Wall clock time and date at job start Tue Mar 31 2020 11:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33385 * 125.20386 * 2 1 4 4 C 1.38428 * 114.92419 * 179.73312 * 3 2 1 5 5 C 1.50699 * 122.54236 * 180.02562 * 4 3 2 6 6 C 1.33387 * 114.91789 * 359.97438 * 4 3 2 7 7 C 1.50701 * 125.20143 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47104 * 94.47992 * 7 6 4 9 9 O 1.21276 * 120.00286 * 5.17917 * 8 7 6 10 10 N 1.34782 * 119.99592 * 185.18040 * 8 7 6 11 11 C 1.37136 * 120.00092 * 352.17176 * 10 8 7 12 12 H 1.08001 * 120.00415 * 296.81295 * 11 10 8 13 13 C 1.38893 * 119.99600 * 116.80814 * 11 10 8 14 14 N 1.31419 * 119.99955 * 173.54562 * 13 11 10 15 15 Si 1.86799 * 120.00221 * 353.54736 * 13 11 10 16 16 H 1.48507 * 109.46901 * 83.74843 * 15 13 11 17 17 H 1.48493 * 109.47445 * 203.75258 * 15 13 11 18 18 H 1.48497 * 109.47138 * 323.75248 * 15 13 11 19 19 C 1.39796 * 119.99908 * 172.17904 * 10 8 7 20 20 C 1.38960 * 120.07504 * 352.61525 * 19 10 8 21 21 C 1.38084 * 119.91905 * 179.79151 * 20 19 10 22 22 C 1.38308 * 120.07709 * 0.46240 * 21 20 19 23 23 C 1.38309 * 120.15754 * 359.79153 * 22 21 20 24 24 C 1.38082 * 120.07476 * 359.97438 * 23 22 21 25 25 S 1.75882 * 109.59511 * 0.02562 * 6 4 3 26 26 H 1.09003 * 109.46661 * 90.00822 * 1 2 3 27 27 H 1.09000 * 109.47066 * 210.00179 * 1 2 3 28 28 H 1.09003 * 109.47369 * 330.00684 * 1 2 3 29 29 H 1.08000 * 122.54116 * 359.74496 * 3 2 1 30 30 H 1.09001 * 109.46864 * 85.60044 * 5 4 3 31 31 H 1.08990 * 109.47185 * 205.60511 * 5 4 3 32 32 H 1.09008 * 109.46808 * 325.60649 * 5 4 3 33 33 H 1.09003 * 109.46702 * 214.48162 * 7 6 4 34 34 H 1.08995 * 109.46931 * 334.47289 * 7 6 4 35 35 H 0.96998 * 120.00052 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.04216 * 359.97438 * 20 19 10 37 37 H 1.08001 * 119.96122 * 180.24917 * 21 20 19 38 38 H 1.07999 * 119.91799 * 179.76192 * 22 21 20 39 39 H 1.07999 * 119.96027 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.03983 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0058 5 6 4.6623 1.9482 0.0073 6 6 3.9751 -0.4477 0.0111 7 6 5.3861 -0.9770 0.0175 8 6 5.8127 -1.2528 1.4363 9 8 5.0172 -1.1302 2.3434 10 7 7.0785 -1.6355 1.6969 11 6 7.9323 -1.9295 0.6648 12 1 7.7167 -2.7564 0.0044 13 6 9.0743 -1.1636 0.4688 14 7 9.9566 -1.5196 -0.4378 15 14 9.3561 0.3724 1.4938 16 1 9.9722 -0.0046 2.7914 17 1 10.2632 1.2947 0.7645 18 1 8.0570 1.0482 1.7404 19 6 7.5209 -1.7330 3.0194 20 6 6.7116 -1.2910 4.0589 21 6 7.1500 -1.3928 5.3643 22 6 8.3970 -1.9252 5.6372 23 6 9.2073 -2.3614 4.6047 24 6 8.7733 -2.2670 3.2972 25 16 2.5210 -1.4371 0.0081 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8901 0.5137 29 1 1.8669 2.0894 -0.0041 30 1 4.8475 2.2706 1.0320 31 1 5.5907 1.5838 -0.4323 32 1 4.2895 2.7898 -0.5766 33 1 5.4305 -1.8997 -0.5612 34 1 6.0534 -0.2378 -0.4255 35 1 10.7543 -0.9849 -0.5745 36 1 5.7396 -0.8709 3.8462 37 1 6.5198 -1.0531 6.1730 38 1 8.7389 -2.0001 6.6589 39 1 10.1806 -2.7762 4.8213 40 1 9.4068 -2.6074 2.4914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:05 Heat of formation + Delta-G solvation = 32.831806 kcal Electronic energy + Delta-G solvation = -23901.034290 eV Core-core repulsion = 20579.769519 eV Total energy + Delta-G solvation = -3321.264771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06992 -38.33857 -37.34990 -35.11020 -33.16708 -32.25363 -30.43610 -30.04302 -28.63056 -28.06052 -25.32182 -24.52771 -22.00883 -21.47505 -21.25468 -19.50387 -18.22369 -17.73518 -16.66990 -16.40196 -15.92954 -15.44716 -14.61615 -14.55173 -14.26331 -13.92606 -13.65439 -13.46260 -13.16801 -13.05466 -12.96701 -12.80339 -12.56708 -12.33377 -12.25759 -12.06894 -11.68002 -11.40800 -11.33253 -11.15190 -10.98931 -10.90441 -10.85694 -10.35167 -10.31384 -10.25174 -9.37911 -9.01775 -8.59216 -8.13776 -8.09704 -7.90091 -7.01450 -6.60408 -4.63505 1.28816 1.92636 2.05940 2.19847 2.33263 2.96384 3.07545 3.15799 3.24340 3.51035 4.02713 4.18991 4.58801 4.81632 4.93671 5.17195 5.30564 5.47516 5.50092 5.58206 5.62020 5.64875 5.74336 5.82729 5.88074 5.90204 5.93328 5.96717 6.16362 6.31231 6.33173 6.40656 6.41544 6.56765 6.76646 6.81789 6.88685 7.17525 7.27609 7.30006 7.38536 7.70589 8.00030 8.15518 8.76754 9.00481 9.35279 10.41203 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.004947 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.458828 B = 5659.180576 C = 6476.668012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.194 4.194 3 C -0.129 4.129 4 C -0.107 4.107 5 C -0.095 4.095 6 C -0.142 4.142 7 C -0.053 4.053 8 C 0.504 3.496 9 O -0.547 6.547 10 N -0.413 5.413 11 C -0.370 4.370 12 H 0.106 0.894 13 C 0.091 3.909 14 N -0.854 5.854 15 Si 0.862 3.138 16 H -0.253 1.253 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.158 3.842 20 C -0.180 4.180 21 C -0.111 4.111 22 C -0.169 4.169 23 C -0.110 4.110 24 C -0.142 4.142 25 S 0.102 5.898 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.280 0.720 36 H 0.170 0.830 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 3.785 0.923 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.311 4.311 3 C -0.160 4.160 4 C -0.118 4.118 5 C -0.154 4.154 6 C -0.260 4.260 7 C -0.094 4.094 8 C 0.295 3.705 9 O -0.429 6.429 10 N -0.123 5.123 11 C -0.496 4.496 12 H 0.123 0.877 13 C -0.120 4.120 14 N -0.487 5.487 15 Si 0.686 3.314 16 H -0.178 1.178 17 H -0.208 1.208 18 H -0.186 1.186 19 C 0.062 3.938 20 C -0.200 4.200 21 C -0.130 4.130 22 C -0.189 4.189 23 C -0.129 4.129 24 C -0.163 4.163 25 S 0.368 5.632 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.150 0.850 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.186 0.814 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.519 2.291 1.150 10.827 hybrid contribution 0.921 2.169 0.433 2.396 sum -9.598 4.460 1.584 10.701 Atomic orbital electron populations 1.20256 0.88297 1.02748 1.02205 1.24311 0.99509 0.96180 1.11134 1.19803 0.92319 0.98816 1.05065 1.18683 0.94589 0.94099 1.04474 1.20524 0.97064 0.95625 1.02173 1.23835 0.97830 0.95684 1.08658 1.19933 0.89876 1.03652 0.95934 1.20855 0.82394 0.76714 0.90502 1.90323 1.53041 1.53427 1.46127 1.41384 1.10557 1.56925 1.03456 1.18952 1.04846 1.17553 1.08283 0.87692 1.25523 0.95002 0.96831 0.94616 1.69657 1.09494 1.38247 1.31253 0.86977 0.79859 0.83004 0.81513 1.17752 1.20822 1.18630 1.18641 0.93872 0.95800 0.85526 1.22485 1.03418 1.02740 0.91386 1.20969 0.95791 0.99944 0.96302 1.20901 0.95603 1.04197 0.98173 1.20843 0.99108 1.00439 0.92522 1.21080 0.96419 1.01686 0.97075 1.84058 0.96492 1.09280 1.73332 0.91198 0.91603 0.90972 0.84987 0.91458 0.91321 0.91895 0.87946 0.86765 0.90980 0.81361 0.87098 0.87458 0.86914 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.38 36.01 0.37 -0.41 16 2 C -0.19 -2.71 6.51 -36.00 -0.23 -2.95 16 3 C -0.13 -1.87 9.85 -41.21 -0.41 -2.28 16 4 C -0.11 -1.76 5.80 -106.25 -0.62 -2.37 16 5 C -0.09 -1.42 9.92 36.00 0.36 -1.06 16 6 C -0.14 -2.53 5.00 -36.00 -0.18 -2.71 16 7 C -0.05 -1.01 4.75 -29.04 -0.14 -1.15 16 8 C 0.50 11.29 7.50 -10.98 -0.08 11.21 16 9 O -0.55 -12.82 12.59 5.56 0.07 -12.75 16 10 N -0.41 -9.79 1.99 -58.98 -0.12 -9.91 16 11 C -0.37 -9.12 7.56 -14.94 -0.11 -9.24 16 12 H 0.11 2.73 8.06 -52.49 -0.42 2.30 16 13 C 0.09 2.28 4.51 -17.49 -0.08 2.20 16 14 N -0.85 -22.16 13.96 55.49 0.77 -21.39 16 15 Si 0.86 20.12 25.54 -169.99 -4.34 15.78 16 16 H -0.25 -5.95 6.50 56.52 0.37 -5.58 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.16 3.68 4.75 -83.69 -0.40 3.28 16 20 C -0.18 -3.99 8.96 -39.37 -0.35 -4.34 16 21 C -0.11 -2.13 10.04 -39.61 -0.40 -2.53 16 22 C -0.17 -3.07 10.04 -39.53 -0.40 -3.47 16 23 C -0.11 -2.14 10.04 -39.61 -0.40 -2.53 16 24 C -0.14 -3.17 6.93 -39.37 -0.27 -3.44 16 25 S 0.10 1.62 23.31 -107.50 -2.51 -0.88 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.06 6.39 -51.93 -0.33 0.73 16 32 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.10 1.88 8.13 -51.93 -0.42 1.46 16 34 H 0.11 2.18 6.37 -51.93 -0.33 1.84 16 35 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.17 3.88 4.76 -54.92 -0.26 3.62 16 37 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.14 3.21 6.33 -52.48 -0.33 2.88 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -27.83 341.95 -9.38 -37.21 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.08 Total: 8.57 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -3.33 Total: -21.78 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.66 Total: -31.30 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.34 Total: 15.78 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.51 Total: -0.88 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.83 -9.38 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.041 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds