Wall clock time and date at job start Tue Mar 31 2020 11:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99580 * 2 1 4 4 C 1.50702 * 109.47385 * 273.89172 * 3 2 1 5 5 C 1.36126 * 120.17233 * 4.72769 * 4 3 2 6 6 C 1.39334 * 120.99258 * 179.77139 * 5 4 3 7 7 C 1.36126 * 120.98354 * 0.48203 * 6 5 4 8 8 C 1.40502 * 119.65233 * 359.77897 * 7 6 5 9 9 C 1.40553 * 121.27693 * 180.02562 * 8 7 6 10 10 C 1.36096 * 119.65043 * 179.97438 * 9 8 7 11 11 C 1.39379 * 120.98951 * 0.02664 * 10 9 8 12 12 C 1.36091 * 120.99674 * 359.95212 * 11 10 9 13 13 C 1.40503 * 120.17231 * 185.00128 * 4 3 2 14 14 C 1.34778 * 120.00353 * 179.73077 * 2 1 3 15 15 O 1.21272 * 120.00000 * 179.97438 * 14 2 1 16 16 C 1.50696 * 119.99705 * 359.97438 * 14 2 1 17 17 S 1.81004 * 109.47067 * 179.97438 * 16 14 2 18 18 C 1.76202 * 99.99896 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00209 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99831 * 180.02562 * 18 17 16 21 21 N 1.31636 * 120.00179 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99954 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47297 * 59.99907 * 22 20 18 24 24 H 1.48502 * 109.47221 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47113 * 299.99870 * 22 20 18 26 26 H 1.08999 * 109.46696 * 264.85674 * 1 2 3 27 27 H 1.08995 * 109.47284 * 24.85549 * 1 2 3 28 28 H 1.08994 * 109.46949 * 144.86127 * 1 2 3 29 29 H 1.09001 * 109.47209 * 33.89611 * 3 2 1 30 30 H 1.09008 * 109.47046 * 153.89303 * 3 2 1 31 31 H 1.07997 * 119.50161 * 359.97438 * 5 4 3 32 32 H 1.07992 * 119.50678 * 180.23822 * 6 5 4 33 33 H 1.07998 * 120.17345 * 179.75692 * 7 6 5 34 34 H 1.07992 * 120.17448 * 359.96029 * 9 8 7 35 35 H 1.07995 * 119.50127 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.50371 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.17430 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.47492 * 299.99854 * 16 14 2 39 39 H 1.09009 * 109.47190 * 59.99869 * 16 14 2 40 40 H 0.96999 * 119.99790 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3651 1.7521 -1.4175 5 6 1.7816 1.0755 -2.4446 6 6 1.9215 1.5099 -3.7611 7 6 2.6538 2.6179 -4.0594 8 6 3.2754 3.3392 -3.0262 9 6 4.0389 4.4882 -3.2954 10 6 4.6261 5.1620 -2.2690 11 6 4.4828 4.7299 -0.9517 12 6 3.7508 3.6221 -0.6532 13 6 3.1292 2.9001 -1.6865 14 6 2.1390 -1.1672 0.0055 15 8 3.3517 -1.1671 0.0050 16 6 1.3855 -2.4722 0.0122 17 16 2.5618 -3.8480 0.0178 18 6 1.4417 -5.2081 0.0242 19 1 0.3764 -5.0304 0.0243 20 6 1.9284 -6.5079 0.0303 21 7 3.2269 -6.7245 0.0307 22 14 0.7410 -7.9499 0.0379 23 1 -0.1147 -7.8929 -1.1744 24 1 1.5071 -9.2220 0.0443 25 1 -0.1134 -7.8812 1.2505 26 1 -0.3633 -0.0921 1.0235 27 1 -0.3633 0.9324 -0.4319 28 1 -0.3633 -0.8403 -0.5915 29 1 1.6403 2.0099 0.5731 30 1 3.1784 1.1221 0.4523 31 1 1.1988 0.1907 -2.2355 32 1 1.4451 0.9570 -4.5571 33 1 2.7568 2.9406 -5.0849 34 1 4.1591 4.8344 -4.3112 35 1 5.2118 6.0448 -2.4785 36 1 4.9596 5.2826 -0.1558 37 1 3.6482 3.2993 0.3723 38 1 0.7592 -2.5257 0.9027 39 1 0.7584 -2.5343 -0.8773 40 1 3.5670 -7.6329 0.0345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041813626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:40 Heat of formation + Delta-G solvation = -6.251542 kcal Electronic energy + Delta-G solvation = -22699.632832 eV Core-core repulsion = 19376.673280 eV Total energy + Delta-G solvation = -3322.959552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65455 -40.60825 -37.68239 -36.51874 -34.58570 -34.17523 -31.49051 -31.19774 -30.02003 -28.26108 -27.69500 -26.48594 -24.17224 -23.87903 -22.10191 -20.54644 -19.54570 -18.47233 -18.05136 -18.01061 -17.35636 -16.88515 -16.82033 -16.58869 -15.81995 -15.28868 -15.12458 -15.01761 -14.57368 -14.51303 -14.45116 -14.16181 -13.96131 -13.60525 -13.52622 -13.35394 -13.17686 -13.06887 -12.86761 -12.74878 -12.62316 -12.15161 -11.85554 -11.74522 -11.72900 -11.12887 -10.94060 -10.70466 -10.27352 -9.81131 -9.53126 -8.75236 -8.67988 -8.34489 -6.13184 -0.39095 0.09251 1.11317 1.24795 1.43867 1.45279 1.54696 1.55497 2.07817 2.09922 2.27505 2.99512 3.16493 3.26168 3.60490 3.72216 3.88130 3.95210 4.04971 4.14819 4.20009 4.30067 4.30495 4.35707 4.42600 4.46871 4.50311 4.55539 4.64488 4.73051 4.86818 4.91266 5.01535 5.19767 5.31364 5.35600 5.41008 5.41230 5.54871 5.64350 5.76405 5.92145 6.12220 6.19135 6.22359 7.06430 7.11530 8.74555 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.025778 B = 0.002742 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.946153 B =10210.703123 C =10309.119298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.608 5.608 3 C 0.157 3.843 4 C -0.097 4.097 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.114 4.114 8 C -0.073 4.073 9 C -0.113 4.113 10 C -0.121 4.121 11 C -0.118 4.118 12 C -0.124 4.124 13 C -0.064 4.064 14 C 0.532 3.468 15 O -0.562 6.562 16 C -0.123 4.123 17 S -0.154 6.154 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.261 1.261 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 25.569 -4.623 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C 0.035 3.965 4 C -0.099 4.099 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.132 4.132 8 C -0.073 4.073 9 C -0.131 4.131 10 C -0.139 4.139 11 C -0.135 4.135 12 C -0.142 4.142 13 C -0.065 4.065 14 C 0.320 3.680 15 O -0.440 6.440 16 C -0.274 4.274 17 S 0.073 5.927 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.135 0.865 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.575 25.461 -4.606 26.276 hybrid contribution -1.624 -1.278 -0.004 2.067 sum -6.199 24.183 -4.610 25.387 Atomic orbital electron populations 1.22136 0.76677 1.04712 1.03649 1.47762 1.08513 1.04339 1.73515 1.20383 0.98385 0.84618 0.93151 1.20210 0.97875 0.95208 0.96564 1.20868 1.00542 0.99636 0.93069 1.21096 0.99452 0.97192 0.96518 1.21316 0.97048 0.95380 0.99443 1.18417 0.99148 0.96954 0.92739 1.21334 0.96799 0.94042 1.00936 1.21235 0.99483 1.00697 0.92476 1.21216 0.98119 0.96401 0.97797 1.21263 0.98074 0.95986 0.98857 1.18086 0.98760 0.95582 0.94046 1.20169 0.87273 0.85470 0.75117 1.90686 1.15778 1.87408 1.50142 1.23370 1.02684 0.94831 1.06484 1.85629 1.12699 0.97352 1.97035 1.23155 0.94611 0.92573 1.58924 0.89831 1.26144 0.97596 1.01722 0.93730 1.70187 1.14170 1.22516 1.47984 0.85001 0.77593 0.75835 0.79552 1.18596 1.20465 1.18563 0.90523 0.88488 0.90548 0.85919 0.90219 0.86490 0.84472 0.83224 0.83382 0.83262 0.83584 0.84649 0.87247 0.87403 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.06 127.77 1.16 2.40 16 2 N -0.61 -16.40 1.72 -851.14 -1.46 -17.87 16 3 C 0.16 3.85 4.55 85.63 0.39 4.24 16 4 C -0.10 -2.55 5.88 -19.80 -0.12 -2.66 16 5 C -0.12 -3.26 9.11 22.04 0.20 -3.06 16 6 C -0.12 -2.90 9.95 22.04 0.22 -2.68 16 7 C -0.11 -2.42 9.77 22.33 0.22 -2.20 16 8 C -0.07 -1.66 5.74 -21.30 -0.12 -1.78 16 9 C -0.11 -1.99 9.77 22.34 0.22 -1.78 16 10 C -0.12 -1.87 9.95 22.05 0.22 -1.65 16 11 C -0.12 -1.97 9.95 22.04 0.22 -1.75 16 12 C -0.12 -2.57 9.37 22.33 0.21 -2.36 16 13 C -0.06 -1.59 5.74 -21.30 -0.12 -1.72 16 14 C 0.53 20.38 7.57 87.66 0.66 21.04 16 15 O -0.56 -27.05 15.38 -3.00 -0.05 -27.10 16 16 C -0.12 -4.94 4.78 71.23 0.34 -4.60 16 17 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 18 C -0.54 -31.21 9.50 67.95 0.65 -30.56 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 22 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 28 H 0.08 1.36 6.67 -2.39 -0.02 1.34 16 29 H 0.12 2.09 8.10 -2.39 -0.02 2.07 16 30 H 0.08 2.32 7.02 -2.38 -0.02 2.31 16 31 H 0.12 3.14 6.03 -2.91 -0.02 3.13 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.14 2.40 6.98 -2.91 -0.02 2.38 16 38 H 0.11 3.96 8.11 -2.39 -0.02 3.94 16 39 H 0.11 3.92 7.41 -2.39 -0.02 3.90 16 40 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -79.96 350.84 5.49 -74.47 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.04 Total: 18.86 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.81 Total: -27.93 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.18 Total: -74.09 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.05 Total: -27.10 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -79.96 5.49 -74.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041813626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.215 kcal (2) G-P(sol) polarization free energy of solvation -79.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds