Wall clock time and date at job start Tue Mar 31 2020 10:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46510 * 109.47083 * 162.15814 * 3 2 1 5 5 C 1.36938 * 119.99713 * 86.21386 * 4 3 2 6 6 H 1.07999 * 119.99286 * 160.88311 * 5 4 3 7 7 C 1.38810 * 120.00420 * 340.88051 * 5 4 3 8 8 N 1.31617 * 120.00042 * 7.57633 * 7 5 4 9 9 Si 1.86802 * 119.99931 * 187.58192 * 7 5 4 10 10 H 1.48502 * 109.47044 * 59.99845 * 9 7 5 11 11 H 1.48502 * 109.46808 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47098 * 299.99938 * 9 7 5 13 13 S 1.65594 * 119.99803 * 266.21967 * 4 3 2 14 14 O 1.42101 * 104.27772 * 206.06833 * 13 4 3 15 15 O 1.42100 * 104.27879 * 333.92594 * 13 4 3 16 16 C 1.81402 * 104.45102 * 89.99476 * 13 4 3 17 17 C 1.52996 * 109.47212 * 175.96275 * 16 13 4 18 18 C 1.50704 * 110.02000 * 303.94322 * 17 16 13 19 19 O 1.20821 * 120.00396 * 124.98504 * 18 17 16 20 20 O 1.34233 * 119.99616 * 304.98712 * 18 17 16 21 21 C 1.54268 * 110.03688 * 182.54753 * 17 16 13 22 22 C 1.54957 * 104.16208 * 217.13824 * 21 17 16 23 23 C 1.54891 * 102.77925 * 37.88929 * 22 21 17 24 24 C 1.53874 * 110.03058 * 65.33267 * 17 16 13 25 25 H 4.40644 * 5.51343 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.48041 * 42.15865 * 3 2 1 27 27 H 1.08999 * 109.47129 * 282.15028 * 3 2 1 28 28 H 0.96995 * 120.00014 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47231 * 295.96957 * 16 13 4 30 30 H 1.09005 * 109.46632 * 55.96811 * 16 13 4 31 31 H 0.96698 * 116.99647 * 180.02562 * 20 18 17 32 32 H 1.09000 * 110.48008 * 335.78991 * 21 17 16 33 33 H 1.09001 * 110.48276 * 98.42659 * 21 17 16 34 34 H 1.08996 * 110.72408 * 279.57266 * 22 21 17 35 35 H 1.09003 * 110.76453 * 156.22035 * 22 21 17 36 36 H 1.09001 * 110.48877 * 203.40260 * 23 22 21 37 37 H 1.08999 * 110.49058 * 80.75609 * 23 22 21 38 38 H 1.09007 * 110.03328 * 238.57140 * 24 17 16 39 39 H 1.09000 * 110.03234 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3158 -0.4232 5 6 3.2877 2.3177 0.4975 6 1 3.9190 3.1647 0.2731 7 6 2.6323 2.2446 1.7189 8 7 1.9848 1.1488 2.0539 9 14 2.6693 3.7017 2.8873 10 1 2.0617 4.8834 2.2242 11 1 1.8993 3.3724 4.1137 12 1 4.0758 4.0078 3.2525 13 16 3.4987 1.5905 -2.0149 14 8 4.4635 2.6332 -1.9783 15 8 3.8274 0.3059 -2.5259 16 6 1.9457 2.1854 -2.7393 17 6 2.1801 2.5731 -4.2006 18 6 3.2842 3.5948 -4.2926 19 8 4.2411 3.3881 -5.0006 20 8 3.2043 4.7344 -3.5879 21 6 0.8824 3.1410 -4.8115 22 6 0.8837 2.6085 -6.2667 23 6 1.4575 1.1786 -6.1078 24 6 2.5460 1.3261 -5.0246 25 1 -1.0502 -0.0005 0.0000 26 1 3.0098 -0.7609 -0.6897 27 1 3.0094 -0.2155 1.0046 28 1 1.5266 1.0979 2.9072 29 1 1.1954 1.3964 -2.6885 30 1 1.5958 3.0558 -2.1841 31 1 3.9364 5.3595 -3.6796 32 1 0.0119 2.7700 -4.2704 33 1 0.9020 4.2308 -4.8033 34 1 1.5306 3.2162 -6.8993 35 1 -0.1296 2.5757 -6.6671 36 1 1.8961 0.8371 -7.0454 37 1 0.6802 0.4902 -5.7761 38 1 3.5218 1.4603 -5.4916 39 1 2.5570 0.4448 -4.3833 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609152757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:59 Heat of formation + Delta-G solvation = -115.613156 kcal Electronic energy + Delta-G solvation = -26182.604184 eV Core-core repulsion = 22411.760342 eV Total energy + Delta-G solvation = -3770.843842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.92570 -38.90419 -38.13132 -37.77914 -37.18952 -36.59858 -33.70826 -32.96382 -32.76505 -29.85670 -28.36554 -27.01165 -25.54824 -24.58427 -21.91335 -20.66251 -20.33758 -19.63838 -18.99291 -18.76667 -18.27351 -18.04403 -17.06205 -16.77759 -16.57369 -16.19111 -15.91984 -15.57761 -15.25659 -14.97291 -14.42460 -14.30210 -14.20515 -13.77549 -13.31215 -13.14453 -13.11267 -12.83172 -12.82025 -12.69358 -12.68414 -12.60452 -12.33727 -12.13257 -12.07023 -12.02199 -11.93053 -11.69785 -11.55507 -11.34142 -11.18567 -10.88687 -10.51909 -10.02240 -8.28569 -5.92375 -0.39357 0.98554 1.49923 1.52385 1.57971 1.87658 1.93534 2.32828 2.45608 2.62517 2.97175 3.11722 3.25490 3.36106 3.52964 3.70937 3.96061 4.10993 4.16616 4.28895 4.35023 4.40351 4.52718 4.59393 4.69877 4.80778 4.84756 4.97730 5.03910 5.12758 5.15034 5.15353 5.32892 5.36792 5.44919 5.50489 5.63305 6.39873 6.77118 6.83382 7.18481 7.22954 8.58467 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.005906 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.842934 B = 4739.571526 C = 5246.871389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.147 4.147 3 C 0.237 3.763 4 N -0.821 5.821 5 C -0.288 4.288 6 H 0.108 0.892 7 C 0.006 3.994 8 N -0.843 5.843 9 Si 0.980 3.020 10 H -0.266 1.266 11 H -0.273 1.273 12 H -0.269 1.269 13 S 2.488 3.512 14 O -1.002 7.002 15 O -1.009 7.009 16 C -0.633 4.633 17 C -0.041 4.041 18 C 0.476 3.524 19 O -0.539 6.539 20 O -0.498 6.498 21 C -0.102 4.102 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.155 4.155 25 H 0.235 0.765 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.279 0.721 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.425 0.575 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 2.859 -8.043 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.150 4.150 3 C 0.112 3.888 4 N -0.644 5.644 5 C -0.431 4.431 6 H 0.126 0.874 7 C -0.203 4.203 8 N -0.483 5.483 9 Si 0.803 3.197 10 H -0.191 1.191 11 H -0.198 1.198 12 H -0.194 1.194 13 S 2.590 3.410 14 O -0.992 6.992 15 O -0.999 6.999 16 C -0.757 4.757 17 C -0.044 4.044 18 C 0.319 3.681 19 O -0.430 6.430 20 O -0.310 6.310 21 C -0.140 4.140 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.193 4.193 25 H 0.252 0.748 26 H 0.093 0.907 27 H 0.137 0.863 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.286 0.714 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.028 2.278 -8.666 11.388 hybrid contribution 0.098 1.194 0.857 1.473 sum -6.930 3.472 -7.809 11.003 Atomic orbital electron populations 1.25109 0.96161 1.01257 1.04798 1.23612 0.94975 0.99338 0.97031 1.18360 0.84798 0.83167 1.02474 1.53805 1.75146 1.15571 1.19887 1.19925 1.24680 1.03299 0.95227 0.87437 1.26224 0.94362 0.99816 0.99899 1.70105 1.29794 1.25387 1.22970 0.85186 0.78906 0.78307 0.77343 1.19123 1.19780 1.19398 1.12198 0.80891 0.73483 0.74417 1.93349 1.60566 1.59220 1.86052 1.93338 1.85275 1.40862 1.80394 1.31034 1.28213 1.13195 1.03227 1.20946 0.95233 0.93064 0.95108 1.23685 0.86608 0.82485 0.75358 1.90628 1.34228 1.77976 1.40118 1.84439 1.52094 1.29744 1.64710 1.22579 0.93515 1.01268 0.96668 1.22614 1.02860 0.95459 0.95054 1.22346 0.96860 0.98225 0.97563 1.22793 1.02024 0.95298 0.99153 0.74822 0.90661 0.86269 0.91041 0.84105 0.84880 0.71362 0.87987 0.89925 0.91700 0.87688 0.89808 0.89435 0.91000 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.35 19.25 74.32 1.43 -7.92 16 2 C -0.15 -6.25 11.21 31.12 0.35 -5.90 16 3 C 0.24 10.86 5.43 84.57 0.46 11.32 16 4 N -0.82 -39.64 2.81 -352.50 -0.99 -40.63 16 5 C -0.29 -14.33 9.46 84.03 0.79 -13.54 16 6 H 0.11 5.45 7.04 -2.91 -0.02 5.43 16 7 C 0.01 0.26 5.39 84.86 0.46 0.72 16 8 N -0.84 -39.30 8.17 21.65 0.18 -39.13 16 9 Si 0.98 37.32 29.56 68.60 2.03 39.34 16 10 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 12 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 13 S 2.49 116.55 4.79 -56.49 -0.27 116.28 16 14 O -1.00 -52.09 14.93 -125.88 -1.88 -53.97 16 15 O -1.01 -50.19 14.68 -127.65 -1.87 -52.06 16 16 C -0.63 -23.41 4.75 71.98 0.34 -23.06 16 17 C -0.04 -1.38 0.63 -52.20 -0.03 -1.41 16 18 C 0.48 17.82 4.73 71.24 0.34 18.15 16 19 O -0.54 -22.84 15.97 21.98 0.35 -22.49 16 20 O -0.50 -16.25 12.98 -50.02 -0.65 -16.90 16 21 C -0.10 -2.48 5.90 31.69 0.19 -2.29 16 22 C -0.12 -2.47 6.91 31.91 0.22 -2.25 16 23 C -0.11 -2.60 6.83 31.67 0.22 -2.39 16 24 C -0.16 -5.16 5.48 31.32 0.17 -4.99 16 25 H 0.24 6.41 7.80 -4.41 -0.03 6.38 16 26 H 0.08 3.32 6.84 -2.39 -0.02 3.30 16 27 H 0.12 5.70 6.28 -2.39 -0.02 5.69 16 28 H 0.28 12.28 8.31 -92.71 -0.77 11.51 16 29 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 30 H 0.13 4.82 8.14 -2.39 -0.02 4.80 16 31 H 0.43 10.38 9.10 -74.06 -0.67 9.71 16 32 H 0.10 2.17 7.85 -2.39 -0.02 2.15 16 33 H 0.08 1.88 7.75 -2.39 -0.02 1.86 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.67 6.40 -2.38 -0.02 2.66 16 39 H 0.08 2.87 5.96 -2.39 -0.01 2.86 16 Total: -1.00 -66.16 333.39 2.23 -63.93 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: 0.41 Total: 39.16 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 4.93 Total: -33.56 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -0.82 Total: -79.76 kcal Atomic # 8 Polarization: -141.35 SS G_CDS: -4.05 Total: -145.41 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 16 Polarization: 116.55 SS G_CDS: -0.27 Total: 116.28 kcal Total: -66.16 2.23 -63.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609152757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.683 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds