Wall clock time and date at job start Tue Mar 31 2020 10:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46510 * 109.47083 * 162.15814 * 3 2 1 5 5 C 1.36938 * 119.99713 * 86.21386 * 4 3 2 6 6 H 1.07999 * 119.99286 * 160.88311 * 5 4 3 7 7 C 1.38810 * 120.00420 * 340.88051 * 5 4 3 8 8 N 1.31617 * 120.00042 * 7.57633 * 7 5 4 9 9 Si 1.86802 * 119.99931 * 187.58192 * 7 5 4 10 10 H 1.48502 * 109.47044 * 59.99845 * 9 7 5 11 11 H 1.48502 * 109.46808 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47098 * 299.99938 * 9 7 5 13 13 S 1.65594 * 119.99803 * 266.21967 * 4 3 2 14 14 O 1.42101 * 104.27772 * 206.06833 * 13 4 3 15 15 O 1.42100 * 104.27879 * 333.92594 * 13 4 3 16 16 C 1.81402 * 104.45102 * 89.99476 * 13 4 3 17 17 C 1.52996 * 109.47212 * 175.96275 * 16 13 4 18 18 C 1.50704 * 110.02000 * 303.94322 * 17 16 13 19 19 O 1.20821 * 120.00396 * 124.98504 * 18 17 16 20 20 O 1.34233 * 119.99616 * 304.98712 * 18 17 16 21 21 C 1.54268 * 110.03688 * 182.54753 * 17 16 13 22 22 C 1.54957 * 104.16208 * 217.13824 * 21 17 16 23 23 C 1.54891 * 102.77925 * 37.88929 * 22 21 17 24 24 C 1.53874 * 110.03058 * 65.33267 * 17 16 13 25 25 H 4.40644 * 5.51343 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.48041 * 42.15865 * 3 2 1 27 27 H 1.08999 * 109.47129 * 282.15028 * 3 2 1 28 28 H 0.96995 * 120.00014 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47231 * 295.96957 * 16 13 4 30 30 H 1.09005 * 109.46632 * 55.96811 * 16 13 4 31 31 H 0.96698 * 116.99647 * 180.02562 * 20 18 17 32 32 H 1.09000 * 110.48008 * 335.78991 * 21 17 16 33 33 H 1.09001 * 110.48276 * 98.42659 * 21 17 16 34 34 H 1.08996 * 110.72408 * 279.57266 * 22 21 17 35 35 H 1.09003 * 110.76453 * 156.22035 * 22 21 17 36 36 H 1.09001 * 110.48877 * 203.40260 * 23 22 21 37 37 H 1.08999 * 110.49058 * 80.75609 * 23 22 21 38 38 H 1.09007 * 110.03328 * 238.57140 * 24 17 16 39 39 H 1.09000 * 110.03234 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3158 -0.4232 5 6 3.2877 2.3177 0.4975 6 1 3.9190 3.1647 0.2731 7 6 2.6323 2.2446 1.7189 8 7 1.9848 1.1488 2.0539 9 14 2.6693 3.7017 2.8873 10 1 2.0617 4.8834 2.2242 11 1 1.8993 3.3724 4.1137 12 1 4.0758 4.0078 3.2525 13 16 3.4987 1.5905 -2.0149 14 8 4.4635 2.6332 -1.9783 15 8 3.8274 0.3059 -2.5259 16 6 1.9457 2.1854 -2.7393 17 6 2.1801 2.5731 -4.2006 18 6 3.2842 3.5948 -4.2926 19 8 4.2411 3.3881 -5.0006 20 8 3.2043 4.7344 -3.5879 21 6 0.8824 3.1410 -4.8115 22 6 0.8837 2.6085 -6.2667 23 6 1.4575 1.1786 -6.1078 24 6 2.5460 1.3261 -5.0246 25 1 -1.0502 -0.0005 0.0000 26 1 3.0098 -0.7609 -0.6897 27 1 3.0094 -0.2155 1.0046 28 1 1.5266 1.0979 2.9072 29 1 1.1954 1.3964 -2.6885 30 1 1.5958 3.0558 -2.1841 31 1 3.9364 5.3595 -3.6796 32 1 0.0119 2.7700 -4.2704 33 1 0.9020 4.2308 -4.8033 34 1 1.5306 3.2162 -6.8993 35 1 -0.1296 2.5757 -6.6671 36 1 1.8961 0.8371 -7.0454 37 1 0.6802 0.4902 -5.7761 38 1 3.5218 1.4603 -5.4916 39 1 2.5570 0.4448 -4.3833 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609152757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:01 Heat of formation + Delta-G solvation = -95.920388 kcal Electronic energy + Delta-G solvation = -26181.750242 eV Core-core repulsion = 22411.760342 eV Total energy + Delta-G solvation = -3769.989899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.50486 -37.62624 -36.40743 -35.83978 -35.71748 -34.63275 -32.03684 -31.51404 -31.21942 -28.71069 -26.65952 -25.51292 -23.80112 -23.25664 -20.84964 -19.23485 -18.62278 -17.95375 -17.52188 -16.97433 -16.65343 -16.53382 -15.66030 -15.07390 -14.87186 -14.69555 -14.46097 -14.21619 -13.54765 -13.36636 -13.16004 -12.96202 -12.51735 -12.27293 -11.72116 -11.55337 -11.46036 -11.36976 -11.20840 -11.15489 -11.06307 -11.01943 -10.90641 -10.81617 -10.69757 -10.49877 -10.44555 -10.32665 -10.02400 -9.86889 -9.51865 -9.24973 -8.85760 -8.31032 -6.59466 -4.11083 1.41296 2.47238 3.08792 3.10801 3.13227 3.28119 3.58027 3.93952 4.07406 4.30000 4.47366 4.58979 4.71872 4.81474 5.08567 5.17499 5.35378 5.43460 5.49919 5.53692 5.56845 5.64840 5.70934 5.87192 5.90977 6.06825 6.12157 6.18321 6.32558 6.37293 6.40877 6.51597 6.78451 6.85271 6.98007 7.13898 7.33699 8.17024 8.19920 8.51620 8.79014 8.96615 10.27694 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.005906 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.842934 B = 4739.571526 C = 5246.871389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.103 4.103 3 C 0.235 3.765 4 N -0.802 5.802 5 C -0.248 4.248 6 H 0.122 0.878 7 C 0.033 3.967 8 N -0.825 5.825 9 Si 0.925 3.075 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.267 1.267 13 S 2.473 3.527 14 O -0.974 6.974 15 O -0.991 6.991 16 C -0.654 4.654 17 C -0.032 4.032 18 C 0.482 3.518 19 O -0.511 6.511 20 O -0.499 6.499 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.117 4.117 24 C -0.146 4.146 25 H 0.197 0.803 26 H 0.076 0.924 27 H 0.134 0.866 28 H 0.278 0.722 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.409 0.591 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 2.152 -7.029 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.106 4.106 3 C 0.110 3.890 4 N -0.625 5.625 5 C -0.394 4.394 6 H 0.139 0.861 7 C -0.178 4.178 8 N -0.466 5.466 9 Si 0.750 3.250 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.192 1.192 13 S 2.571 3.429 14 O -0.964 6.964 15 O -0.980 6.980 16 C -0.772 4.772 17 C -0.034 4.034 18 C 0.324 3.676 19 O -0.399 6.399 20 O -0.310 6.310 21 C -0.143 4.143 22 C -0.167 4.167 23 C -0.154 4.154 24 C -0.183 4.183 25 H 0.215 0.785 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.267 0.733 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.345 1.577 -7.743 9.018 hybrid contribution -0.765 1.434 0.707 1.772 sum -5.110 3.011 -7.037 9.203 Atomic orbital electron populations 1.24267 0.95361 1.03479 1.07062 1.23601 0.94697 0.97314 0.94975 1.18526 0.83567 0.83636 1.03299 1.54157 1.73335 1.15016 1.19944 1.19989 1.22472 1.03207 0.93709 0.86098 1.25693 0.94836 0.97959 0.99348 1.70015 1.29206 1.24655 1.22695 0.85988 0.79140 0.80926 0.78900 1.19295 1.20511 1.19195 1.13846 0.80481 0.74111 0.74469 1.93374 1.58947 1.58598 1.85456 1.93349 1.84545 1.40065 1.80072 1.31372 1.31481 1.12441 1.01904 1.20711 0.93487 0.92883 0.96346 1.23282 0.86662 0.81896 0.75752 1.90641 1.33191 1.77276 1.38780 1.84476 1.51165 1.29910 1.65423 1.22489 0.95548 1.00706 0.95565 1.22596 1.01045 0.96718 0.96336 1.22295 0.97813 0.96835 0.98474 1.22734 1.01231 0.96242 0.98129 0.78547 0.90572 0.84879 0.91083 0.85993 0.85650 0.73283 0.89635 0.90808 0.91503 0.91013 0.91185 0.91144 0.88938 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.53 19.25 29.55 0.57 -4.96 16 2 C -0.10 -2.22 11.21 -37.12 -0.42 -2.64 16 3 C 0.24 5.25 5.43 -6.83 -0.04 5.21 16 4 N -0.80 -18.92 2.81 -62.77 -0.18 -19.10 16 5 C -0.25 -5.99 9.46 -15.06 -0.14 -6.14 16 6 H 0.12 2.93 7.04 -52.49 -0.37 2.57 16 7 C 0.03 0.75 5.39 -17.43 -0.09 0.66 16 8 N -0.83 -19.10 8.17 55.49 0.45 -18.64 16 9 Si 0.93 18.19 29.56 -169.99 -5.02 13.16 16 10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 12 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 13 S 2.47 57.12 4.79 -107.50 -0.51 56.61 16 14 O -0.97 -24.72 14.93 -59.40 -0.89 -25.61 16 15 O -0.99 -24.13 14.68 -57.54 -0.84 -24.97 16 16 C -0.65 -12.56 4.75 37.16 0.18 -12.39 16 17 C -0.03 -0.56 0.63 -154.54 -0.10 -0.66 16 18 C 0.48 9.21 4.73 36.01 0.17 9.38 16 19 O -0.51 -10.77 15.97 -18.75 -0.30 -11.07 16 20 O -0.50 -8.41 12.98 -40.76 -0.53 -8.94 16 21 C -0.10 -1.46 5.90 -25.03 -0.15 -1.61 16 22 C -0.13 -1.57 6.91 -24.70 -0.17 -1.74 16 23 C -0.12 -1.53 6.83 -25.07 -0.17 -1.70 16 24 C -0.15 -2.51 5.48 -25.61 -0.14 -2.65 16 25 H 0.20 3.11 7.80 -54.08 -0.42 2.69 16 26 H 0.08 1.61 6.84 -51.93 -0.35 1.26 16 27 H 0.13 3.04 6.28 -51.93 -0.33 2.72 16 28 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 29 H 0.12 2.19 8.14 -51.93 -0.42 1.77 16 30 H 0.13 2.38 8.14 -51.92 -0.42 1.96 16 31 H 0.41 5.14 9.10 45.56 0.41 5.55 16 32 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 33 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.71 6.40 -51.93 -0.33 1.37 16 39 H 0.10 1.76 5.96 -51.93 -0.31 1.45 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -30.15 333.39 -7.48 -37.63 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -4.18 Total: 15.13 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -0.50 Total: -19.23 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.28 Total: -37.74 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -2.56 Total: -70.59 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.16 kcal Atomic # 16 Polarization: 57.12 SS G_CDS: -0.51 Total: 56.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.15 -7.48 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609152757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.287 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds