Wall clock time and date at job start Tue Mar 31 2020 10:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33493 * 125.81751 * 2 1 4 4 C 1.34904 * 109.87858 * 180.02562 * 3 2 1 5 5 C 1.46597 * 125.65312 * 179.97438 * 4 3 2 6 6 O 1.21614 * 119.99938 * 180.02562 * 5 4 3 7 7 O 1.34883 * 120.00398 * 0.02562 * 5 4 3 8 8 C 1.36152 * 108.68564 * 0.02562 * 4 3 2 9 9 C 1.37858 * 125.82635 * 180.02562 * 2 1 3 10 10 C 1.47466 * 126.76788 * 0.02562 * 9 2 1 11 11 O 1.21605 * 120.00502 * 359.97438 * 10 9 2 12 12 N 1.34779 * 120.00095 * 179.97438 * 10 9 2 13 13 C 1.39871 * 120.00149 * 175.09552 * 12 10 9 14 14 C 1.39301 * 119.94978 * 326.46091 * 13 12 10 15 15 C 1.38488 * 120.42563 * 179.76247 * 14 13 12 16 16 C 1.37684 * 120.32663 * 0.51555 * 15 14 13 17 17 C 1.40749 * 119.88202 * 359.74710 * 16 15 14 18 18 C 1.41411 * 120.20221 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99599 * 151.36795 * 18 17 16 20 20 C 1.39931 * 120.00322 * 331.35949 * 18 17 16 21 21 N 1.30833 * 120.00003 * 166.75281 * 20 18 17 22 22 Si 1.86793 * 119.99903 * 346.75463 * 20 18 17 23 23 H 1.48502 * 109.47177 * 95.30307 * 22 20 18 24 24 H 1.48504 * 109.47294 * 215.30120 * 22 20 18 25 25 H 1.48496 * 109.47693 * 335.29899 * 22 20 18 26 26 C 1.38260 * 119.95058 * 146.74190 * 13 12 10 27 27 H 1.08995 * 109.47115 * 269.97127 * 1 2 3 28 28 H 1.08995 * 109.47364 * 29.98224 * 1 2 3 29 29 H 1.09003 * 109.46522 * 149.97789 * 1 2 3 30 30 H 0.96696 * 117.00173 * 179.97438 * 7 5 4 31 31 H 1.07998 * 126.68945 * 180.26170 * 8 4 3 32 32 H 0.97003 * 119.99459 * 355.09799 * 12 10 9 33 33 H 1.08000 * 119.78766 * 0.02562 * 14 13 12 34 34 H 1.08000 * 119.83676 * 180.24225 * 15 14 13 35 35 H 1.07996 * 120.06191 * 179.76376 * 16 15 14 36 36 H 0.96992 * 120.00081 * 180.02562 * 21 20 18 37 37 H 1.08007 * 120.15648 * 359.95009 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2883 1.0825 0.0000 4 6 3.5855 0.7120 -0.0006 5 6 4.7342 1.6228 -0.0013 6 8 5.8650 1.1752 -0.0022 7 8 4.5371 2.9571 -0.0009 8 6 3.6507 -0.6479 -0.0015 9 6 2.3140 -1.1177 -0.0005 10 6 1.8729 -2.5249 -0.0017 11 8 0.6861 -2.7901 -0.0018 12 7 2.7850 -3.5171 -0.0026 13 6 2.3699 -4.8488 0.0999 14 6 1.2469 -5.1708 0.8586 15 6 0.8243 -6.4855 0.9628 16 6 1.5164 -7.4908 0.3256 17 6 2.6561 -7.1812 -0.4400 18 6 3.3718 -8.2084 -1.0978 19 1 3.9144 -7.9919 -2.0062 20 6 3.3770 -9.5050 -0.5717 21 7 3.8104 -10.5036 -1.2973 22 14 2.7650 -9.8101 1.1666 23 1 1.3386 -10.2210 1.1243 24 1 3.5721 -10.8874 1.7936 25 1 2.8978 -8.5644 1.9640 26 6 3.0782 -5.8444 -0.5473 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3632 -0.8898 -0.5142 30 1 5.3252 3.5173 -0.0010 31 1 4.5466 -1.2510 0.0018 32 1 3.7294 -3.3075 -0.0742 33 1 0.6998 -4.3896 1.3654 34 1 -0.0499 -6.7240 1.5504 35 1 1.1853 -8.5151 0.4129 36 1 3.8137 -11.4024 -0.9328 37 1 3.9512 -5.5962 -1.1327 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608033430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:01 Heat of formation + Delta-G solvation = -110.434242 kcal Electronic energy + Delta-G solvation = -24626.492656 eV Core-core repulsion = 20720.429437 eV Total energy + Delta-G solvation = -3906.063219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.12529 -41.27098 -41.01975 -39.18534 -37.31563 -36.21226 -35.17911 -34.52470 -33.21795 -32.18077 -30.67580 -28.91468 -27.06924 -25.66127 -24.27858 -23.07961 -22.88639 -21.95048 -21.09608 -19.84862 -19.47869 -18.77847 -18.01348 -17.85155 -17.46756 -17.11290 -16.60797 -16.47883 -16.35571 -15.94111 -15.34351 -15.27561 -14.70104 -14.52436 -14.50316 -14.29645 -14.20414 -13.93736 -13.83152 -13.48108 -12.99087 -12.88692 -12.77125 -12.60106 -12.46017 -12.21282 -11.93151 -11.55184 -11.38353 -11.21579 -11.18874 -10.69453 -9.90231 -9.56125 -8.88318 -8.87005 -6.53019 -0.42602 0.14588 0.78600 0.80389 1.09149 1.29184 1.43639 1.51931 1.57774 1.89781 2.12448 2.15002 2.15722 2.64930 3.34873 3.40365 3.51722 3.67061 4.09227 4.17974 4.31053 4.43025 4.50776 4.54181 4.59299 4.61442 4.79391 4.86451 4.95430 4.99292 5.13321 5.28827 5.33278 5.54666 5.57811 5.69251 5.80344 5.92650 6.18742 6.33631 6.52809 6.69614 6.77766 6.81054 7.09783 8.20404 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.002859 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.184204 B = 9790.675492 C =10660.437966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.134 3.866 3 O -0.139 6.139 4 C -0.087 4.087 5 C 0.583 3.417 6 O -0.517 6.517 7 O -0.497 6.497 8 C -0.064 4.064 9 C -0.267 4.267 10 C 0.588 3.412 11 O -0.543 6.543 12 N -0.655 5.655 13 C 0.175 3.825 14 C -0.225 4.225 15 C -0.068 4.068 16 C -0.257 4.257 17 C 0.088 3.912 18 C -0.479 4.479 19 H 0.058 0.942 20 C 0.045 3.955 21 N -0.854 5.854 22 Si 0.969 3.031 23 H -0.260 1.260 24 H -0.283 1.283 25 H -0.245 1.245 26 C -0.238 4.238 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.442 0.558 31 H 0.186 0.814 32 H 0.418 0.582 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.293 0.707 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 24.411 5.448 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 O -0.033 6.033 4 C -0.136 4.136 5 C 0.428 3.572 6 O -0.408 6.408 7 O -0.312 6.312 8 C -0.084 4.084 9 C -0.272 4.272 10 C 0.378 3.622 11 O -0.421 6.421 12 N -0.300 5.300 13 C 0.082 3.918 14 C -0.245 4.245 15 C -0.087 4.087 16 C -0.276 4.276 17 C 0.085 3.915 18 C -0.508 4.508 19 H 0.076 0.924 20 C -0.169 4.169 21 N -0.480 5.480 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.210 1.210 25 H -0.169 1.169 26 C -0.260 4.260 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.120 0.880 30 H 0.306 0.694 31 H 0.204 0.796 32 H 0.256 0.744 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.210 24.003 5.360 24.803 hybrid contribution 1.280 -0.450 0.046 1.357 sum -1.930 23.553 5.406 24.243 Atomic orbital electron populations 1.20931 0.80773 1.06456 1.06292 1.24078 0.95459 0.81991 0.90802 1.84024 1.15661 1.34041 1.69541 1.20471 0.81484 0.92587 1.19014 1.18604 0.85126 0.81459 0.72014 1.91035 1.23257 1.78499 1.48052 1.84606 1.45244 1.16639 1.84736 1.22216 0.98105 0.92765 0.95323 1.20166 0.93878 0.93386 1.19749 1.17393 0.85324 0.83968 0.75530 1.90765 1.17032 1.84239 1.50111 1.43205 1.10948 1.03803 1.72036 1.17478 0.95903 0.82407 0.96001 1.20633 1.00915 0.96252 1.06737 1.20819 0.98353 0.92241 0.97295 1.21112 0.99486 0.98308 1.08724 1.17632 0.90866 0.92638 0.90389 1.19451 1.28760 0.92950 1.09674 0.92412 1.26842 0.92195 0.94687 1.03188 1.69690 1.37682 1.01600 1.39052 0.85449 0.78283 0.78723 0.78210 1.18606 1.21011 1.16902 1.20831 1.04175 0.92462 1.08511 0.86812 0.86942 0.87977 0.69400 0.79647 0.74418 0.86140 0.85268 0.88382 0.89611 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.89 71.24 0.70 -0.57 16 2 C 0.13 2.62 7.41 25.60 0.19 2.81 16 3 O -0.14 -2.65 10.62 -0.54 -0.01 -2.65 16 4 C -0.09 -1.71 7.14 23.97 0.17 -1.54 16 5 C 0.58 10.42 8.31 70.00 0.58 11.00 16 6 O -0.52 -11.68 17.64 19.46 0.34 -11.34 16 7 O -0.50 -5.68 13.44 -56.43 -0.76 -6.44 16 8 C -0.06 -1.31 10.05 22.64 0.23 -1.08 16 9 C -0.27 -6.25 6.16 -20.08 -0.12 -6.37 16 10 C 0.59 17.78 7.55 86.67 0.65 18.44 16 11 O -0.54 -19.08 12.50 -4.05 -0.05 -19.13 16 12 N -0.66 -20.68 5.33 -306.55 -1.63 -22.31 16 13 C 0.18 7.09 6.26 38.12 0.24 7.33 16 14 C -0.22 -9.23 8.66 22.59 0.20 -9.03 16 15 C -0.07 -2.88 10.02 22.20 0.22 -2.66 16 16 C -0.26 -12.20 6.92 22.75 0.16 -12.05 16 17 C 0.09 4.47 5.19 -21.31 -0.11 4.36 16 18 C -0.48 -26.76 9.61 23.46 0.23 -26.54 16 19 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 20 C 0.04 2.41 5.47 85.25 0.47 2.87 16 21 N -0.85 -47.03 13.93 21.82 0.30 -46.73 16 22 Si 0.97 42.86 24.37 68.60 1.67 44.53 16 23 H -0.26 -10.92 6.77 99.48 0.67 -10.25 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.25 -10.95 6.48 99.48 0.64 -10.30 16 26 C -0.24 -10.79 9.70 22.85 0.22 -10.57 16 27 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 1.91 6.48 -2.39 -0.02 1.90 16 30 H 0.44 0.43 9.11 -74.06 -0.67 -0.24 16 31 H 0.19 3.13 7.60 -2.91 -0.02 3.11 16 32 H 0.42 10.52 7.86 -92.71 -0.73 9.79 16 33 H 0.12 4.70 6.40 -2.91 -0.02 4.69 16 34 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.10 4.62 4.20 -2.91 -0.01 4.60 16 36 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -70.29 326.90 3.57 -66.73 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.33 Total: 20.94 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.02 Total: -23.59 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.33 Total: -69.04 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.47 Total: -39.57 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.67 Total: 44.53 kcal Total: -70.29 3.57 -66.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608033430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.708 kcal (2) G-P(sol) polarization free energy of solvation -70.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds