Wall clock time and date at job start Tue Mar 31 2020 11:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47150 * 2 1 4 4 C 1.46494 * 120.00037 * 274.90097 * 3 2 1 5 5 C 1.50703 * 109.47055 * 262.45022 * 4 3 2 6 6 H 1.08000 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00150 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99994 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46968 * 60.00308 * 9 7 5 11 11 H 1.48498 * 109.46947 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47088 * 300.00572 * 9 7 5 13 13 C 1.34775 * 119.99781 * 94.89947 * 3 2 1 14 14 O 1.21744 * 120.00135 * 2.22850 * 13 3 2 15 15 C 1.46309 * 119.99854 * 182.23141 * 13 3 2 16 16 S 1.75801 * 125.49290 * 351.06270 * 15 13 3 17 17 C 1.70538 * 91.76091 * 180.02562 * 16 15 13 18 18 C 1.33395 * 111.33553 * 0.02562 * 17 16 15 19 19 C 1.37860 * 125.48933 * 171.10801 * 15 13 3 20 20 C 1.48148 * 123.59143 * 359.97438 * 19 15 13 21 21 C 1.39459 * 120.12999 * 309.72492 * 20 19 15 22 22 C 1.37999 * 119.86586 * 179.72123 * 21 20 19 23 23 C 1.38347 * 120.12783 * 0.55268 * 22 21 20 24 24 C 1.38341 * 120.26955 * 359.72833 * 23 22 21 25 25 C 1.37985 * 120.13512 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47131 * 59.99496 * 1 2 3 27 27 H 1.08998 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46777 * 299.99859 * 1 2 3 29 29 H 1.09003 * 109.46960 * 240.00636 * 2 1 3 30 30 H 1.08997 * 109.47131 * 120.00504 * 2 1 3 31 31 H 1.09001 * 109.47510 * 22.45081 * 4 3 2 32 32 H 1.08998 * 109.47277 * 142.45584 * 4 3 2 33 33 H 0.97000 * 120.00228 * 179.97438 * 8 7 5 34 34 H 1.08001 * 124.32983 * 179.73938 * 17 16 15 35 35 H 1.08006 * 122.46681 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.07394 * 359.97438 * 21 20 19 37 37 H 1.07993 * 119.93176 * 180.27455 * 22 21 20 38 38 H 1.08001 * 119.86042 * 179.69648 * 23 22 21 39 39 H 1.08001 * 119.93363 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.06961 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1604 2.1080 -1.2640 5 6 3.5936 2.0391 -1.7248 6 1 4.3254 1.5069 -1.1353 7 6 3.9704 2.6547 -2.8996 8 7 3.0792 3.3024 -3.6178 9 14 5.7471 2.5700 -3.4703 10 1 6.1362 1.1506 -3.6683 11 1 5.8910 3.3065 -4.7517 12 1 6.6265 3.1858 -2.4444 13 6 2.3370 1.9833 1.1629 14 8 2.2577 1.3664 2.2095 15 6 2.7781 3.3783 1.1677 16 16 3.1569 4.3339 -0.2585 17 6 3.5382 5.6976 0.6918 18 6 3.3880 5.4403 1.9921 19 6 2.9646 4.1550 2.2913 20 6 2.7369 3.6675 3.6717 21 6 1.5423 3.0272 3.9998 22 6 1.3383 2.5701 5.2859 23 6 2.3114 2.7563 6.2515 24 6 3.4961 3.3960 5.9334 25 6 3.7141 3.8519 4.6494 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5145 1.6566 -2.0172 32 1 1.8754 3.1498 -1.1181 33 1 3.3444 3.7358 -4.4440 34 1 3.8644 6.6465 0.2923 35 1 3.5819 6.1793 2.7555 36 1 0.7799 2.8855 3.2481 37 1 0.4154 2.0702 5.5401 38 1 2.1452 2.4012 7.2578 39 1 4.2522 3.5380 6.6914 40 1 4.6395 4.3508 4.4022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133285947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:16 Heat of formation + Delta-G solvation = 13.050992 kcal Electronic energy + Delta-G solvation = -24095.397504 eV Core-core repulsion = 20773.274972 eV Total energy + Delta-G solvation = -3322.122532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.01909 -39.89068 -38.03314 -36.84679 -34.84286 -32.56909 -32.09809 -31.72051 -29.71462 -28.98376 -26.04041 -25.08500 -24.09413 -23.26031 -22.70846 -21.20244 -19.51487 -18.95176 -18.46562 -17.74794 -16.96138 -16.75525 -16.35881 -16.10885 -15.78464 -15.59894 -15.22198 -14.64990 -14.43461 -14.28778 -14.11024 -14.08213 -13.92199 -13.73176 -13.51527 -13.19177 -13.15916 -12.88957 -12.69812 -12.61745 -12.19829 -12.02665 -11.85668 -11.83480 -11.76177 -10.93059 -10.77535 -10.58536 -9.99037 -9.72115 -9.47592 -9.41031 -8.84771 -8.23284 -6.31269 -0.35675 0.54850 0.64612 0.94714 1.39747 1.45439 1.49317 1.51048 1.61657 2.25024 2.36923 2.44687 3.04054 3.08383 3.79637 3.90112 4.12233 4.19780 4.24774 4.33362 4.37698 4.45466 4.50730 4.54572 4.70996 4.73745 4.76104 4.90358 4.99502 5.04221 5.07272 5.18311 5.24413 5.29301 5.38665 5.47346 5.62648 5.67793 5.71928 5.80927 5.85405 5.92644 6.20666 6.47573 6.73797 7.26322 7.36460 8.80117 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.005408 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.804351 B = 5176.668461 C = 6262.656412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.111 3.889 3 N -0.601 5.601 4 C 0.236 3.764 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.051 3.949 8 N -0.896 5.896 9 Si 0.933 3.067 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.271 1.271 13 C 0.580 3.420 14 O -0.569 6.569 15 C -0.311 4.311 16 S 0.364 5.636 17 C -0.317 4.317 18 C -0.152 4.152 19 C -0.020 4.020 20 C -0.039 4.039 21 C -0.076 4.076 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.118 4.118 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.273 0.727 34 H 0.178 0.822 35 H 0.150 0.850 36 H 0.093 0.907 37 H 0.134 0.866 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 2.073 10.709 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 N -0.331 5.331 4 C 0.113 3.887 5 C -0.584 4.584 6 H 0.068 0.932 7 C -0.153 4.153 8 N -0.533 5.533 9 Si 0.758 3.242 10 H -0.200 1.200 11 H -0.199 1.199 12 H -0.196 1.196 13 C 0.370 3.630 14 O -0.453 6.453 15 C -0.432 4.432 16 S 0.642 5.358 17 C -0.454 4.454 18 C -0.182 4.182 19 C -0.038 4.038 20 C -0.041 4.041 21 C -0.095 4.095 22 C -0.152 4.152 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.136 4.136 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.196 0.804 35 H 0.168 0.832 36 H 0.111 0.889 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.902 1.662 9.410 9.743 hybrid contribution 0.925 0.307 0.528 1.108 sum -0.978 1.969 9.937 10.178 Atomic orbital electron populations 1.22022 0.94536 1.03143 1.01302 1.21441 0.95260 0.81844 1.02614 1.48154 1.63272 1.14700 1.06987 1.19448 0.97128 0.91332 0.80792 1.21423 0.94495 1.34994 1.07537 0.93207 1.25316 1.00422 0.94010 0.95596 1.69944 1.35026 1.33290 1.15019 0.85968 0.81379 0.78639 0.78168 1.19966 1.19940 1.19627 1.17136 0.76923 0.85373 0.83599 1.90720 1.56898 1.65979 1.31685 1.24898 1.19082 0.99757 0.99443 1.86028 1.53748 0.95125 1.00914 1.26674 1.08490 1.09206 1.01044 1.19841 1.05835 0.95876 0.96633 1.18420 0.99946 0.93471 0.91967 1.18468 0.95258 0.99483 0.90873 1.20998 0.96279 0.95957 0.96282 1.21243 1.00688 1.00487 0.92767 1.21483 0.93486 0.98726 1.00121 1.21324 0.98315 0.98889 0.96077 1.21342 0.98351 1.00704 0.93235 0.92757 0.89178 0.93879 0.90214 0.91023 0.94099 0.94359 0.91710 0.80437 0.83248 0.88903 0.84795 0.83257 0.83227 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.24 71.98 0.74 -3.89 16 2 C 0.11 4.05 6.16 86.38 0.53 4.59 16 3 N -0.60 -26.06 2.48 -831.27 -2.06 -28.12 16 4 C 0.24 10.89 4.76 85.64 0.41 11.30 16 5 C -0.54 -26.64 6.95 25.60 0.18 -26.47 16 6 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 7 C 0.05 2.45 5.02 84.66 0.43 2.88 16 8 N -0.90 -44.32 13.29 21.45 0.28 -44.03 16 9 Si 0.93 39.17 29.54 68.60 2.03 41.20 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.58 26.37 7.22 86.34 0.62 26.99 16 14 O -0.57 -26.87 12.72 -4.49 -0.06 -26.93 16 15 C -0.31 -13.46 6.21 24.28 0.15 -13.31 16 16 S 0.36 14.99 15.86 -56.49 -0.90 14.10 16 17 C -0.32 -10.84 10.88 66.72 0.73 -10.12 16 18 C -0.15 -5.18 9.85 21.26 0.21 -4.97 16 19 C -0.02 -0.80 5.44 -20.65 -0.11 -0.91 16 20 C -0.04 -1.42 4.95 -20.06 -0.10 -1.52 16 21 C -0.08 -2.76 7.27 22.51 0.16 -2.59 16 22 C -0.13 -3.94 10.03 22.24 0.22 -3.72 16 23 C -0.12 -2.98 10.04 22.32 0.22 -2.76 16 24 C -0.13 -3.25 10.03 22.23 0.22 -3.02 16 25 C -0.12 -3.62 9.64 22.50 0.22 -3.41 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 30 H 0.07 2.68 7.25 -2.39 -0.02 2.66 16 31 H 0.04 1.95 8.02 -2.39 -0.02 1.93 16 32 H 0.04 1.85 4.51 -21.13 -0.10 1.76 16 33 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 34 H 0.18 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 36 H 0.09 3.65 7.38 -2.91 -0.02 3.63 16 37 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -57.87 344.06 5.08 -52.79 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.96 Total: 21.93 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 4.83 Total: -30.93 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.78 Total: -72.15 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.06 Total: -26.93 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Atomic # 16 Polarization: 14.99 SS G_CDS: -0.90 Total: 14.10 kcal Total: -57.87 5.08 -52.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133285947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.838 kcal (2) G-P(sol) polarization free energy of solvation -57.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds