Wall clock time and date at job start Tue Mar 31 2020 10:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38177 * 120.02778 * 2 1 4 4 C 1.38241 * 120.11608 * 180.27880 * 3 2 1 5 5 C 1.38319 * 120.15678 * 359.48691 * 4 3 2 6 6 C 1.38259 * 120.04823 * 0.26051 * 5 4 3 7 7 F 1.35105 * 120.05634 * 180.02562 * 6 5 4 8 8 C 1.38793 * 120.02073 * 179.77158 * 2 1 3 9 9 N 1.39970 * 120.08068 * 359.95211 * 8 2 1 10 10 C 1.34780 * 119.99816 * 133.44309 * 9 8 2 11 11 O 1.21607 * 119.99685 * 5.65186 * 10 9 8 12 12 C 1.47506 * 119.99938 * 185.64747 * 10 9 8 13 13 C 1.39683 * 120.19587 * 0.02562 * 12 10 9 14 14 C 1.37822 * 119.91553 * 180.02562 * 13 12 10 15 15 C 1.38579 * 120.32477 * 0.02562 * 14 13 12 16 16 C 1.38031 * 120.40405 * 359.97438 * 15 14 13 17 17 C 1.38831 * 120.07074 * 359.72003 * 16 15 14 18 18 O 1.35522 * 120.15778 * 180.27977 * 17 16 15 19 19 C 1.34808 * 117.00310 * 5.69839 * 18 17 16 20 20 H 1.08006 * 120.00153 * 354.93411 * 19 18 17 21 21 C 1.38696 * 120.00038 * 174.93809 * 19 18 17 22 22 N 1.31515 * 120.00230 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00078 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47251 * 59.99537 * 23 21 19 25 25 H 1.48500 * 109.47016 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46732 * 299.99605 * 23 21 19 27 27 H 1.08994 * 109.47144 * 270.23166 * 1 2 3 28 28 H 1.09008 * 109.46741 * 30.22951 * 1 2 3 29 29 H 1.09003 * 109.47290 * 150.22700 * 1 2 3 30 30 H 1.07996 * 119.94391 * 0.04678 * 3 2 1 31 31 H 1.07999 * 119.92378 * 179.77190 * 4 3 2 32 32 H 1.07999 * 119.97068 * 180.23308 * 5 4 3 33 33 H 0.97004 * 119.99901 * 313.44771 * 9 8 2 34 34 H 1.07996 * 120.04372 * 0.02562 * 13 12 10 35 35 H 1.07994 * 119.84056 * 179.97438 * 14 13 12 36 36 H 1.08005 * 119.79851 * 179.97438 * 15 14 13 37 37 H 1.07997 * 119.96153 * 180.02562 * 16 15 14 38 38 H 0.97006 * 120.00644 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5809 1.1984 -0.0058 5 6 4.2776 0.0036 -0.0010 6 6 3.5925 -1.1973 0.0043 7 9 4.2729 -2.3645 0.0096 8 6 2.2014 -1.2017 0.0048 9 7 1.5037 -2.4151 0.0106 10 6 1.8630 -3.4031 -0.8328 11 8 2.8550 -3.2804 -1.5255 12 6 1.0531 -4.6331 -0.9155 13 6 -0.0873 -4.7781 -0.1220 14 6 -0.8395 -5.9301 -0.2035 15 6 -0.4701 -6.9472 -1.0692 16 6 0.6543 -6.8180 -1.8594 17 6 1.4206 -5.6621 -1.7953 18 8 2.5216 -5.5310 -2.5744 19 6 2.7536 -6.5066 -3.4754 20 1 2.1231 -7.3833 -3.4964 21 6 3.8018 -6.3845 -4.3753 22 7 4.5693 -5.3168 -4.3501 23 14 4.1228 -7.7361 -5.6243 24 1 2.9267 -7.9065 -6.4877 25 1 5.2904 -7.3668 -6.4642 26 1 4.4061 -9.0091 -4.9141 27 1 -0.3633 0.0042 1.0276 28 1 -0.3633 0.8880 -0.5174 29 1 -0.3634 -0.8920 -0.5103 30 1 1.6580 2.1313 0.0008 31 1 4.1182 2.1353 -0.0095 32 1 5.3576 0.0088 -0.0017 33 1 0.7616 -2.5449 0.6217 34 1 -0.3792 -3.9885 0.5545 35 1 -1.7207 -6.0410 0.4108 36 1 -1.0655 -7.8464 -1.1260 37 1 0.9354 -7.6149 -2.5319 38 1 5.3022 -5.2312 -4.9798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179875708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:32 Heat of formation + Delta-G solvation = -45.557363 kcal Electronic energy + Delta-G solvation = -25846.653267 eV Core-core repulsion = 21955.776111 eV Total energy + Delta-G solvation = -3890.877157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.25259 -40.08136 -39.07687 -37.73402 -36.37574 -34.36396 -32.38411 -32.28081 -30.85140 -29.05172 -28.87703 -26.92993 -25.41731 -23.73366 -22.23886 -21.65221 -21.19011 -19.96301 -18.21549 -17.87078 -17.11006 -16.46852 -16.35709 -16.01468 -14.99669 -14.77138 -14.63902 -14.32813 -14.22684 -14.10343 -13.79707 -13.62948 -13.57537 -13.15836 -13.09932 -12.80471 -12.54646 -12.08369 -11.73497 -11.71168 -11.64514 -11.35333 -11.17021 -11.12265 -10.90677 -10.84452 -10.49362 -9.78597 -9.61194 -8.98064 -8.89255 -8.49697 -8.34515 -7.94321 -7.34415 -6.45791 -4.06132 1.24264 1.34581 1.69159 2.28573 3.10854 3.13096 3.15722 3.45283 3.56087 3.79334 3.92105 4.48240 4.58892 4.83347 4.90175 5.03252 5.13944 5.22168 5.25834 5.41247 5.45539 5.52115 5.55455 5.61452 5.69654 5.92831 6.01327 6.07432 6.14738 6.23166 6.40051 6.47270 6.52125 6.63261 6.73535 6.86418 7.01670 7.18165 7.22565 7.26750 7.65242 7.83349 7.94749 8.91749 8.96192 9.64123 10.67410 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.004750 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.395128 B = 5892.903559 C = 7536.965839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.123 4.123 4 C -0.105 4.105 5 C -0.151 4.151 6 C 0.113 3.887 7 F -0.115 7.115 8 C 0.122 3.878 9 N -0.686 5.686 10 C 0.548 3.452 11 O -0.470 6.470 12 C -0.227 4.227 13 C -0.038 4.038 14 C -0.230 4.230 15 C -0.049 4.049 16 C -0.236 4.236 17 C 0.190 3.810 18 O -0.121 6.121 19 C -0.405 4.405 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.829 5.829 23 Si 0.941 3.059 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.268 1.268 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.404 0.596 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 9.066 9.617 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.124 4.124 5 C -0.171 4.171 6 C 0.091 3.909 7 F -0.094 7.094 8 C 0.026 3.974 9 N -0.336 5.336 10 C 0.338 3.662 11 O -0.341 6.341 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.249 4.249 15 C -0.068 4.068 16 C -0.255 4.255 17 C 0.129 3.871 18 O -0.019 6.019 19 C -0.480 4.480 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.460 5.460 23 Si 0.765 3.235 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.193 1.193 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.241 0.759 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.803 9.300 8.873 14.543 hybrid contribution -0.116 -1.040 -0.317 1.093 sum -6.920 8.260 8.556 13.759 Atomic orbital electron populations 1.20742 0.90491 1.03507 1.02295 1.19671 0.96371 0.91158 1.01549 1.20827 0.94070 0.96939 1.02378 1.20880 0.94052 0.97261 1.00226 1.21059 1.00853 0.90988 1.04154 1.17725 0.88819 0.82424 1.01891 1.91616 1.79279 1.45502 1.92961 1.17529 0.89606 0.86551 1.03700 1.43508 1.36385 1.12632 1.41061 1.18447 0.85270 0.82789 0.79647 1.91012 1.24043 1.78486 1.40593 1.18649 1.01307 0.95450 1.07766 1.20739 0.92627 0.96731 0.95557 1.20448 1.02983 0.95979 1.05510 1.20913 0.94859 0.97379 0.93633 1.21156 0.98889 0.99571 1.05883 1.19238 0.86387 0.91551 0.89885 1.84168 1.33139 1.44086 1.40477 1.21462 1.16012 0.99109 1.11435 0.88845 1.25403 0.95231 0.97993 0.97675 1.70122 1.15600 1.25976 1.34301 0.85789 0.78534 0.79632 0.79514 1.19332 1.20120 1.19315 0.91029 0.91036 0.91093 0.85444 0.85303 0.84766 0.75928 0.87131 0.87166 0.87086 0.84991 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.58 36.01 0.35 -0.80 16 2 C -0.08 -1.12 5.90 -104.44 -0.62 -1.74 16 3 C -0.12 -1.41 9.70 -39.60 -0.38 -1.80 16 4 C -0.11 -1.25 10.04 -39.55 -0.40 -1.65 16 5 C -0.15 -2.24 10.02 -39.54 -0.40 -2.64 16 6 C 0.11 2.11 6.63 -39.25 -0.26 1.85 16 7 F -0.12 -2.62 14.37 2.25 0.03 -2.59 16 8 C 0.12 2.06 6.06 -83.61 -0.51 1.56 16 9 N -0.69 -11.87 4.36 -10.75 -0.05 -11.92 16 10 C 0.55 12.41 7.27 -12.48 -0.09 12.32 16 11 O -0.47 -13.17 12.35 -16.58 -0.20 -13.38 16 12 C -0.23 -4.96 5.89 -104.82 -0.62 -5.58 16 13 C -0.04 -0.64 9.53 -39.19 -0.37 -1.01 16 14 C -0.23 -3.71 10.02 -39.61 -0.40 -4.11 16 15 C -0.05 -0.86 10.03 -39.53 -0.40 -1.26 16 16 C -0.24 -5.05 9.16 -39.44 -0.36 -5.41 16 17 C 0.19 4.73 6.66 -38.60 -0.26 4.47 16 18 O -0.12 -3.60 7.84 -21.04 -0.16 -3.77 16 19 C -0.40 -11.50 9.49 30.90 0.29 -11.21 16 20 H 0.09 2.39 5.21 -52.48 -0.27 2.12 16 21 C 0.05 1.27 5.49 -17.52 -0.10 1.18 16 22 N -0.83 -25.27 13.67 55.48 0.76 -24.51 16 23 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 29 H 0.07 0.79 7.37 -51.93 -0.38 0.40 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.40 5.41 6.48 -40.82 -0.26 5.15 16 34 H 0.11 1.42 6.42 -52.49 -0.34 1.08 16 35 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -35.95 330.87 -7.82 -43.77 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -3.65 Total: 7.62 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -4.51 Total: -15.82 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.71 Total: -36.43 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.37 Total: -17.14 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.03 Total: -2.59 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.95 -7.82 -43.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179875708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.787 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds