Wall clock time and date at job start Tue Mar 31 2020 10:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38177 * 120.02778 * 2 1 4 4 C 1.38241 * 120.11608 * 180.27880 * 3 2 1 5 5 C 1.38319 * 120.15678 * 359.48691 * 4 3 2 6 6 C 1.38259 * 120.04823 * 0.26051 * 5 4 3 7 7 F 1.35105 * 120.05634 * 180.02562 * 6 5 4 8 8 C 1.38793 * 120.02073 * 179.77158 * 2 1 3 9 9 N 1.39970 * 120.08068 * 359.95211 * 8 2 1 10 10 C 1.34780 * 119.99816 * 133.44309 * 9 8 2 11 11 O 1.21607 * 119.99685 * 5.65186 * 10 9 8 12 12 C 1.47506 * 119.99938 * 185.64747 * 10 9 8 13 13 C 1.39683 * 120.19587 * 0.02562 * 12 10 9 14 14 C 1.37822 * 119.91553 * 180.02562 * 13 12 10 15 15 C 1.38579 * 120.32477 * 0.02562 * 14 13 12 16 16 C 1.38031 * 120.40405 * 359.97438 * 15 14 13 17 17 C 1.38831 * 120.07074 * 359.72003 * 16 15 14 18 18 O 1.35522 * 120.15778 * 180.27977 * 17 16 15 19 19 C 1.34808 * 117.00310 * 5.69839 * 18 17 16 20 20 H 1.08006 * 120.00153 * 354.93411 * 19 18 17 21 21 C 1.38696 * 120.00038 * 174.93809 * 19 18 17 22 22 N 1.31515 * 120.00230 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00078 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47251 * 59.99537 * 23 21 19 25 25 H 1.48500 * 109.47016 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46732 * 299.99605 * 23 21 19 27 27 H 1.08994 * 109.47144 * 270.23166 * 1 2 3 28 28 H 1.09008 * 109.46741 * 30.22951 * 1 2 3 29 29 H 1.09003 * 109.47290 * 150.22700 * 1 2 3 30 30 H 1.07996 * 119.94391 * 0.04678 * 3 2 1 31 31 H 1.07999 * 119.92378 * 179.77190 * 4 3 2 32 32 H 1.07999 * 119.97068 * 180.23308 * 5 4 3 33 33 H 0.97004 * 119.99901 * 313.44771 * 9 8 2 34 34 H 1.07996 * 120.04372 * 0.02562 * 13 12 10 35 35 H 1.07994 * 119.84056 * 179.97438 * 14 13 12 36 36 H 1.08005 * 119.79851 * 179.97438 * 15 14 13 37 37 H 1.07997 * 119.96153 * 180.02562 * 16 15 14 38 38 H 0.97006 * 120.00644 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5809 1.1984 -0.0058 5 6 4.2776 0.0036 -0.0010 6 6 3.5925 -1.1973 0.0043 7 9 4.2729 -2.3645 0.0096 8 6 2.2014 -1.2017 0.0048 9 7 1.5037 -2.4151 0.0106 10 6 1.8630 -3.4031 -0.8328 11 8 2.8550 -3.2804 -1.5255 12 6 1.0531 -4.6331 -0.9155 13 6 -0.0873 -4.7781 -0.1220 14 6 -0.8395 -5.9301 -0.2035 15 6 -0.4701 -6.9472 -1.0692 16 6 0.6543 -6.8180 -1.8594 17 6 1.4206 -5.6621 -1.7953 18 8 2.5216 -5.5310 -2.5744 19 6 2.7536 -6.5066 -3.4754 20 1 2.1231 -7.3833 -3.4964 21 6 3.8018 -6.3845 -4.3753 22 7 4.5693 -5.3168 -4.3501 23 14 4.1228 -7.7361 -5.6243 24 1 2.9267 -7.9065 -6.4877 25 1 5.2904 -7.3668 -6.4642 26 1 4.4061 -9.0091 -4.9141 27 1 -0.3633 0.0042 1.0276 28 1 -0.3633 0.8880 -0.5174 29 1 -0.3634 -0.8920 -0.5103 30 1 1.6580 2.1313 0.0008 31 1 4.1182 2.1353 -0.0095 32 1 5.3576 0.0088 -0.0017 33 1 0.7616 -2.5449 0.6217 34 1 -0.3792 -3.9885 0.5545 35 1 -1.7207 -6.0410 0.4108 36 1 -1.0655 -7.8464 -1.1260 37 1 0.9354 -7.6149 -2.5319 38 1 5.3022 -5.2312 -4.9798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179875708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:31 Heat of formation + Delta-G solvation = -69.590135 kcal Electronic energy + Delta-G solvation = -25847.695406 eV Core-core repulsion = 21955.776111 eV Total energy + Delta-G solvation = -3891.919296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.76036 -41.60408 -40.55330 -39.28302 -38.06356 -35.84471 -34.35946 -33.38078 -32.35081 -30.62109 -30.20789 -27.92443 -27.38607 -25.22823 -23.66401 -23.00520 -22.50494 -21.50604 -19.92947 -19.54799 -18.50990 -18.08362 -17.70069 -17.39438 -16.53378 -16.36975 -16.21293 -15.99189 -15.80480 -15.55882 -15.31174 -15.10738 -14.72954 -14.51570 -14.39156 -14.29752 -14.11901 -13.57529 -13.08897 -13.03256 -12.73649 -12.68441 -12.65647 -12.52386 -12.39258 -12.23001 -12.17590 -11.47966 -11.16429 -10.85250 -10.73700 -9.90988 -9.60033 -9.25646 -9.04916 -8.46790 -6.18668 -0.03514 0.20599 0.26021 0.69818 1.29795 1.43361 1.48352 2.00082 2.06445 2.13994 2.61815 2.84864 3.18695 3.33136 3.42394 3.77822 3.89730 3.96653 4.03566 4.22638 4.26974 4.32533 4.46526 4.51286 4.63668 4.68261 4.84600 4.92900 4.98995 5.03337 5.08026 5.14027 5.26027 5.37032 5.41925 5.44069 5.52861 5.57433 5.66440 5.92178 6.01477 6.13653 6.47220 6.91607 7.34553 7.76942 8.73291 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.004750 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.395128 B = 5892.903559 C = 7536.965839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C -0.112 4.112 4 C -0.091 4.091 5 C -0.165 4.165 6 C 0.058 3.942 7 F -0.156 7.156 8 C 0.087 3.913 9 N -0.662 5.662 10 C 0.541 3.459 11 O -0.537 6.537 12 C -0.245 4.245 13 C -0.029 4.029 14 C -0.198 4.198 15 C -0.037 4.037 16 C -0.257 4.257 17 C 0.150 3.850 18 O -0.189 6.189 19 C -0.429 4.429 20 H 0.109 0.891 21 C -0.023 4.023 22 N -0.906 5.906 23 Si 1.024 2.976 24 H -0.252 1.252 25 H -0.274 1.274 26 H -0.253 1.253 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.139 0.861 33 H 0.422 0.578 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.684 10.282 11.848 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.109 4.109 5 C -0.185 4.185 6 C 0.037 3.963 7 F -0.135 7.135 8 C -0.008 4.008 9 N -0.313 5.313 10 C 0.332 3.668 11 O -0.413 6.413 12 C -0.250 4.250 13 C -0.048 4.048 14 C -0.216 4.216 15 C -0.055 4.055 16 C -0.276 4.276 17 C 0.094 3.906 18 O -0.091 6.091 19 C -0.505 4.505 20 H 0.126 0.874 21 C -0.222 4.222 22 N -0.541 5.541 23 Si 0.841 3.159 24 H -0.176 1.176 25 H -0.199 1.199 26 H -0.177 1.177 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.192 0.808 31 H 0.188 0.812 32 H 0.157 0.843 33 H 0.263 0.737 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.174 0.826 37 H 0.142 0.858 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.603 10.530 11.198 19.259 hybrid contribution 0.944 -1.211 -0.618 1.655 sum -10.659 9.320 10.580 17.675 Atomic orbital electron populations 1.20866 0.87721 1.04038 1.04324 1.20158 0.98343 0.90112 0.99534 1.21424 0.94018 0.97983 0.99589 1.21407 0.94745 0.97340 0.97405 1.21334 1.01512 0.91055 1.04557 1.18467 0.90230 0.82322 1.05267 1.91503 1.80216 1.47953 1.93783 1.17911 0.89257 0.87470 1.06162 1.43089 1.36306 1.11987 1.39915 1.18794 0.84519 0.83925 0.79522 1.90992 1.26868 1.79857 1.43584 1.19138 1.02941 0.94740 1.08162 1.21305 0.90217 0.98716 0.94531 1.21192 1.03134 0.93884 1.03385 1.21476 0.92987 0.99380 0.91658 1.21307 1.00441 0.98413 1.07421 1.20083 0.86548 0.93807 0.90144 1.84183 1.36330 1.45588 1.43026 1.22023 1.16703 0.99732 1.12000 0.87431 1.26813 0.94659 1.00832 0.99916 1.70337 1.17521 1.29550 1.36705 0.84609 0.78747 0.76109 0.76391 1.17600 1.19855 1.17721 0.88060 0.88678 0.92395 0.80770 0.81185 0.84327 0.73732 0.82205 0.81467 0.82573 0.85782 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.58 71.24 0.68 -1.12 16 2 C -0.08 -1.91 5.90 -19.75 -0.12 -2.02 16 3 C -0.11 -2.13 9.70 22.26 0.22 -1.91 16 4 C -0.09 -1.92 10.04 22.29 0.22 -1.70 16 5 C -0.17 -5.08 10.02 22.29 0.22 -4.85 16 6 C 0.06 2.34 6.63 22.48 0.15 2.49 16 7 F -0.16 -7.95 14.37 44.97 0.65 -7.30 16 8 C 0.09 3.00 6.06 38.18 0.23 3.23 16 9 N -0.66 -23.29 4.36 -306.18 -1.34 -24.63 16 10 C 0.54 26.08 7.27 86.69 0.63 26.71 16 11 O -0.54 -33.29 12.35 16.84 0.21 -33.08 16 12 C -0.25 -10.98 5.89 -19.99 -0.12 -11.10 16 13 C -0.03 -0.89 9.53 22.52 0.21 -0.68 16 14 C -0.20 -5.21 10.02 22.25 0.22 -4.99 16 15 C -0.04 -1.14 10.03 22.30 0.22 -0.92 16 16 C -0.26 -11.08 9.16 22.36 0.20 -10.88 16 17 C 0.15 7.90 6.66 22.91 0.15 8.05 16 18 O -0.19 -12.36 7.84 0.88 0.01 -12.35 16 19 C -0.43 -26.52 9.49 67.93 0.64 -25.87 16 20 H 0.11 5.92 5.21 -2.91 -0.02 5.91 16 21 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 22 N -0.91 -60.96 13.67 21.62 0.30 -60.66 16 23 Si 1.02 45.15 29.55 68.60 2.03 47.18 16 24 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.12 8.09 -2.38 -0.02 1.10 16 29 H 0.06 1.10 7.37 -2.39 -0.02 1.08 16 30 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 31 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.42 10.59 6.48 -92.71 -0.60 9.99 16 34 H 0.16 3.22 6.42 -2.91 -0.02 3.20 16 35 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 37 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 38 H 0.27 16.72 8.31 -92.70 -0.77 15.95 16 Total: -1.00 -96.50 330.87 6.63 -89.88 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.53 Total: 27.45 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.25 Total: -26.48 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.04 Total: -85.29 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: 0.21 Total: -45.44 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.65 Total: -7.30 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -96.50 6.63 -89.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179875708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.286 kcal (2) G-P(sol) polarization free energy of solvation -96.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds