Wall clock time and date at job start Tue Mar 31 2020 10:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39925 * 126.57176 * 2 1 4 4 C 1.37776 * 106.85092 * 179.97438 * 3 2 1 5 5 C 1.47000 * 125.79302 * 180.02562 * 4 3 2 6 6 O 1.21680 * 119.99966 * 5.97689 * 5 4 3 7 7 N 1.34779 * 119.99562 * 186.25671 * 5 4 3 8 8 C 1.36648 * 119.99462 * 184.88913 * 7 5 4 9 9 H 1.08000 * 119.99773 * 240.62616 * 8 7 5 10 10 C 1.39156 * 120.00167 * 60.62850 * 8 7 5 11 11 N 1.31272 * 119.99580 * 41.95191 * 10 8 7 12 12 Si 1.86793 * 119.99999 * 221.95206 * 10 8 7 13 13 H 1.48496 * 109.47414 * 64.99783 * 12 10 8 14 14 H 1.48503 * 109.47205 * 185.00217 * 12 10 8 15 15 H 1.48502 * 109.47234 * 304.99375 * 12 10 8 16 16 C 1.39675 * 120.00258 * 4.88823 * 7 5 4 17 17 C 1.38985 * 120.08025 * 54.86626 * 16 7 5 18 18 C 1.38069 * 119.91734 * 179.81088 * 17 16 7 19 19 C 1.38317 * 120.08480 * 0.44664 * 18 17 16 20 20 C 1.38312 * 120.15550 * 359.78401 * 19 18 17 21 21 C 1.38075 * 120.08436 * 0.02562 * 20 19 18 22 22 O 1.34558 * 108.40685 * 0.26371 * 4 3 2 23 23 C 1.34631 * 109.46989 * 359.56576 * 22 4 3 24 24 C 1.46998 * 125.79046 * 180.15280 * 23 22 4 25 25 O 1.21554 * 120.00257 * 186.22980 * 24 23 22 26 26 O 1.34853 * 119.99859 * 6.23259 * 24 23 22 27 27 H 1.09003 * 109.46818 * 90.02288 * 1 2 3 28 28 H 1.08997 * 109.46797 * 210.02404 * 1 2 3 29 29 H 1.08999 * 109.47478 * 330.02799 * 1 2 3 30 30 H 1.07996 * 126.57192 * 359.97438 * 3 2 1 31 31 H 0.97009 * 119.99448 * 184.95264 * 11 10 8 32 32 H 1.08006 * 120.04315 * 0.02562 * 17 16 7 33 33 H 1.08007 * 119.95913 * 180.21122 * 18 17 16 34 34 H 1.07994 * 119.92498 * 179.76373 * 19 18 17 35 35 H 1.08008 * 119.95914 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.04058 * 179.97438 * 21 20 19 37 37 H 0.96699 * 116.99989 * 174.96559 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.1238 0.0000 4 6 3.6377 0.6588 0.0006 5 6 4.8493 1.4912 0.0013 6 8 4.7573 2.6995 0.1112 7 7 6.0618 0.9163 -0.1253 8 6 7.1924 1.6771 -0.0246 9 1 7.8769 1.7399 -0.8576 10 6 7.4618 2.3708 1.1512 11 7 7.2562 1.7967 2.3137 12 14 8.1160 4.1188 1.0754 13 1 7.0886 5.0062 0.4737 14 1 8.4335 4.5885 2.4479 15 1 9.3463 4.1513 0.2443 16 6 6.1625 -0.4570 -0.3596 17 6 5.4990 -1.0303 -1.4378 18 6 5.6041 -2.3875 -1.6685 19 6 6.3611 -3.1780 -0.8227 20 6 7.0190 -2.6116 0.2541 21 6 6.9216 -1.2544 0.4887 22 8 3.6068 -0.6864 -0.0049 23 6 2.3275 -1.1059 0.0005 24 6 1.8823 -2.5068 0.0003 25 8 0.7003 -2.7689 -0.1087 26 8 2.7850 -3.5013 0.1210 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 2.0275 2.1573 -0.0004 31 1 7.3751 2.3032 3.1325 32 1 4.9046 -0.4144 -2.0965 33 1 5.0915 -2.8332 -2.5082 34 1 6.4385 -4.2399 -1.0033 35 1 7.6089 -3.2319 0.9127 36 1 7.4353 -0.8130 1.3300 37 1 2.4395 -4.4017 0.1910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600078012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:16 Heat of formation + Delta-G solvation = -81.672106 kcal Electronic energy + Delta-G solvation = -26813.772033 eV Core-core repulsion = 22908.956034 eV Total energy + Delta-G solvation = -3904.815999 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.85991 -41.18693 -40.79307 -39.26593 -37.28394 -36.50563 -35.18709 -34.29528 -31.90158 -31.59798 -30.31455 -28.89813 -27.70517 -25.50955 -23.74217 -23.18704 -22.91286 -21.84791 -20.98044 -19.47306 -19.30708 -18.77305 -18.34904 -17.86796 -17.17644 -16.93285 -16.34933 -16.24240 -15.95361 -15.63998 -15.06505 -14.87273 -14.59726 -14.55156 -14.25522 -14.15763 -14.08248 -13.92836 -13.71185 -13.45961 -13.21330 -13.01581 -12.70668 -12.63369 -12.34997 -12.15496 -11.91064 -11.84266 -11.10805 -10.82710 -10.71148 -10.23808 -9.85914 -9.62354 -9.05849 -8.54779 -6.36007 -0.60891 0.51263 0.63819 0.80822 1.24649 1.35765 1.41513 1.51535 1.69270 2.01239 2.23797 2.30649 2.64571 2.88284 3.12956 3.54692 3.60711 4.05715 4.14962 4.17943 4.26759 4.33199 4.43701 4.59079 4.72103 4.76957 4.85690 4.90028 4.98622 5.04340 5.20797 5.30011 5.31820 5.45838 5.61966 5.68934 5.77509 5.80534 6.04148 6.26512 6.66019 6.73549 6.89457 7.19579 7.76713 8.37243 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.005955 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.993506 B = 4701.085467 C = 6089.089374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.078 4.078 3 C -0.157 4.157 4 C -0.025 4.025 5 C 0.545 3.455 6 O -0.561 6.561 7 N -0.391 5.391 8 C -0.400 4.400 9 H 0.078 0.922 10 C 0.066 3.934 11 N -0.836 5.836 12 Si 0.948 3.052 13 H -0.282 1.282 14 H -0.274 1.274 15 H -0.253 1.253 16 C 0.119 3.881 17 C -0.136 4.136 18 C -0.097 4.097 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.131 4.131 22 O -0.120 6.120 23 C -0.085 4.085 24 C 0.585 3.415 25 O -0.505 6.505 26 O -0.492 6.492 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.176 0.824 31 H 0.277 0.723 32 H 0.099 0.901 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 -12.102 -4.160 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.177 4.177 4 C -0.081 4.081 5 C 0.335 3.665 6 O -0.444 6.444 7 N -0.104 5.104 8 C -0.525 4.525 9 H 0.096 0.904 10 C -0.148 4.148 11 N -0.465 5.465 12 Si 0.770 3.230 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.177 1.177 16 C 0.028 3.972 17 C -0.156 4.156 18 C -0.115 4.115 19 C -0.139 4.139 20 C -0.129 4.129 21 C -0.151 4.151 22 O -0.014 6.014 23 C -0.136 4.136 24 C 0.429 3.571 25 O -0.396 6.396 26 O -0.306 6.306 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.193 0.807 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.119 0.881 37 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -8.675 -11.402 -3.946 14.861 hybrid contribution 0.331 0.884 0.452 1.046 sum -8.344 -10.519 -3.495 13.874 Atomic orbital electron populations 1.20522 0.85095 1.04458 1.04266 1.21101 0.98939 0.89159 0.98843 1.22215 0.89368 1.01433 1.04728 1.23118 0.96892 0.80870 1.07177 1.17584 0.81865 0.86331 0.80704 1.90662 1.85470 1.13973 1.54335 1.40863 1.04453 1.04269 1.60822 1.18773 1.03095 1.30969 0.99615 0.90400 1.26105 0.93599 1.01408 0.93653 1.70216 1.41013 1.36424 0.98878 0.85742 0.78822 0.80383 0.78021 1.20770 1.19898 1.17715 1.18666 0.98745 0.84439 0.95329 1.21021 1.01416 0.97017 0.96163 1.21072 0.98724 0.91657 1.00049 1.21316 0.97242 1.00841 0.94507 1.21237 0.99891 0.93055 0.98736 1.21241 1.00684 0.94515 0.98668 1.84650 1.27221 1.20727 1.68803 1.21614 0.82707 0.93132 1.16190 1.18564 0.82962 0.83165 0.72387 1.90927 1.17619 1.83358 1.47694 1.84698 1.40950 1.20947 1.83985 0.88896 0.89943 0.89106 0.80679 0.91303 0.88238 0.83699 0.82579 0.84163 0.88070 0.69781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 9.76 71.24 0.70 -1.23 16 2 C -0.08 -2.39 6.21 -19.58 -0.12 -2.51 16 3 C -0.16 -5.65 10.60 22.57 0.24 -5.41 16 4 C -0.02 -1.08 6.21 24.46 0.15 -0.93 16 5 C 0.55 28.74 7.25 86.54 0.63 29.37 16 6 O -0.56 -32.51 16.34 -4.28 -0.07 -32.58 16 7 N -0.39 -20.75 2.60 -462.80 -1.20 -21.95 16 8 C -0.40 -22.62 8.17 84.16 0.69 -21.93 16 9 H 0.08 4.41 8.06 -2.91 -0.02 4.39 16 10 C 0.07 3.64 4.52 85.00 0.38 4.03 16 11 N -0.84 -47.08 13.88 21.70 0.30 -46.78 16 12 Si 0.95 44.40 29.69 68.60 2.04 46.43 16 13 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.25 -11.03 7.11 99.48 0.71 -10.32 16 16 C 0.12 5.49 4.34 38.25 0.17 5.65 16 17 C -0.14 -5.23 6.52 22.41 0.15 -5.08 16 18 C -0.10 -2.86 10.04 22.25 0.22 -2.63 16 19 C -0.12 -3.27 10.04 22.31 0.22 -3.04 16 20 C -0.11 -3.62 10.04 22.25 0.22 -3.40 16 21 C -0.13 -5.73 9.56 22.41 0.21 -5.51 16 22 O -0.12 -4.69 6.49 -8.03 -0.05 -4.75 16 23 C -0.08 -2.76 7.21 24.44 0.18 -2.59 16 24 C 0.58 15.55 8.31 70.12 0.58 16.14 16 25 O -0.50 -13.66 15.62 19.66 0.31 -13.36 16 26 O -0.49 -10.18 13.44 -56.33 -0.76 -10.94 16 27 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.84 6.59 -2.39 -0.02 1.82 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.18 5.79 8.06 -2.91 -0.02 5.76 16 31 H 0.28 14.64 8.31 -92.70 -0.77 13.87 16 32 H 0.10 3.89 7.65 -2.91 -0.02 3.87 16 33 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 34 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.10 5.07 8.04 -2.91 -0.02 5.05 16 37 H 0.44 3.73 9.11 -74.06 -0.67 3.06 16 Total: -1.00 -72.68 334.44 5.64 -67.04 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.46 Total: 15.96 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.62 Total: 0.92 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -0.90 Total: -68.73 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -0.57 Total: -61.62 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.04 Total: 46.43 kcal Total: -72.68 5.64 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600078012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.631 kcal (2) G-P(sol) polarization free energy of solvation -72.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds