Wall clock time and date at job start Tue Mar 31 2020 11:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47150 * 2 1 4 4 C 1.46494 * 120.00037 * 274.90097 * 3 2 1 5 5 C 1.50703 * 109.47055 * 262.45022 * 4 3 2 6 6 H 1.08000 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00150 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99994 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46968 * 60.00308 * 9 7 5 11 11 H 1.48498 * 109.46947 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47088 * 300.00572 * 9 7 5 13 13 C 1.34775 * 119.99781 * 94.89947 * 3 2 1 14 14 O 1.21744 * 120.00135 * 2.22850 * 13 3 2 15 15 C 1.46309 * 119.99854 * 182.23141 * 13 3 2 16 16 S 1.75801 * 125.49290 * 351.06270 * 15 13 3 17 17 C 1.70538 * 91.76091 * 180.02562 * 16 15 13 18 18 C 1.33395 * 111.33553 * 0.02562 * 17 16 15 19 19 C 1.37860 * 125.48933 * 171.10801 * 15 13 3 20 20 C 1.48148 * 123.59143 * 359.97438 * 19 15 13 21 21 C 1.39459 * 120.12999 * 309.72492 * 20 19 15 22 22 C 1.37999 * 119.86586 * 179.72123 * 21 20 19 23 23 C 1.38347 * 120.12783 * 0.55268 * 22 21 20 24 24 C 1.38341 * 120.26955 * 359.72833 * 23 22 21 25 25 C 1.37985 * 120.13512 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47131 * 59.99496 * 1 2 3 27 27 H 1.08998 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46777 * 299.99859 * 1 2 3 29 29 H 1.09003 * 109.46960 * 240.00636 * 2 1 3 30 30 H 1.08997 * 109.47131 * 120.00504 * 2 1 3 31 31 H 1.09001 * 109.47510 * 22.45081 * 4 3 2 32 32 H 1.08998 * 109.47277 * 142.45584 * 4 3 2 33 33 H 0.97000 * 120.00228 * 179.97438 * 8 7 5 34 34 H 1.08001 * 124.32983 * 179.73938 * 17 16 15 35 35 H 1.08006 * 122.46681 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.07394 * 359.97438 * 21 20 19 37 37 H 1.07993 * 119.93176 * 180.27455 * 22 21 20 38 38 H 1.08001 * 119.86042 * 179.69648 * 23 22 21 39 39 H 1.08001 * 119.93363 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.06961 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1604 2.1080 -1.2640 5 6 3.5936 2.0391 -1.7248 6 1 4.3254 1.5069 -1.1353 7 6 3.9704 2.6547 -2.8996 8 7 3.0792 3.3024 -3.6178 9 14 5.7471 2.5700 -3.4703 10 1 6.1362 1.1506 -3.6683 11 1 5.8910 3.3065 -4.7517 12 1 6.6265 3.1858 -2.4444 13 6 2.3370 1.9833 1.1629 14 8 2.2577 1.3664 2.2095 15 6 2.7781 3.3783 1.1677 16 16 3.1569 4.3339 -0.2585 17 6 3.5382 5.6976 0.6918 18 6 3.3880 5.4403 1.9921 19 6 2.9646 4.1550 2.2913 20 6 2.7369 3.6675 3.6717 21 6 1.5423 3.0272 3.9998 22 6 1.3383 2.5701 5.2859 23 6 2.3114 2.7563 6.2515 24 6 3.4961 3.3960 5.9334 25 6 3.7141 3.8519 4.6494 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5145 1.6566 -2.0172 32 1 1.8754 3.1498 -1.1181 33 1 3.3444 3.7358 -4.4440 34 1 3.8644 6.6465 0.2923 35 1 3.5819 6.1793 2.7555 36 1 0.7799 2.8855 3.2481 37 1 0.4154 2.0702 5.5401 38 1 2.1452 2.4012 7.2578 39 1 4.2522 3.5380 6.6914 40 1 4.6395 4.3508 4.4022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133285947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:17 Heat of formation + Delta-G solvation = 24.147706 kcal Electronic energy + Delta-G solvation = -24094.916314 eV Core-core repulsion = 20773.274972 eV Total energy + Delta-G solvation = -3321.641342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.49675 -38.49502 -36.62715 -35.17119 -33.08804 -31.07922 -30.77817 -30.51214 -28.21699 -27.27096 -24.62128 -23.31103 -22.66698 -22.02188 -21.40709 -19.66242 -18.10178 -17.25864 -16.68735 -16.37180 -15.53198 -15.17081 -14.75681 -14.60317 -14.33224 -14.24949 -13.85820 -13.23397 -13.03571 -12.75535 -12.64707 -12.53148 -12.42204 -12.31631 -12.10662 -11.72577 -11.68328 -11.41780 -11.10364 -10.97518 -10.77313 -10.64249 -10.57920 -10.25644 -9.97609 -9.27972 -9.22919 -8.81405 -8.60291 -8.43420 -7.95364 -7.81937 -7.35385 -6.40822 -4.43742 1.13540 1.81750 1.87469 2.49770 2.96080 3.06951 3.15427 3.19245 3.23575 3.86938 3.97015 4.18797 4.29578 4.93173 5.20350 5.28013 5.30568 5.37921 5.48031 5.65274 5.74839 5.78872 5.82815 5.86694 5.96821 6.00372 6.20588 6.31839 6.34779 6.42273 6.50919 6.57740 6.59701 6.74664 6.81232 6.87402 6.89255 7.05795 7.14423 7.39200 7.40942 7.55943 7.73587 8.19651 8.57888 8.97504 9.17226 10.62971 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.005408 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.804351 B = 5176.668461 C = 6262.656412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.597 5.597 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.069 0.931 7 C 0.076 3.924 8 N -0.877 5.877 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.586 3.414 14 O -0.553 6.553 15 C -0.282 4.282 16 S 0.412 5.588 17 C -0.338 4.338 18 C -0.150 4.150 19 C -0.027 4.027 20 C -0.007 4.007 21 C -0.056 4.056 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.109 4.109 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.271 0.729 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 1.504 8.765 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.328 5.328 4 C 0.104 3.896 5 C -0.580 4.580 6 H 0.087 0.913 7 C -0.130 4.130 8 N -0.513 5.513 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.195 1.195 13 C 0.375 3.625 14 O -0.434 6.434 15 C -0.403 4.403 16 S 0.691 5.309 17 C -0.475 4.475 18 C -0.180 4.180 19 C -0.044 4.044 20 C -0.009 4.009 21 C -0.075 4.075 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.150 4.150 25 C -0.128 4.128 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.167 0.833 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.565 1.118 7.483 7.989 hybrid contribution 1.152 0.448 0.943 1.555 sum -1.413 1.566 8.426 8.686 Atomic orbital electron populations 1.22123 0.96743 1.01324 1.02008 1.21251 0.93432 0.83210 1.02752 1.48069 1.63322 1.13784 1.07608 1.19656 0.98125 0.91190 0.80660 1.21501 0.94246 1.34831 1.07415 0.91330 1.24910 0.98084 0.94347 0.95667 1.69894 1.33946 1.32705 1.14721 0.86625 0.84373 0.78907 0.78393 1.19729 1.20735 1.19494 1.16923 0.77052 0.84848 0.83648 1.90756 1.55933 1.65422 1.31323 1.24846 1.17006 0.99715 0.98776 1.86044 1.51735 0.93277 0.99823 1.26510 1.10200 1.09269 1.01557 1.19554 1.06462 0.96049 0.95947 1.17981 1.01858 0.93043 0.91492 1.18315 0.94074 0.97648 0.90893 1.21035 0.96463 0.94555 0.95411 1.20945 0.99281 1.00821 0.93446 1.21034 0.94372 1.00208 0.98914 1.20894 0.97502 1.00325 0.96257 1.21117 0.98487 1.00435 0.92732 0.92506 0.92290 0.92847 0.90629 0.90473 0.92953 0.94192 0.91884 0.83341 0.86111 0.86696 0.86695 0.86881 0.86682 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.24 37.16 0.38 -2.11 16 2 C 0.12 2.09 6.16 -4.04 -0.02 2.06 16 3 N -0.60 -12.48 2.48 -176.74 -0.44 -12.92 16 4 C 0.23 5.04 4.76 -5.20 -0.02 5.01 16 5 C -0.54 -12.84 6.95 -34.44 -0.24 -13.08 16 6 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.08 1.82 5.02 -17.82 -0.09 1.73 16 8 N -0.88 -21.45 13.29 55.43 0.74 -20.72 16 9 Si 0.89 19.11 29.54 -169.99 -5.02 14.09 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.59 12.86 7.22 -13.02 -0.09 12.76 16 14 O -0.55 -12.63 12.72 5.15 0.07 -12.57 16 15 C -0.28 -5.94 6.21 -36.48 -0.23 -6.17 16 16 S 0.41 8.35 15.86 -107.50 -1.70 6.65 16 17 C -0.34 -6.00 10.88 29.04 0.32 -5.69 16 18 C -0.15 -2.66 9.85 -41.14 -0.41 -3.06 16 19 C -0.03 -0.52 5.44 -105.83 -0.58 -1.10 16 20 C -0.01 -0.14 4.95 -104.92 -0.52 -0.65 16 21 C -0.06 -1.01 7.27 -39.21 -0.29 -1.29 16 22 C -0.13 -1.96 10.03 -39.63 -0.40 -2.36 16 23 C -0.13 -1.79 10.04 -39.50 -0.40 -2.19 16 24 C -0.13 -1.89 10.03 -39.64 -0.40 -2.29 16 25 C -0.11 -1.78 9.64 -39.22 -0.38 -2.16 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 30 H 0.08 1.41 7.25 -51.93 -0.38 1.03 16 31 H 0.05 1.20 8.02 -51.93 -0.42 0.79 16 32 H 0.04 0.93 4.51 -22.45 -0.10 0.83 16 33 H 0.27 6.37 8.31 -40.82 -0.34 6.04 16 34 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 35 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 36 H 0.11 2.15 7.38 -52.49 -0.39 1.76 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -26.48 344.06 -9.59 -36.06 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.05 Total: 4.82 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.36 Total: -20.60 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.30 Total: -33.64 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 8.35 SS G_CDS: -1.70 Total: 6.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.48 -9.59 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133285947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.212 kcal (2) G-P(sol) polarization free energy of solvation -26.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds