Wall clock time and date at job start Tue Mar 31 2020 10:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46921 * 133.65497 * 3 2 1 5 5 C 1.36896 * 119.99956 * 275.00952 * 4 3 2 6 6 H 1.08000 * 119.99789 * 188.14487 * 5 4 3 7 7 C 1.39032 * 119.99833 * 8.14841 * 5 4 3 8 8 N 1.31376 * 120.00094 * 14.72652 * 7 5 4 9 9 Si 1.86796 * 119.99814 * 194.72099 * 7 5 4 10 10 H 1.48496 * 109.47015 * 60.00416 * 9 7 5 11 11 H 1.48504 * 109.47115 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47537 * 300.00318 * 9 7 5 13 13 C 1.34781 * 120.00166 * 95.00809 * 4 3 2 14 14 O 1.21603 * 119.99907 * 184.97693 * 13 4 3 15 15 C 1.47631 * 119.99637 * 4.97881 * 13 4 3 16 16 C 1.39787 * 120.07068 * 310.26580 * 15 13 4 17 17 C 1.37867 * 120.11692 * 179.97438 * 16 15 13 18 18 C 1.38495 * 120.24563 * 0.02562 * 17 16 15 19 19 F 1.35104 * 119.93056 * 179.97438 * 18 17 16 20 20 C 1.39672 * 120.13630 * 0.27514 * 18 17 16 21 21 C 1.48451 * 120.06095 * 179.70247 * 20 18 17 22 22 N 1.34044 * 126.67739 * 179.69116 * 21 20 18 23 23 N 1.28989 * 107.26959 * 179.83310 * 22 21 20 24 24 N 1.28731 * 108.94323 * 0.43026 * 23 22 21 25 25 H 0.96994 * 125.33973 * 179.75049 * 24 23 22 26 26 N 1.28874 * 109.31557 * 359.72423 * 24 23 22 27 27 C 1.38952 * 119.88260 * 359.44899 * 20 18 17 28 28 H 4.40640 * 5.51423 * 180.02562 * 4 1 2 29 29 H 1.08991 * 109.47569 * 13.65492 * 3 2 1 30 30 H 1.09004 * 109.47219 * 253.65148 * 3 2 1 31 31 H 0.96998 * 120.00032 * 179.97438 * 8 7 5 32 32 H 1.08007 * 119.94382 * 359.95807 * 16 15 13 33 33 H 1.07997 * 119.87671 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.12289 * 180.27485 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9544 -0.9993 5 6 3.2646 0.5692 -2.3065 6 1 3.7456 1.2250 -3.0171 7 6 2.7780 -0.6660 -2.7192 8 7 1.9491 -1.3356 -1.9507 9 14 3.3028 -1.3736 -4.3664 10 1 4.7778 -1.5449 -4.3841 11 1 2.6486 -2.6910 -4.5703 12 1 2.8990 -0.4472 -5.4545 13 6 3.4540 2.2110 -0.6318 14 8 3.7721 3.0284 -1.4741 15 6 3.4184 2.5949 0.7932 16 6 2.2926 2.3041 1.5691 17 6 2.2586 2.6617 2.9002 18 6 3.3380 3.3109 3.4759 19 9 3.2976 3.6589 4.7807 20 6 4.4657 3.6122 2.7088 21 6 5.6190 4.3140 3.3260 22 7 6.7629 4.6612 2.7195 23 7 7.4986 5.2520 3.5989 24 7 6.8686 5.2784 4.7212 25 1 7.2055 5.6645 5.5448 26 7 5.7198 4.7120 4.5786 27 6 4.5082 3.2491 1.3682 28 1 -1.0501 -0.0001 0.0003 29 1 3.0098 -0.9977 -0.2426 30 1 3.0092 0.2901 0.9861 31 1 1.6093 -2.1972 -2.2388 32 1 1.4477 1.7985 1.1250 33 1 1.3866 2.4355 3.4959 34 1 5.3800 3.4762 0.7726 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602719512.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:50 Heat of formation + Delta-G solvation = 158.477209 kcal Electronic energy + Delta-G solvation = -25106.033812 eV Core-core repulsion = 21152.756666 eV Total energy + Delta-G solvation = -3953.277146 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.82251 -44.49781 -39.68446 -37.71556 -35.35496 -34.48594 -33.66814 -32.19958 -31.43209 -30.78656 -30.20389 -26.60228 -25.21518 -24.69773 -24.54637 -22.68634 -21.98709 -19.69178 -19.17844 -18.05402 -17.50812 -17.21506 -16.93970 -16.48890 -16.26708 -15.51498 -15.16843 -14.71423 -14.25709 -14.18378 -14.06392 -13.63749 -13.43839 -13.15992 -12.59074 -12.51685 -12.38528 -12.11834 -11.94642 -11.59160 -11.40033 -11.20083 -11.08975 -11.01544 -10.85405 -10.60363 -10.38493 -9.51084 -9.39462 -8.93777 -8.82930 -8.70301 -8.34466 -8.08127 -6.41870 -3.94994 0.61783 1.08511 1.21064 2.15392 2.27173 3.10348 3.19360 3.22414 3.42023 3.55111 3.74402 3.88392 4.01370 4.06905 4.10856 4.29459 4.74643 4.86669 4.98551 5.04332 5.34269 5.35564 5.41231 5.48685 5.57019 5.88164 6.04885 6.15382 6.21404 6.26573 6.30495 6.57339 6.81495 6.84484 7.01476 7.42980 7.86107 8.08193 8.29309 8.76312 8.98882 9.19858 9.74097 10.52100 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.003801 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.813915 B = 7364.399980 C = 8392.838353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.098 4.098 3 C 0.223 3.777 4 N -0.424 5.424 5 C -0.305 4.305 6 H 0.110 0.890 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.932 3.068 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.475 3.525 14 O -0.576 6.576 15 C -0.103 4.103 16 C -0.053 4.053 17 C -0.159 4.159 18 C 0.136 3.864 19 F -0.125 7.125 20 C -0.065 4.065 21 C 0.226 3.774 22 N -0.260 5.260 23 N -0.052 5.052 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.286 5.286 27 C -0.010 4.010 28 H 0.199 0.801 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.272 0.728 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 5.022 14.246 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.100 4.100 3 C 0.100 3.900 4 N -0.140 5.140 5 C -0.433 4.433 6 H 0.128 0.872 7 C -0.174 4.174 8 N -0.503 5.503 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.264 3.736 14 O -0.461 6.461 15 C -0.106 4.106 16 C -0.072 4.072 17 C -0.178 4.178 18 C 0.114 3.886 19 F -0.103 7.103 20 C -0.070 4.070 21 C -0.054 4.054 22 N -0.133 5.133 23 N -0.047 5.047 24 N -0.077 5.077 25 H 0.328 0.672 26 N -0.137 5.137 27 C -0.032 4.032 28 H 0.216 0.784 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.472 5.486 13.822 15.271 hybrid contribution -0.453 -0.416 0.043 0.616 sum 3.019 5.070 13.865 15.069 Atomic orbital electron populations 1.24266 0.95343 1.04013 1.05062 1.22892 0.94083 0.96944 0.96076 1.18664 0.84559 0.96795 0.90010 1.43687 1.53847 1.08108 1.08390 1.19798 1.36307 1.01834 0.85319 0.87186 1.25352 0.95103 0.96879 1.00046 1.69973 1.27630 1.15015 1.37636 0.85887 0.79032 0.77994 0.81231 1.19672 1.20878 1.19726 1.17629 0.86570 0.82833 0.86593 1.90661 1.54371 1.49487 1.51585 1.20252 0.94395 1.00144 0.95845 1.21870 0.98240 0.94765 0.92356 1.20975 0.98300 1.02301 0.96249 1.17668 0.94325 0.98302 0.78351 1.91533 1.96551 1.89651 1.32603 1.17073 0.90178 1.05575 0.94129 1.23413 0.95000 1.00347 0.86636 1.76147 1.01931 1.12350 1.22896 1.78909 1.21042 1.14944 0.89827 1.47754 1.09191 1.37806 1.12946 0.67206 1.75105 1.03775 1.14872 1.19962 1.21111 0.98433 0.92330 0.91292 0.78371 0.86228 0.91791 0.91691 0.83145 0.83773 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.14 19.05 29.55 0.56 -4.58 16 2 C -0.10 -2.04 8.70 -37.12 -0.32 -2.37 16 3 C 0.22 4.68 4.76 -6.83 -0.03 4.65 16 4 N -0.42 -10.24 2.59 -119.08 -0.31 -10.54 16 5 C -0.31 -8.00 9.46 -15.00 -0.14 -8.14 16 6 H 0.11 3.03 7.26 -52.49 -0.38 2.65 16 7 C 0.03 0.74 5.17 -17.45 -0.09 0.65 16 8 N -0.86 -21.07 8.38 55.50 0.46 -20.60 16 9 Si 0.93 19.67 29.58 -169.99 -5.03 14.65 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.47 11.22 7.17 -12.42 -0.09 11.13 16 14 O -0.58 -15.63 16.64 5.28 0.09 -15.54 16 15 C -0.10 -1.94 4.89 -105.01 -0.51 -2.45 16 16 C -0.05 -0.86 7.55 -39.14 -0.30 -1.15 16 17 C -0.16 -2.17 10.00 -39.62 -0.40 -2.57 16 18 C 0.14 1.96 7.28 -38.95 -0.28 1.68 16 19 F -0.13 -1.76 15.81 2.25 0.04 -1.72 16 20 C -0.07 -1.02 5.88 -104.89 -0.62 -1.63 16 21 C 0.23 3.41 7.92 -156.31 -1.24 2.17 16 22 N -0.26 -4.01 12.23 32.15 0.39 -3.61 16 23 N -0.05 -0.66 13.47 60.35 0.81 0.16 16 24 N -0.23 -2.25 7.90 60.35 0.48 -1.77 16 25 H 0.47 2.06 8.96 -340.37 -3.05 -0.99 16 26 N -0.29 -3.70 11.08 32.17 0.36 -3.34 16 27 C -0.01 -0.18 9.38 -38.84 -0.36 -0.55 16 28 H 0.20 3.09 7.80 -54.08 -0.42 2.67 16 29 H 0.12 2.67 6.29 -51.93 -0.33 2.35 16 30 H 0.06 1.16 5.52 -51.93 -0.29 0.87 16 31 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 32 H 0.15 2.54 4.71 -52.48 -0.25 2.29 16 33 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.15 2.66 7.88 -52.49 -0.41 2.24 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -31.22 310.98 -6.53 -37.75 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.68 Total: 3.07 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.82 Total: -3.17 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 2.20 Total: -39.72 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.22 -6.53 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602719512.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.223 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds