Wall clock time and date at job start Tue Mar 31 2020 10:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47600 * 2 1 4 4 C 1.52998 * 109.47229 * 239.99423 * 2 1 3 5 5 C 1.50701 * 109.47275 * 175.00271 * 4 2 1 6 6 C 1.33389 * 125.20010 * 89.71504 * 5 4 2 7 7 C 1.38424 * 114.91618 * 179.86034 * 6 5 4 8 8 C 1.33388 * 114.92461 * 0.43425 * 7 6 5 9 9 S 1.75885 * 125.20321 * 270.02670 * 5 4 2 10 10 N 1.46504 * 109.46915 * 119.99374 * 2 1 3 11 11 C 1.34771 * 120.00175 * 274.99957 * 10 2 1 12 12 O 1.21548 * 120.00019 * 0.02562 * 11 10 2 13 13 C 1.47891 * 119.99994 * 179.97438 * 11 10 2 14 14 C 1.39919 * 120.02101 * 359.72679 * 13 11 10 15 15 C 1.38339 * 120.35274 * 179.71986 * 14 13 11 16 16 C 1.37746 * 120.40968 * 0.55421 * 15 14 13 17 17 C 1.40750 * 120.04209 * 359.72496 * 16 15 14 18 18 C 1.41442 * 120.17435 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99450 * 150.18253 * 18 17 16 20 20 C 1.39933 * 120.00262 * 330.18411 * 18 17 16 21 21 N 1.30829 * 119.99992 * 161.72951 * 20 18 17 22 22 Si 1.86798 * 120.00023 * 341.72538 * 20 18 17 23 23 H 1.48500 * 109.47121 * 95.41918 * 22 20 18 24 24 H 1.48503 * 109.47000 * 215.41511 * 22 20 18 25 25 H 1.48499 * 109.47353 * 335.41556 * 22 20 18 26 26 C 1.38995 * 120.02372 * 180.02562 * 13 11 10 27 27 H 1.08994 * 109.47459 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46850 * 300.00783 * 1 2 3 29 29 H 1.09002 * 109.46862 * 60.00124 * 1 2 3 30 30 H 1.09003 * 109.46953 * 295.00037 * 4 2 1 31 31 H 1.09000 * 109.46990 * 55.00310 * 4 2 1 32 32 H 1.08002 * 122.54105 * 0.02771 * 6 5 4 33 33 H 1.08001 * 122.53636 * 180.20674 * 7 6 5 34 34 H 1.08001 * 125.20787 * 179.79389 * 8 7 6 35 35 H 0.97007 * 119.99970 * 95.27169 * 10 2 1 36 36 H 1.07994 * 119.82556 * 359.97179 * 14 13 11 37 37 H 1.08001 * 119.78992 * 180.25925 * 15 14 13 38 38 H 1.08009 * 119.97969 * 179.74441 * 16 15 14 39 39 H 0.96993 * 120.00091 * 179.97438 * 21 20 18 40 40 H 1.07998 * 120.20113 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5420 -0.6151 -1.3126 6 6 4.3978 -1.4825 -0.7700 7 6 5.7349 -1.1791 -0.9603 8 6 5.9649 -0.0606 -1.6496 9 16 4.4344 0.6757 -2.1069 10 7 2.0183 -0.6905 1.1963 11 6 2.1470 -0.0181 2.3572 12 8 1.8575 1.1612 2.4118 13 6 2.6394 -0.7153 3.5649 14 6 2.9663 -2.0744 3.5042 15 6 3.4330 -2.7320 4.6283 16 6 3.5705 -2.0597 5.8226 17 6 3.2410 -0.6937 5.9043 18 6 3.3816 -0.0005 7.1291 19 1 3.6055 1.0560 7.1289 20 6 3.2306 -0.6835 8.3411 21 7 3.6981 -0.1643 9.4472 22 14 2.3616 -2.3366 8.3796 23 1 3.3678 -3.4265 8.3086 24 1 1.5870 -2.4593 9.6406 25 1 1.4393 -2.4381 7.2202 26 6 2.7718 -0.0224 4.7625 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.7517 -1.7716 -1.2054 31 1 1.6055 -0.2619 -2.1369 32 1 4.0721 -2.3567 -0.2258 33 1 6.5315 -1.7991 -0.5764 34 1 6.9415 0.3326 -1.8906 35 1 2.2528 -1.6308 1.1519 36 1 2.8576 -2.6120 2.5739 37 1 3.6866 -3.7802 4.5702 38 1 3.9316 -2.5809 6.6970 39 1 3.5931 -0.6375 10.2873 40 1 2.5165 1.0256 4.8149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078870966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:01 Heat of formation + Delta-G solvation = 3.687739 kcal Electronic energy + Delta-G solvation = -23028.455292 eV Core-core repulsion = 19705.926739 eV Total energy + Delta-G solvation = -3322.528553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.68159 -38.13168 -37.33034 -35.71937 -33.71691 -32.13601 -30.64843 -30.11973 -29.50758 -26.49194 -25.24910 -23.72901 -23.01205 -21.18853 -20.61785 -20.13724 -19.22859 -17.92875 -17.22773 -16.33830 -16.12742 -15.55856 -15.46290 -14.68895 -14.54342 -13.95503 -13.82268 -13.57887 -13.49157 -13.18306 -12.77399 -12.75132 -12.69100 -12.58315 -12.21824 -12.04294 -11.70568 -11.68370 -11.59368 -11.11430 -11.03536 -10.83717 -10.77448 -10.53335 -10.01092 -9.72194 -9.41323 -9.13132 -8.87792 -8.69325 -8.52713 -7.86603 -7.75673 -7.00756 -4.55490 0.91290 1.54249 1.90562 1.93221 2.51525 2.69063 3.04858 3.16959 3.25406 3.50221 3.64564 3.92804 4.47348 4.52431 4.73791 4.96158 5.02165 5.19218 5.32128 5.32728 5.44189 5.49843 5.53530 5.56974 5.67660 5.84164 5.99466 6.02130 6.05463 6.17648 6.23556 6.39035 6.40729 6.66296 6.67464 6.77000 6.98282 7.21373 7.40893 7.49734 7.75266 7.81549 8.02920 8.28185 8.53315 8.70061 8.75655 10.01532 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.019467 B = 0.003320 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.997936 B = 8430.677101 C = 8870.832528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.088 0.912 4 C -0.057 4.057 5 C -0.170 4.170 6 C -0.133 4.133 7 C -0.129 4.129 8 C -0.217 4.217 9 S 0.090 5.910 10 N -0.725 5.725 11 C 0.566 3.434 12 O -0.548 6.548 13 C -0.107 4.107 14 C -0.215 4.215 15 C -0.083 4.083 16 C -0.222 4.222 17 C 0.082 3.918 18 C -0.443 4.443 19 H 0.093 0.907 20 C 0.084 3.916 21 N -0.804 5.804 22 Si 0.911 3.089 23 H -0.270 1.270 24 H -0.289 1.289 25 H -0.244 1.244 26 C -0.136 4.136 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.398 0.602 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.286 0.714 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 -4.969 -20.318 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.106 0.894 4 C -0.096 4.096 5 C -0.287 4.287 6 C -0.163 4.163 7 C -0.159 4.159 8 C -0.352 4.352 9 S 0.353 5.647 10 N -0.379 5.379 11 C 0.356 3.644 12 O -0.426 6.426 13 C -0.110 4.110 14 C -0.235 4.235 15 C -0.102 4.102 16 C -0.242 4.242 17 C 0.079 3.921 18 C -0.471 4.471 19 H 0.111 0.889 20 C -0.136 4.136 21 N -0.428 5.428 22 Si 0.737 3.263 23 H -0.196 1.196 24 H -0.217 1.217 25 H -0.167 1.167 26 C -0.157 4.157 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.179 0.821 35 H 0.233 0.767 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.443 -2.748 -20.804 21.035 hybrid contribution 0.426 -2.460 1.055 2.710 sum -1.017 -5.208 -19.750 20.450 Atomic orbital electron populations 1.22189 0.95012 1.02223 1.02729 1.20866 0.93812 0.97645 0.83547 0.89382 1.20506 0.88231 1.02450 0.98452 1.24383 0.99282 0.99252 1.05823 1.20095 0.92374 1.01484 1.02320 1.20185 0.97152 0.97852 1.00755 1.25561 1.01109 1.00803 1.07726 1.84204 0.97815 1.27286 1.55428 1.45957 1.68561 1.14052 1.09289 1.18750 0.76214 0.86252 0.83203 1.90691 1.50614 1.16063 1.85256 1.19438 1.04435 0.94347 0.92782 1.20355 1.11877 0.93592 0.97687 1.20503 0.98644 0.97821 0.93195 1.21167 1.09650 0.96264 0.97078 1.17694 0.89521 0.91487 0.93352 1.19524 1.40594 0.98526 0.88478 0.88868 1.26163 0.92977 0.99413 0.95014 1.69692 1.33362 1.39349 1.00374 0.86312 0.80680 0.80919 0.78376 1.19563 1.21663 1.16698 1.21275 1.02919 0.99750 0.91707 0.92373 0.91492 0.91859 0.89400 0.89322 0.84470 0.84307 0.82094 0.76655 0.88759 0.88358 0.87937 0.90326 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.15 1.78 2.56 -67.93 -0.17 1.60 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 4 C -0.06 -0.52 5.25 -27.88 -0.15 -0.66 16 5 C -0.17 -1.83 5.53 -36.00 -0.20 -2.03 16 6 C -0.13 -1.46 9.81 -41.21 -0.40 -1.86 16 7 C -0.13 -1.40 10.18 -41.21 -0.42 -1.82 16 8 C -0.22 -2.27 11.23 29.04 0.33 -1.94 16 9 S 0.09 0.95 23.33 -107.50 -2.51 -1.56 16 10 N -0.73 -10.45 4.60 -54.73 -0.25 -10.71 16 11 C 0.57 11.02 7.74 -12.31 -0.10 10.93 16 12 O -0.55 -12.33 16.00 5.32 0.09 -12.25 16 13 C -0.11 -2.28 5.87 -105.04 -0.62 -2.89 16 14 C -0.22 -4.11 9.55 -38.92 -0.37 -4.48 16 15 C -0.08 -1.69 10.01 -39.72 -0.40 -2.08 16 16 C -0.22 -5.17 7.17 -38.81 -0.28 -5.45 16 17 C 0.08 2.08 5.10 -106.87 -0.55 1.54 16 18 C -0.44 -11.97 9.57 -37.73 -0.36 -12.33 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.08 2.17 5.40 -17.34 -0.09 2.08 16 21 N -0.80 -21.24 13.93 55.55 0.77 -20.47 16 22 Si 0.91 20.36 24.52 -169.99 -4.17 16.20 16 23 H -0.27 -5.78 6.71 56.52 0.38 -5.40 16 24 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 26 C -0.14 -3.30 9.34 -38.44 -0.36 -3.66 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.14 1.33 8.04 -52.49 -0.42 0.91 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.40 4.93 6.53 -40.82 -0.27 4.66 16 36 H 0.09 1.43 6.38 -52.49 -0.33 1.10 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 2.37 4.72 -52.48 -0.25 2.12 16 39 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 40 H 0.11 2.85 7.64 -52.49 -0.40 2.45 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -29.73 348.94 -9.63 -39.36 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.04 Total: 8.65 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -3.78 Total: -24.49 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.52 Total: -31.18 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.17 Total: 16.20 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.73 -9.63 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078870966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.051 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds