Wall clock time and date at job start Tue Mar 31 2020 10:50:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47196 * 179.97438 * 2 1
4 4 N 1.46510 * 109.47083 * 162.15814 * 3 2 1
5 5 C 1.36938 * 119.99713 * 86.21386 * 4 3 2
6 6 H 1.07999 * 119.99286 * 160.88311 * 5 4 3
7 7 C 1.38810 * 120.00420 * 340.88051 * 5 4 3
8 8 N 1.31617 * 120.00042 * 7.57633 * 7 5 4
9 9 Si 1.86802 * 119.99931 * 187.58192 * 7 5 4
10 10 H 1.48502 * 109.47044 * 59.99845 * 9 7 5
11 11 H 1.48502 * 109.46808 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.47098 * 299.99938 * 9 7 5
13 13 S 1.65594 * 119.99803 * 266.21967 * 4 3 2
14 14 O 1.42101 * 104.27772 * 206.06833 * 13 4 3
15 15 O 1.42100 * 104.27879 * 333.92594 * 13 4 3
16 16 C 1.81402 * 104.45102 * 89.99476 * 13 4 3
17 17 C 1.52996 * 109.47212 * 175.96275 * 16 13 4
18 18 C 1.50704 * 110.02000 * 303.94322 * 17 16 13
19 19 O 1.20821 * 120.00396 * 124.98504 * 18 17 16
20 20 O 1.34233 * 119.99616 * 304.98712 * 18 17 16
21 21 C 1.54268 * 110.03688 * 182.54753 * 17 16 13
22 22 C 1.54957 * 104.16208 * 217.13824 * 21 17 16
23 23 C 1.54891 * 102.77925 * 37.88929 * 22 21 17
24 24 C 1.53874 * 110.03058 * 65.33267 * 17 16 13
25 25 H 4.40644 * 5.51343 * 179.97438 * 4 1 2
26 26 H 1.08998 * 109.48041 * 42.15865 * 3 2 1
27 27 H 1.08999 * 109.47129 * 282.15028 * 3 2 1
28 28 H 0.96995 * 120.00014 * 180.02562 * 8 7 5
29 29 H 1.08997 * 109.47231 * 295.96957 * 16 13 4
30 30 H 1.09005 * 109.46632 * 55.96811 * 16 13 4
31 31 H 0.96698 * 116.99647 * 180.02562 * 20 18 17
32 32 H 1.09000 * 110.48008 * 335.78991 * 21 17 16
33 33 H 1.09001 * 110.48276 * 98.42659 * 21 17 16
34 34 H 1.08996 * 110.72408 * 279.57266 * 22 21 17
35 35 H 1.09003 * 110.76453 * 156.22035 * 22 21 17
36 36 H 1.09001 * 110.48877 * 203.40260 * 23 22 21
37 37 H 1.08999 * 110.49058 * 80.75609 * 23 22 21
38 38 H 1.09007 * 110.03328 * 238.57140 * 24 17 16
39 39 H 1.09000 * 110.03234 * 359.97438 * 24 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3158 -0.4232
5 6 3.2877 2.3177 0.4975
6 1 3.9190 3.1647 0.2731
7 6 2.6323 2.2446 1.7189
8 7 1.9848 1.1488 2.0539
9 14 2.6693 3.7017 2.8873
10 1 2.0617 4.8834 2.2242
11 1 1.8993 3.3724 4.1137
12 1 4.0758 4.0078 3.2525
13 16 3.4987 1.5905 -2.0149
14 8 4.4635 2.6332 -1.9783
15 8 3.8274 0.3059 -2.5259
16 6 1.9457 2.1854 -2.7393
17 6 2.1801 2.5731 -4.2006
18 6 3.2842 3.5948 -4.2926
19 8 4.2411 3.3881 -5.0006
20 8 3.2043 4.7344 -3.5879
21 6 0.8824 3.1410 -4.8115
22 6 0.8837 2.6085 -6.2667
23 6 1.4575 1.1786 -6.1078
24 6 2.5460 1.3261 -5.0246
25 1 -1.0502 -0.0005 0.0000
26 1 3.0098 -0.7609 -0.6897
27 1 3.0094 -0.2155 1.0046
28 1 1.5266 1.0979 2.9072
29 1 1.1954 1.3964 -2.6885
30 1 1.5958 3.0558 -2.1841
31 1 3.9364 5.3595 -3.6796
32 1 0.0119 2.7700 -4.2704
33 1 0.9020 4.2308 -4.8033
34 1 1.5306 3.2162 -6.8993
35 1 -0.1296 2.5757 -6.6671
36 1 1.8961 0.8371 -7.0454
37 1 0.6802 0.4902 -5.7761
38 1 3.5218 1.4603 -5.4916
39 1 2.5570 0.4448 -4.3833
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001609152757.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:50:01
Heat of formation + Delta-G solvation = -95.920388 kcal
Electronic energy + Delta-G solvation = -26181.750242 eV
Core-core repulsion = 22411.760342 eV
Total energy + Delta-G solvation = -3769.989899 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.50486 -37.62624 -36.40743 -35.83978 -35.71748 -34.63275 -32.03684 -31.51404
-31.21942 -28.71069 -26.65952 -25.51292 -23.80112 -23.25664 -20.84964 -19.23485
-18.62278 -17.95375 -17.52188 -16.97433 -16.65343 -16.53382 -15.66030 -15.07390
-14.87186 -14.69555 -14.46097 -14.21619 -13.54765 -13.36636 -13.16004 -12.96202
-12.51735 -12.27293 -11.72116 -11.55337 -11.46036 -11.36976 -11.20840 -11.15489
-11.06307 -11.01943 -10.90641 -10.81617 -10.69757 -10.49877 -10.44555 -10.32665
-10.02400 -9.86889 -9.51865 -9.24973 -8.85760 -8.31032 -6.59466 -4.11083
1.41296 2.47238 3.08792 3.10801 3.13227 3.28119 3.58027 3.93952
4.07406 4.30000 4.47366 4.58979 4.71872 4.81474 5.08567 5.17499
5.35378 5.43460 5.49919 5.53692 5.56845 5.64840 5.70934 5.87192
5.90977 6.06825 6.12157 6.18321 6.32558 6.37293 6.40877 6.51597
6.78451 6.85271 6.98007 7.13898 7.33699 8.17024 8.19920 8.51620
8.79014 8.96615 10.27694
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.017040 B = 0.005906 C = 0.005335
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1642.842934 B = 4739.571526 C = 5246.871389
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.282 4.282
2 C -0.103 4.103
3 C 0.235 3.765
4 N -0.802 5.802
5 C -0.248 4.248
6 H 0.122 0.878
7 C 0.033 3.967
8 N -0.825 5.825
9 Si 0.925 3.075
10 H -0.268 1.268
11 H -0.280 1.280
12 H -0.267 1.267
13 S 2.473 3.527
14 O -0.974 6.974
15 O -0.991 6.991
16 C -0.654 4.654
17 C -0.032 4.032
18 C 0.482 3.518
19 O -0.511 6.511
20 O -0.499 6.499
21 C -0.105 4.105
22 C -0.129 4.129
23 C -0.117 4.117
24 C -0.146 4.146
25 H 0.197 0.803
26 H 0.076 0.924
27 H 0.134 0.866
28 H 0.278 0.722
29 H 0.122 0.878
30 H 0.125 0.875
31 H 0.409 0.591
32 H 0.085 0.915
33 H 0.073 0.927
34 H 0.066 0.934
35 H 0.071 0.929
36 H 0.069 0.931
37 H 0.070 0.930
38 H 0.092 0.908
39 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.041 2.152 -7.029 8.913
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.302 4.302
2 C -0.106 4.106
3 C 0.110 3.890
4 N -0.625 5.625
5 C -0.394 4.394
6 H 0.139 0.861
7 C -0.178 4.178
8 N -0.466 5.466
9 Si 0.750 3.250
10 H -0.193 1.193
11 H -0.205 1.205
12 H -0.192 1.192
13 S 2.571 3.429
14 O -0.964 6.964
15 O -0.980 6.980
16 C -0.772 4.772
17 C -0.034 4.034
18 C 0.324 3.676
19 O -0.399 6.399
20 O -0.310 6.310
21 C -0.143 4.143
22 C -0.167 4.167
23 C -0.154 4.154
24 C -0.183 4.183
25 H 0.215 0.785
26 H 0.094 0.906
27 H 0.151 0.849
28 H 0.089 0.911
29 H 0.140 0.860
30 H 0.144 0.856
31 H 0.267 0.733
32 H 0.104 0.896
33 H 0.092 0.908
34 H 0.085 0.915
35 H 0.090 0.910
36 H 0.088 0.912
37 H 0.089 0.911
38 H 0.111 0.889
39 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -4.345 1.577 -7.743 9.018
hybrid contribution -0.765 1.434 0.707 1.772
sum -5.110 3.011 -7.037 9.203
Atomic orbital electron populations
1.24267 0.95361 1.03479 1.07062 1.23601 0.94697 0.97314 0.94975
1.18526 0.83567 0.83636 1.03299 1.54157 1.73335 1.15016 1.19944
1.19989 1.22472 1.03207 0.93709 0.86098 1.25693 0.94836 0.97959
0.99348 1.70015 1.29206 1.24655 1.22695 0.85988 0.79140 0.80926
0.78900 1.19295 1.20511 1.19195 1.13846 0.80481 0.74111 0.74469
1.93374 1.58947 1.58598 1.85456 1.93349 1.84545 1.40065 1.80072
1.31372 1.31481 1.12441 1.01904 1.20711 0.93487 0.92883 0.96346
1.23282 0.86662 0.81896 0.75752 1.90641 1.33191 1.77276 1.38780
1.84476 1.51165 1.29910 1.65423 1.22489 0.95548 1.00706 0.95565
1.22596 1.01045 0.96718 0.96336 1.22295 0.97813 0.96835 0.98474
1.22734 1.01231 0.96242 0.98129 0.78547 0.90572 0.84879 0.91083
0.85993 0.85650 0.73283 0.89635 0.90808 0.91503 0.91013 0.91185
0.91144 0.88938 0.88545
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.28 -5.53 19.25 29.55 0.57 -4.96 16
2 C -0.10 -2.22 11.21 -37.12 -0.42 -2.64 16
3 C 0.24 5.25 5.43 -6.83 -0.04 5.21 16
4 N -0.80 -18.92 2.81 -62.77 -0.18 -19.10 16
5 C -0.25 -5.99 9.46 -15.06 -0.14 -6.14 16
6 H 0.12 2.93 7.04 -52.49 -0.37 2.57 16
7 C 0.03 0.75 5.39 -17.43 -0.09 0.66 16
8 N -0.83 -19.10 8.17 55.49 0.45 -18.64 16
9 Si 0.93 18.19 29.56 -169.99 -5.02 13.16 16
10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16
11 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16
12 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16
13 S 2.47 57.12 4.79 -107.50 -0.51 56.61 16
14 O -0.97 -24.72 14.93 -59.40 -0.89 -25.61 16
15 O -0.99 -24.13 14.68 -57.54 -0.84 -24.97 16
16 C -0.65 -12.56 4.75 37.16 0.18 -12.39 16
17 C -0.03 -0.56 0.63 -154.54 -0.10 -0.66 16
18 C 0.48 9.21 4.73 36.01 0.17 9.38 16
19 O -0.51 -10.77 15.97 -18.75 -0.30 -11.07 16
20 O -0.50 -8.41 12.98 -40.76 -0.53 -8.94 16
21 C -0.10 -1.46 5.90 -25.03 -0.15 -1.61 16
22 C -0.13 -1.57 6.91 -24.70 -0.17 -1.74 16
23 C -0.12 -1.53 6.83 -25.07 -0.17 -1.70 16
24 C -0.15 -2.51 5.48 -25.61 -0.14 -2.65 16
25 H 0.20 3.11 7.80 -54.08 -0.42 2.69 16
26 H 0.08 1.61 6.84 -51.93 -0.35 1.26 16
27 H 0.13 3.04 6.28 -51.93 -0.33 2.72 16
28 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16
29 H 0.12 2.19 8.14 -51.93 -0.42 1.77 16
30 H 0.13 2.38 8.14 -51.92 -0.42 1.96 16
31 H 0.41 5.14 9.10 45.56 0.41 5.55 16
32 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16
33 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16
34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
38 H 0.09 1.71 6.40 -51.93 -0.33 1.37 16
39 H 0.10 1.76 5.96 -51.93 -0.31 1.45 16
LS Contribution 333.39 15.07 5.02 5.02
Total: -1.00 -30.15 333.39 -7.48 -37.63
By element:
Atomic # 1 Polarization: 19.32 SS G_CDS: -4.18 Total: 15.13 kcal
Atomic # 6 Polarization: -18.73 SS G_CDS: -0.50 Total: -19.23 kcal
Atomic # 7 Polarization: -38.02 SS G_CDS: 0.28 Total: -37.74 kcal
Atomic # 8 Polarization: -68.03 SS G_CDS: -2.56 Total: -70.59 kcal
Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.16 kcal
Atomic # 16 Polarization: 57.12 SS G_CDS: -0.51 Total: 56.61 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -30.15 -7.48 -37.63 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001609152757.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.287 kcal
(2) G-P(sol) polarization free energy of solvation -30.152 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.440 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds