Wall clock time and date at job start Tue Mar 31 2020 10:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47600 * 2 1 4 4 C 1.52998 * 109.47229 * 239.99423 * 2 1 3 5 5 C 1.50701 * 109.47275 * 175.00271 * 4 2 1 6 6 C 1.33389 * 125.20010 * 89.71504 * 5 4 2 7 7 C 1.38424 * 114.91618 * 179.86034 * 6 5 4 8 8 C 1.33388 * 114.92461 * 0.43425 * 7 6 5 9 9 S 1.75885 * 125.20321 * 270.02670 * 5 4 2 10 10 N 1.46504 * 109.46915 * 119.99374 * 2 1 3 11 11 C 1.34771 * 120.00175 * 274.99957 * 10 2 1 12 12 O 1.21548 * 120.00019 * 0.02562 * 11 10 2 13 13 C 1.47891 * 119.99994 * 179.97438 * 11 10 2 14 14 C 1.39919 * 120.02101 * 359.72679 * 13 11 10 15 15 C 1.38339 * 120.35274 * 179.71986 * 14 13 11 16 16 C 1.37746 * 120.40968 * 0.55421 * 15 14 13 17 17 C 1.40750 * 120.04209 * 359.72496 * 16 15 14 18 18 C 1.41442 * 120.17435 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99450 * 150.18253 * 18 17 16 20 20 C 1.39933 * 120.00262 * 330.18411 * 18 17 16 21 21 N 1.30829 * 119.99992 * 161.72951 * 20 18 17 22 22 Si 1.86798 * 120.00023 * 341.72538 * 20 18 17 23 23 H 1.48500 * 109.47121 * 95.41918 * 22 20 18 24 24 H 1.48503 * 109.47000 * 215.41511 * 22 20 18 25 25 H 1.48499 * 109.47353 * 335.41556 * 22 20 18 26 26 C 1.38995 * 120.02372 * 180.02562 * 13 11 10 27 27 H 1.08994 * 109.47459 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46850 * 300.00783 * 1 2 3 29 29 H 1.09002 * 109.46862 * 60.00124 * 1 2 3 30 30 H 1.09003 * 109.46953 * 295.00037 * 4 2 1 31 31 H 1.09000 * 109.46990 * 55.00310 * 4 2 1 32 32 H 1.08002 * 122.54105 * 0.02771 * 6 5 4 33 33 H 1.08001 * 122.53636 * 180.20674 * 7 6 5 34 34 H 1.08001 * 125.20787 * 179.79389 * 8 7 6 35 35 H 0.97007 * 119.99970 * 95.27169 * 10 2 1 36 36 H 1.07994 * 119.82556 * 359.97179 * 14 13 11 37 37 H 1.08001 * 119.78992 * 180.25925 * 15 14 13 38 38 H 1.08009 * 119.97969 * 179.74441 * 16 15 14 39 39 H 0.96993 * 120.00091 * 179.97438 * 21 20 18 40 40 H 1.07998 * 120.20113 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5420 -0.6151 -1.3126 6 6 4.3978 -1.4825 -0.7700 7 6 5.7349 -1.1791 -0.9603 8 6 5.9649 -0.0606 -1.6496 9 16 4.4344 0.6757 -2.1069 10 7 2.0183 -0.6905 1.1963 11 6 2.1470 -0.0181 2.3572 12 8 1.8575 1.1612 2.4118 13 6 2.6394 -0.7153 3.5649 14 6 2.9663 -2.0744 3.5042 15 6 3.4330 -2.7320 4.6283 16 6 3.5705 -2.0597 5.8226 17 6 3.2410 -0.6937 5.9043 18 6 3.3816 -0.0005 7.1291 19 1 3.6055 1.0560 7.1289 20 6 3.2306 -0.6835 8.3411 21 7 3.6981 -0.1643 9.4472 22 14 2.3616 -2.3366 8.3796 23 1 3.3678 -3.4265 8.3086 24 1 1.5870 -2.4593 9.6406 25 1 1.4393 -2.4381 7.2202 26 6 2.7718 -0.0224 4.7625 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.7517 -1.7716 -1.2054 31 1 1.6055 -0.2619 -2.1369 32 1 4.0721 -2.3567 -0.2258 33 1 6.5315 -1.7991 -0.5764 34 1 6.9415 0.3326 -1.8906 35 1 2.2528 -1.6308 1.1519 36 1 2.8576 -2.6120 2.5739 37 1 3.6866 -3.7802 4.5702 38 1 3.9316 -2.5809 6.6970 39 1 3.5931 -0.6375 10.2873 40 1 2.5165 1.0256 4.8149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078870966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:00 Heat of formation + Delta-G solvation = -13.632350 kcal Electronic energy + Delta-G solvation = -23029.206348 eV Core-core repulsion = 19705.926739 eV Total energy + Delta-G solvation = -3323.279608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13176 -39.32326 -38.72154 -36.88230 -35.58531 -33.48842 -32.15164 -31.69960 -30.68071 -27.28085 -27.10794 -25.13276 -23.99704 -22.60100 -22.14963 -21.53992 -20.16761 -19.53268 -18.21801 -17.94346 -17.42782 -17.05979 -16.45687 -16.38610 -15.92244 -15.51430 -15.33945 -14.65165 -14.59581 -14.49126 -14.43011 -13.98721 -13.82008 -13.51870 -13.46331 -13.29992 -13.09052 -12.81794 -12.68294 -12.60851 -12.42514 -12.31131 -11.97928 -11.75287 -11.61671 -11.56109 -11.18147 -10.79989 -10.16725 -9.62116 -9.55442 -9.49893 -9.34742 -8.91744 -6.55921 0.11901 0.20419 0.74977 0.76868 1.12507 1.25163 1.41718 1.48608 1.89293 1.98779 2.13110 2.23074 2.66526 3.46314 3.70415 3.84117 3.99375 4.21280 4.27186 4.28193 4.37754 4.41495 4.51580 4.59934 4.69686 4.78287 4.82979 4.87514 4.90022 4.92473 5.07241 5.17953 5.24112 5.30927 5.42831 5.43764 5.54965 5.65075 5.66466 5.72555 5.84729 6.11934 6.30199 6.62294 6.67222 6.73922 7.30057 8.17636 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.019467 B = 0.003320 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.997936 B = 8430.677101 C = 8870.832528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.059 0.941 4 C -0.047 4.047 5 C -0.180 4.180 6 C -0.143 4.143 7 C -0.143 4.143 8 C -0.225 4.225 9 S 0.070 5.930 10 N -0.700 5.700 11 C 0.563 3.437 12 O -0.589 6.589 13 C -0.112 4.112 14 C -0.179 4.179 15 C -0.082 4.082 16 C -0.225 4.225 17 C 0.067 3.933 18 C -0.491 4.491 19 H 0.047 0.953 20 C 0.045 3.955 21 N -0.851 5.851 22 Si 0.969 3.031 23 H -0.245 1.245 24 H -0.278 1.278 25 H -0.251 1.251 26 C -0.170 4.170 27 H 0.079 0.921 28 H 0.032 0.968 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.176 0.824 35 H 0.412 0.588 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.106 0.894 39 H 0.295 0.705 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -9.427 -23.494 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.077 0.923 4 C -0.087 4.087 5 C -0.297 4.297 6 C -0.173 4.173 7 C -0.174 4.174 8 C -0.361 4.361 9 S 0.333 5.667 10 N -0.353 5.353 11 C 0.352 3.648 12 O -0.470 6.470 13 C -0.115 4.115 14 C -0.198 4.198 15 C -0.099 4.099 16 C -0.245 4.245 17 C 0.064 3.936 18 C -0.521 4.521 19 H 0.065 0.935 20 C -0.169 4.169 21 N -0.477 5.477 22 Si 0.791 3.209 23 H -0.170 1.170 24 H -0.204 1.204 25 H -0.175 1.175 26 C -0.191 4.191 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.194 0.806 35 H 0.251 0.749 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.105 -7.236 -24.026 25.180 hybrid contribution 0.669 -1.061 1.728 2.135 sum -1.436 -8.297 -22.298 23.835 Atomic orbital electron populations 1.22147 0.93704 1.03472 1.02343 1.21034 0.94767 0.96516 0.83695 0.92256 1.20529 0.87059 1.03866 0.97201 1.24645 1.00187 0.98943 1.05911 1.20389 0.92392 1.02100 1.02431 1.20487 0.97857 0.98143 1.00870 1.25860 1.01664 1.00874 1.07665 1.84284 0.98592 1.27994 1.55791 1.45781 1.66669 1.14472 1.08352 1.18566 0.76335 0.85773 0.84129 1.90683 1.52508 1.17901 1.85927 1.19742 1.03718 0.95613 0.92456 1.20991 1.07081 0.92175 0.99592 1.21051 0.97062 1.00097 0.91724 1.21383 1.09044 0.95128 0.98900 1.17758 0.90199 0.92935 0.92693 1.19465 1.44929 0.96952 0.90746 0.93499 1.26917 0.93051 1.02893 0.94056 1.69727 1.35411 1.41412 1.01151 0.85448 0.79851 0.77238 0.78392 1.16990 1.20430 1.17451 1.21190 1.05328 0.99032 0.93501 0.90220 0.94863 0.89372 0.86529 0.87238 0.82674 0.82992 0.80646 0.74934 0.83211 0.83366 0.87635 0.89446 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.48 71.98 0.68 -2.30 16 2 C 0.14 3.09 2.56 44.99 0.12 3.21 16 3 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 4 C -0.05 -0.65 5.25 29.85 0.16 -0.50 16 5 C -0.18 -3.29 5.53 24.59 0.14 -3.16 16 6 C -0.14 -2.61 9.81 21.22 0.21 -2.40 16 7 C -0.14 -2.72 10.18 21.22 0.22 -2.51 16 8 C -0.23 -4.32 11.23 66.72 0.75 -3.57 16 9 S 0.07 1.39 23.33 -56.49 -1.32 0.07 16 10 N -0.70 -17.83 4.60 -445.36 -2.05 -19.88 16 11 C 0.56 21.33 7.74 86.80 0.67 22.00 16 12 O -0.59 -27.26 16.00 -3.87 -0.06 -27.32 16 13 C -0.11 -4.62 5.87 -20.13 -0.12 -4.74 16 14 C -0.18 -5.91 9.55 22.70 0.22 -5.70 16 15 C -0.08 -2.87 10.01 22.18 0.22 -2.65 16 16 C -0.23 -10.05 7.17 22.77 0.16 -9.89 16 17 C 0.07 3.47 5.10 -21.32 -0.11 3.37 16 18 C -0.49 -28.69 9.57 23.47 0.22 -28.46 16 19 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 20 C 0.05 2.45 5.40 85.25 0.46 2.91 16 21 N -0.85 -47.48 13.93 21.82 0.30 -47.18 16 22 Si 0.97 41.82 24.52 68.60 1.68 43.50 16 23 H -0.25 -9.56 6.71 99.48 0.67 -8.89 16 24 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.25 -10.98 6.86 99.48 0.68 -10.30 16 26 C -0.17 -8.60 9.34 23.01 0.21 -8.38 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.16 2.16 8.04 -2.91 -0.02 2.13 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.41 7.86 6.53 -92.70 -0.61 7.26 16 36 H 0.15 3.33 6.38 -2.91 -0.02 3.31 16 37 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 38 H 0.11 4.63 4.72 -2.91 -0.01 4.62 16 39 H 0.30 14.65 8.30 -92.71 -0.77 13.88 16 40 H 0.08 4.66 7.64 -2.91 -0.02 4.64 16 Total: -1.00 -71.94 348.94 3.16 -68.78 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.40 Total: 24.81 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 4.21 Total: -42.77 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.74 Total: -67.06 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.68 Total: 43.50 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.32 Total: 0.07 kcal Total: -71.94 3.16 -68.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078870966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.149 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds