Wall clock time and date at job start Tue Mar 31 2020 10:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40000 * 126.54370 * 2 1 4 4 C 1.36628 * 106.94248 * 179.97438 * 3 2 1 5 5 C 1.47246 * 125.80410 * 180.02562 * 4 3 2 6 6 O 1.21626 * 119.99834 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00055 * 180.27553 * 5 4 3 8 8 C 1.39046 * 120.00048 * 175.44041 * 7 5 4 9 9 C 1.39535 * 119.83474 * 215.03532 * 8 7 5 10 10 C 1.36346 * 120.16037 * 179.75506 * 9 8 7 11 11 C 1.40888 * 119.83387 * 0.54599 * 10 9 8 12 12 C 1.41111 * 120.16294 * 179.69233 * 11 10 9 13 13 H 1.07999 * 120.00411 * 214.80273 * 12 11 10 14 14 C 1.39929 * 119.99916 * 34.80223 * 12 11 10 15 15 N 1.30869 * 119.99884 * 355.56072 * 14 12 11 16 16 Si 1.86798 * 120.00075 * 175.55647 * 14 12 11 17 17 H 1.48494 * 109.47058 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46771 * 120.00048 * 16 14 12 19 19 H 1.48498 * 109.47418 * 239.99776 * 16 14 12 20 20 C 1.40897 * 119.67958 * 359.70943 * 11 10 9 21 21 C 1.36343 * 119.83069 * 0.02562 * 20 11 10 22 22 O 1.34540 * 108.39944 * 0.26209 * 4 3 2 23 23 C 1.34594 * 109.35978 * 359.56547 * 22 4 3 24 24 C 1.47110 * 125.81428 * 180.13718 * 23 22 4 25 25 O 1.21538 * 120.00242 * 180.35038 * 24 23 22 26 26 O 1.34824 * 120.00048 * 0.34816 * 24 23 22 27 27 H 1.09007 * 109.46704 * 90.02348 * 1 2 3 28 28 H 1.08996 * 109.47344 * 210.02358 * 1 2 3 29 29 H 1.09004 * 109.46689 * 330.02840 * 1 2 3 30 30 H 1.08007 * 126.52606 * 0.02562 * 3 2 1 31 31 H 0.97002 * 119.99889 * 355.43572 * 7 5 4 32 32 H 1.07997 * 119.91998 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.08065 * 180.23316 * 10 9 8 34 34 H 0.97000 * 119.99716 * 180.02562 * 15 14 12 35 35 H 1.08007 * 120.08588 * 179.97438 * 20 11 10 36 36 H 1.08001 * 119.91547 * 179.97438 * 21 20 11 37 37 H 0.96701 * 117.00140 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3406 1.1248 0.0000 4 6 3.6277 0.6664 0.0006 5 6 4.8398 1.5024 0.0013 6 8 4.7424 2.7148 0.0010 7 7 6.0573 0.9242 -0.0038 8 6 7.2000 1.7107 -0.0988 9 6 8.3088 1.2416 -0.8043 10 6 9.4310 2.0093 -0.9059 11 6 9.4734 3.2741 -0.2866 12 6 10.6336 4.0717 -0.3819 13 1 10.9282 4.6977 0.4474 14 6 11.4025 4.0514 -1.5509 15 7 11.0956 3.2293 -2.5217 16 14 12.8668 5.1980 -1.7256 17 1 13.0005 6.0209 -0.4968 18 1 14.1019 4.3971 -1.9213 19 1 12.6624 6.0869 -2.8975 20 6 8.3518 3.7387 0.4285 21 6 7.2346 2.9623 0.5170 22 8 3.5995 -0.6787 -0.0049 23 6 2.3206 -1.0982 0.0006 24 6 1.8745 -2.5000 0.0001 25 8 0.6872 -2.7599 -0.0010 26 8 2.7826 -3.4965 0.0008 27 1 -0.3633 -0.0004 -1.0278 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 2.0261 2.1580 0.0004 31 1 6.1363 -0.0405 0.0590 32 1 8.2764 0.2700 -1.2746 33 1 10.2871 1.6466 -1.4554 34 1 11.6288 3.2150 -3.3319 35 1 8.3773 4.7071 0.9061 36 1 6.3743 3.3169 1.0652 37 1 2.4415 -4.4013 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607582297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:15 Heat of formation + Delta-G solvation = -86.074857 kcal Electronic energy + Delta-G solvation = -24438.608008 eV Core-core repulsion = 20533.601092 eV Total energy + Delta-G solvation = -3905.006917 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.12907 -40.34407 -39.65855 -37.34519 -36.67713 -34.84066 -34.32046 -33.03975 -31.17289 -29.68488 -29.00874 -28.20241 -25.95303 -24.34145 -22.58816 -21.62743 -21.14366 -20.68249 -19.56072 -18.78657 -18.00169 -17.54220 -17.30739 -17.05211 -16.40867 -15.66368 -15.24464 -14.74215 -14.53274 -14.18405 -13.95107 -13.88797 -13.45212 -13.42457 -13.07803 -13.03401 -12.75320 -12.41235 -12.22609 -12.03546 -11.79487 -11.47050 -11.24589 -11.12409 -11.07566 -10.83193 -10.26816 -10.05040 -9.70518 -9.57068 -9.35547 -9.08919 -9.01173 -7.63962 -6.97802 -6.69860 -4.42153 0.22925 1.52899 1.93456 2.45027 2.56131 2.75399 3.02183 3.03478 3.07167 3.12045 3.32389 3.48280 3.92680 4.31248 4.55523 4.62889 4.72040 5.03721 5.15314 5.35837 5.36848 5.56540 5.58696 5.72232 5.88647 6.06294 6.11759 6.32501 6.36645 6.59096 6.81553 6.97319 7.08519 7.19838 7.39364 7.54851 7.60488 7.70724 7.97498 8.09733 8.22029 8.40105 8.57549 8.84476 8.89980 10.20835 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.032207 B = 0.002450 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.175937 B =11427.438409 C =11992.491863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.077 4.077 3 C -0.150 4.150 4 C -0.001 4.001 5 C 0.577 3.423 6 O -0.500 6.500 7 N -0.627 5.627 8 C -0.010 4.010 9 C -0.113 4.113 10 C -0.142 4.142 11 C 0.103 3.897 12 C -0.457 4.457 13 H 0.078 0.922 14 C 0.069 3.931 15 N -0.807 5.807 16 Si 0.917 3.083 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.206 4.206 21 C -0.081 4.081 22 O -0.140 6.140 23 C -0.058 4.058 24 C 0.574 3.426 25 O -0.491 6.491 26 O -0.501 6.501 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.173 0.827 31 H 0.403 0.597 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.279 0.721 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 -10.373 3.105 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 C -0.171 4.171 4 C -0.056 4.056 5 C 0.361 3.639 6 O -0.377 6.377 7 N -0.268 5.268 8 C -0.102 4.102 9 C -0.133 4.133 10 C -0.162 4.162 11 C 0.101 3.899 12 C -0.487 4.487 13 H 0.096 0.904 14 C -0.147 4.147 15 N -0.434 5.434 16 Si 0.742 3.258 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.226 4.226 21 C -0.101 4.101 22 O -0.035 6.035 23 C -0.109 4.109 24 C 0.418 3.582 25 O -0.381 6.381 26 O -0.313 6.313 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.191 0.809 31 H 0.237 0.763 32 H 0.112 0.888 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -14.536 -9.459 2.854 17.576 hybrid contribution 0.374 -0.547 -0.318 0.735 sum -14.162 -10.006 2.536 17.525 Atomic orbital electron populations 1.20518 0.87341 1.04122 1.03456 1.20636 0.97951 0.90295 0.98997 1.21850 0.90043 1.00871 1.04310 1.22974 0.97197 0.79826 1.05629 1.16685 0.81097 0.86420 0.79661 1.90883 1.84941 1.11734 1.50140 1.42858 1.04369 1.10274 1.69333 1.17228 0.87109 0.95599 1.10226 1.20323 0.94110 0.99409 0.99426 1.21205 0.97736 0.93882 1.03405 1.17770 0.91829 0.90872 0.89461 1.19577 1.06632 1.22143 1.00357 0.90369 1.25926 0.97885 0.95492 0.95393 1.69764 1.36461 1.31641 1.05553 0.86117 0.80249 0.80210 0.79261 1.18513 1.19930 1.19913 1.20807 0.93651 0.99556 1.08601 1.20398 0.97760 0.93501 0.98408 1.84156 1.27562 1.21750 1.70073 1.20600 0.82168 0.91615 1.16550 1.18900 0.83228 0.83427 0.72607 1.90956 1.17032 1.83265 1.46848 1.84668 1.41681 1.19637 1.85345 0.90140 0.89485 0.90544 0.80939 0.76259 0.88829 0.84868 0.91036 0.88344 0.87362 0.72057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.80 36.01 0.35 -0.49 16 2 C -0.08 -0.86 6.18 -104.53 -0.65 -1.51 16 3 C -0.15 -1.87 10.54 -39.50 -0.42 -2.29 16 4 C 0.00 -0.02 7.13 -36.50 -0.26 -0.28 16 5 C 0.58 10.16 7.64 -12.60 -0.10 10.06 16 6 O -0.50 -10.33 14.28 5.25 0.08 -10.25 16 7 N -0.63 -11.11 5.29 -10.77 -0.06 -11.17 16 8 C -0.01 -0.21 6.30 -83.62 -0.53 -0.73 16 9 C -0.11 -2.51 9.90 -39.78 -0.39 -2.90 16 10 C -0.14 -3.56 8.61 -39.26 -0.34 -3.90 16 11 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 12 C -0.46 -11.86 9.02 -37.86 -0.34 -12.20 16 13 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 14 C 0.07 1.70 5.42 -17.33 -0.09 1.60 16 15 N -0.81 -20.50 10.60 55.55 0.59 -19.91 16 16 Si 0.92 18.55 29.56 -169.99 -5.03 13.53 16 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 20 C -0.21 -5.06 9.74 -39.26 -0.38 -5.44 16 21 C -0.08 -1.87 8.61 -39.78 -0.34 -2.22 16 22 O -0.14 -1.87 10.42 4.04 0.04 -1.82 16 23 C -0.06 -0.70 7.19 -36.55 -0.26 -0.96 16 24 C 0.57 6.02 8.32 34.33 0.29 6.30 16 25 O -0.49 -5.63 15.50 -19.29 -0.30 -5.92 16 26 O -0.50 -4.02 13.44 -42.26 -0.57 -4.59 16 27 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.09 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.17 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.40 5.91 8.58 -40.82 -0.35 5.56 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.13 3.44 6.13 -52.48 -0.32 3.12 16 34 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 35 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 36 H 0.11 2.44 6.22 -52.49 -0.33 2.11 16 37 H 0.42 1.09 9.11 45.56 0.42 1.51 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -30.61 333.45 -6.85 -37.46 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -2.58 Total: 10.50 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -4.06 Total: -12.85 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.53 Total: -31.07 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.75 Total: -22.59 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.61 -6.85 -37.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607582297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.612 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds