.72 15.62 -19.30 -0.30 -8.03 16 26 O -0.49 -6.13 13.44 -42.30 -0.57 -6.70 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.04 6.59 -51.93 -0.34 0.70 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.17 2.72 8.06 -52.49 -0.42 2.29 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.11 2.05 7.65 -52.48 -0.40 1.65 16 33 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.14 3.19 8.04 -52.49 -0.42 2.77 16 37 H 0.41 2.74 9.11 45.56 0.42 3.15 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -31.08 334.44 -6.39 -37.48 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -2.84 Total: 5.62 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.39 Total: -2.54 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.61 Total: -30.41 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.76 Total: -30.85 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.05 Total: 15.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.08 -6.39 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600078012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.033 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds