Wall clock time and date at job start Tue Mar 31 2020 11:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35705 * 117.00020 * 2 1 4 4 C 1.39104 * 119.89161 * 0.02562 * 3 2 1 5 5 C 1.37598 * 120.16845 * 179.74031 * 4 3 2 6 6 C 1.39837 * 119.92563 * 0.51753 * 5 4 3 7 7 C 1.47405 * 120.11156 * 179.73836 * 6 5 4 8 8 O 1.21607 * 120.00217 * 179.72890 * 7 6 5 9 9 N 1.34782 * 119.99774 * 359.72380 * 7 6 5 10 10 C 1.39134 * 119.99871 * 185.21399 * 9 7 6 11 11 C 1.39502 * 119.83695 * 33.28901 * 10 9 7 12 12 C 1.36363 * 120.16661 * 180.25484 * 11 10 9 13 13 C 1.40875 * 119.82696 * 359.50180 * 12 11 10 14 14 C 1.41148 * 120.16080 * 180.22985 * 13 12 11 15 15 H 1.07994 * 119.99896 * 205.19303 * 14 13 12 16 16 C 1.39908 * 119.99514 * 25.18726 * 14 13 12 17 17 N 1.30870 * 120.00242 * 17.47986 * 16 14 13 18 18 Si 1.86800 * 119.99544 * 197.47838 * 16 14 13 19 19 H 1.48496 * 109.47232 * 94.68264 * 18 16 14 20 20 H 1.48496 * 109.46941 * 214.68492 * 18 16 14 21 21 H 1.48497 * 109.47151 * 334.68112 * 18 16 14 22 22 C 1.40873 * 119.67866 * 0.52100 * 13 12 11 23 23 C 1.36360 * 119.83195 * 359.72902 * 22 13 12 24 24 C 1.40010 * 119.78088 * 359.46577 * 6 5 4 25 25 F 1.35094 * 120.08635 * 180.29658 * 24 6 5 26 26 C 1.38058 * 119.83451 * 0.27436 * 24 6 5 27 27 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47133 * 300.00161 * 1 2 3 29 29 H 1.09004 * 109.46821 * 60.00178 * 1 2 3 30 30 H 1.08006 * 119.91462 * 0.02594 * 4 3 2 31 31 H 1.07993 * 120.03828 * 180.25682 * 5 4 3 32 32 H 0.96994 * 120.00095 * 5.21153 * 9 7 6 33 33 H 1.07997 * 119.92081 * 359.97438 * 11 10 9 34 34 H 1.07999 * 120.08600 * 179.73054 * 12 11 10 35 35 H 0.96996 * 119.99782 * 179.97438 * 17 16 14 36 36 H 1.08007 * 120.08278 * 179.70860 * 22 13 12 37 37 H 1.08000 * 119.91810 * 179.97438 * 23 22 13 38 38 H 1.07994 * 119.96551 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2853 2.3743 0.0005 5 6 1.9041 3.6033 0.0059 6 6 3.3002 3.6815 -0.0001 7 6 3.9673 4.9960 -0.0001 8 8 5.1816 5.0616 -0.0004 9 7 3.2314 6.1251 -0.0001 10 6 3.8568 7.3631 -0.1096 11 6 5.0185 7.4888 -0.8718 12 6 5.6399 8.6979 -0.9795 13 6 5.0999 9.8238 -0.3273 14 6 5.7346 11.0796 -0.4381 15 1 5.5997 11.8228 0.3338 16 6 6.5387 11.3615 -1.5478 17 7 6.4409 10.6310 -2.6292 18 14 7.7517 12.7807 -1.4857 19 1 9.0879 12.2726 -1.0835 20 1 7.8450 13.4111 -2.8270 21 1 7.2866 13.7866 -0.4973 22 6 3.9268 9.6889 0.4410 23 6 3.3194 8.4724 0.5437 24 6 4.0625 2.5071 -0.0002 25 9 5.4117 2.5754 0.0001 26 6 3.4318 1.2789 -0.0002 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2069 2.3142 0.0014 31 1 1.3121 4.5066 0.0105 32 1 2.2658 6.0747 0.0764 33 1 5.4293 6.6255 -1.3741 34 1 6.5415 8.7928 -1.5664 35 1 6.9981 10.8268 -3.3987 36 1 3.5099 10.5468 0.9476 37 1 2.4202 8.3674 1.1327 38 1 4.0177 0.3717 -0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:30 Heat of formation + Delta-G solvation = -64.005633 kcal Electronic energy + Delta-G solvation = -24561.237849 eV Core-core repulsion = 20669.560715 eV Total energy + Delta-G solvation = -3891.677134 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.87057 -40.57488 -39.57911 -37.61202 -36.82158 -34.49629 -33.04339 -31.45359 -30.44843 -29.47884 -28.90081 -27.78639 -25.14716 -23.72540 -22.75632 -21.47182 -21.01394 -19.67561 -18.87641 -17.61568 -17.31308 -17.21398 -16.31320 -16.29257 -15.86165 -15.55642 -15.26141 -14.97451 -14.86689 -14.36987 -13.96056 -13.84394 -13.14617 -13.06507 -12.82124 -12.69349 -12.64626 -12.45698 -12.02707 -11.83466 -11.47451 -11.37175 -11.26122 -11.11820 -11.06925 -10.67418 -9.92552 -9.66921 -9.45209 -9.20090 -9.08288 -8.90019 -8.60804 -7.52247 -6.99224 -6.73316 -4.29330 0.61334 0.87160 2.58521 2.68780 2.93182 3.08449 3.10143 3.12419 3.21622 3.62816 3.79712 3.93972 4.11867 4.30144 4.53762 4.63861 4.67471 4.71441 4.83165 4.93465 5.05150 5.07444 5.55578 5.68420 5.72520 5.83219 5.87822 6.13749 6.32012 6.39774 6.78670 6.86901 6.98603 7.04492 7.15102 7.28739 7.59215 7.67260 7.95545 8.05978 8.19884 8.30805 8.62718 8.74665 8.88472 9.00367 10.18240 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.032666 B = 0.002570 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.956166 B =10893.430928 C =11419.016258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.175 3.825 4 C -0.228 4.228 5 C -0.019 4.019 6 C -0.199 4.199 7 C 0.541 3.459 8 O -0.516 6.516 9 N -0.643 5.643 10 C -0.007 4.007 11 C -0.084 4.084 12 C -0.155 4.155 13 C 0.106 3.894 14 C -0.457 4.457 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.790 5.790 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.216 4.216 23 C -0.103 4.103 24 C 0.199 3.801 25 F -0.106 7.106 26 C -0.202 4.202 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.392 0.608 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.281 0.719 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 -16.989 2.985 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.129 3.871 4 C -0.247 4.247 5 C -0.038 4.038 6 C -0.203 4.203 7 C 0.328 3.672 8 O -0.393 6.393 9 N -0.286 5.286 10 C -0.099 4.099 11 C -0.104 4.104 12 C -0.174 4.174 13 C 0.103 3.897 14 C -0.486 4.486 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.415 5.415 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.236 4.236 23 C -0.123 4.123 24 C 0.178 3.822 25 F -0.084 7.084 26 C -0.222 4.222 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.226 0.774 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.609 -17.155 2.719 20.891 hybrid contribution -0.079 0.695 -0.059 0.702 sum -11.688 -16.460 2.660 20.362 Atomic orbital electron populations 1.23171 0.77591 1.04406 1.01880 1.86044 1.22017 1.26494 1.87752 1.18785 0.91334 0.84466 0.92532 1.21187 1.00648 0.91706 1.11113 1.20999 0.92350 0.97951 0.92516 1.20148 0.94098 0.93547 1.12525 1.17826 0.87231 0.83369 0.78748 1.90850 1.12973 1.86783 1.48676 1.42815 1.09189 1.04884 1.71723 1.17124 1.00886 0.83400 1.08489 1.20439 0.95109 0.97468 0.97400 1.20980 1.01213 0.90861 1.04393 1.17678 0.89420 0.93056 0.89525 1.19571 1.24416 0.99653 1.04982 0.90311 1.25943 0.96367 0.97630 0.94471 1.69845 1.32840 1.36477 1.02305 0.86282 0.80888 0.80976 0.78479 1.19282 1.20294 1.18563 1.20532 0.98533 0.95687 1.08823 1.20012 0.99683 0.93080 0.99532 1.17238 0.77649 0.92070 0.95211 1.91630 1.27493 1.96959 1.92319 1.20186 0.92481 0.97575 1.11952 0.87870 0.92143 0.92113 0.84240 0.84220 0.77396 0.87950 0.86212 0.90790 0.88575 0.89177 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.69 10.48 -18.82 -0.20 -2.89 16 3 C 0.18 1.75 6.69 -39.03 -0.26 1.49 16 4 C -0.23 -1.99 9.01 -39.49 -0.36 -2.34 16 5 C -0.02 -0.20 9.53 -39.22 -0.37 -0.58 16 6 C -0.20 -2.91 5.88 -104.90 -0.62 -3.53 16 7 C 0.54 10.28 7.48 -12.53 -0.09 10.18 16 8 O -0.52 -12.09 12.97 5.27 0.07 -12.02 16 9 N -0.64 -11.66 5.25 -10.72 -0.06 -11.72 16 10 C -0.01 -0.15 6.29 -83.60 -0.53 -0.68 16 11 C -0.08 -2.15 8.57 -39.79 -0.34 -2.49 16 12 C -0.15 -4.21 8.63 -39.26 -0.34 -4.55 16 13 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 14 C -0.46 -12.18 9.04 -37.85 -0.34 -12.52 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 17 N -0.79 -20.68 10.97 55.55 0.61 -20.07 16 18 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.22 -5.25 9.74 -39.26 -0.38 -5.63 16 23 C -0.10 -2.27 9.89 -39.78 -0.39 -2.66 16 24 C 0.20 2.89 7.28 -38.98 -0.28 2.61 16 25 F -0.11 -1.82 15.54 2.25 0.03 -1.79 16 26 C -0.20 -2.33 9.95 -39.42 -0.39 -2.72 16 27 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 29 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 30 H 0.14 0.78 6.27 -52.48 -0.33 0.45 16 31 H 0.14 1.11 6.41 -52.49 -0.34 0.77 16 32 H 0.39 5.37 6.84 -40.82 -0.28 5.09 16 33 H 0.10 2.64 6.38 -52.49 -0.33 2.31 16 34 H 0.12 3.38 6.19 -52.49 -0.32 3.05 16 35 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 36 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -32.45 330.52 -7.62 -40.07 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.64 Total: 7.87 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -4.39 Total: -18.25 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.55 Total: -31.79 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.13 Total: -14.91 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.79 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.45 -7.62 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.936 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds