Wall clock time and date at job start Tue Mar 31 2020 11:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46810 * 180.02562 * 10 9 7 12 12 C 1.76197 * 103.00045 * 179.97438 * 11 10 9 13 13 N 1.31345 * 125.49076 * 359.69307 * 12 11 10 14 14 N 1.40424 * 106.94959 * 179.85900 * 13 12 11 15 15 H 0.97002 * 126.80668 * 180.19319 * 14 13 12 16 16 C 1.35175 * 106.38707 * 0.39850 * 14 13 12 17 17 C 1.47965 * 126.03123 * 179.75486 * 16 14 13 18 18 C 1.39524 * 120.17621 * 359.75554 * 17 16 14 19 19 C 1.37827 * 119.78695 * 179.68743 * 18 17 16 20 20 C 1.38650 * 120.40495 * 0.61152 * 19 18 17 21 21 C 1.38355 * 120.06619 * 359.66741 * 20 19 18 22 22 C 1.38255 * 119.99133 * 0.02562 * 21 20 19 23 23 C 1.51397 * 109.74169 * 179.97438 * 21 20 19 24 24 C 1.54335 * 105.17548 * 342.78772 * 23 21 20 25 25 C 1.51419 * 130.22070 * 179.66412 * 20 19 18 26 26 N 1.31807 * 107.94218 * 359.76153 * 16 14 13 27 27 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 29 29 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 30 30 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 31 31 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 32 32 H 1.07997 * 120.10370 * 359.97269 * 18 17 16 33 33 H 1.08010 * 119.79282 * 180.29540 * 19 18 17 34 34 H 1.08001 * 119.94487 * 180.02562 * 22 21 20 35 35 H 1.09001 * 110.30296 * 101.71509 * 23 21 20 36 36 H 1.09002 * 110.30665 * 223.86130 * 23 21 20 37 37 H 1.08996 * 110.81756 * 268.17728 * 24 23 21 38 38 H 1.08999 * 110.98667 * 144.71273 * 24 23 21 39 39 H 1.09002 * 110.30156 * 316.15955 * 25 20 19 40 40 H 1.08996 * 110.30258 * 78.31183 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 16 5.8356 -2.6364 0.0025 12 6 6.2320 -4.3532 0.0029 13 7 5.3616 -5.3368 0.0080 14 7 6.0962 -6.5336 0.0030 15 1 5.7383 -7.4352 0.0023 16 6 7.4009 -6.1802 0.0040 17 6 8.5538 -7.1076 0.0050 18 6 8.3443 -8.4870 0.0102 19 6 9.4241 -9.3436 0.0046 20 6 10.7170 -8.8430 0.0066 21 6 10.9310 -7.4761 0.0074 22 6 9.8549 -6.6081 0.0066 23 6 12.4179 -7.1912 0.0102 24 6 13.0816 -8.5127 0.4520 25 6 12.0463 -9.5680 0.0084 26 7 7.4650 -4.8637 0.0040 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6800 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.6586 -3.1502 -0.8892 31 1 3.6580 -3.1505 0.8908 32 1 7.3393 -8.8823 0.0139 33 1 9.2619 -10.4115 0.0038 34 1 10.0228 -5.5412 0.0067 35 1 12.7522 -6.9160 -0.9901 36 1 12.6494 -6.3963 0.7192 37 1 13.2188 -8.5349 1.5330 38 1 14.0317 -8.6629 -0.0607 39 1 12.0242 -10.3967 0.7163 40 1 12.2806 -9.9307 -0.9924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151197901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:41 Heat of formation + Delta-G solvation = 92.594379 kcal Electronic energy + Delta-G solvation = -21602.420213 eV Core-core repulsion = 18316.039692 eV Total energy + Delta-G solvation = -3286.380520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.03613 -40.39231 -36.32715 -33.75999 -32.69490 -32.44181 -31.35690 -31.08054 -29.02957 -27.72757 -25.58509 -23.71264 -23.47876 -22.04176 -21.26432 -20.73229 -20.37830 -18.35003 -17.01017 -16.38981 -16.27720 -16.00431 -15.72661 -15.62382 -15.43241 -14.42623 -13.97486 -13.94018 -13.68802 -13.34148 -13.24529 -13.17390 -12.74614 -12.48236 -12.16983 -11.86227 -11.77717 -11.64383 -11.52823 -11.25459 -11.21993 -10.71151 -10.50691 -10.30931 -10.19855 -10.11595 -10.03569 -9.64195 -9.24136 -9.19556 -8.70945 -8.59675 -7.36953 -6.09899 -4.10394 0.36986 0.95017 1.49068 1.73271 2.39563 2.73048 2.94839 3.30599 3.38001 3.41919 3.42099 3.83720 3.95976 4.08884 4.41337 4.50755 4.53421 4.56203 4.71146 4.83744 4.96369 5.16266 5.22139 5.23386 5.28120 5.35882 5.41749 5.57850 5.63820 5.69944 5.75114 5.87614 5.89456 5.99193 6.02677 6.14911 6.20414 6.45764 6.50746 6.89155 7.05155 7.17283 7.63872 7.85681 8.43600 8.92422 9.49755 11.02698 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.038468 B = 0.002111 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.708121 B =13259.707074 C =13943.338324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.076 0.924 9 C 0.002 3.998 10 C -0.078 4.078 11 S -0.012 6.012 12 C 0.221 3.779 13 N -0.307 5.307 14 N -0.477 5.477 15 H 0.439 0.561 16 C 0.328 3.672 17 C -0.028 4.028 18 C -0.098 4.098 19 C -0.106 4.106 20 C -0.081 4.081 21 C -0.098 4.098 22 C -0.052 4.052 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.085 4.085 26 N -0.507 5.507 27 H 0.265 0.735 28 H 0.029 0.971 29 H 0.024 0.976 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.374 -21.475 0.115 34.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.038 4.038 10 C -0.226 4.226 11 S 0.216 5.784 12 C -0.168 4.168 13 N -0.140 5.140 14 N -0.196 5.196 15 H 0.284 0.716 16 C 0.051 3.949 17 C -0.031 4.031 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.082 4.082 21 C -0.098 4.098 22 C -0.072 4.072 23 C -0.120 4.120 24 C -0.159 4.159 25 C -0.122 4.122 26 N -0.237 5.237 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 26.430 -20.068 0.125 33.186 hybrid contribution -0.867 -1.043 -0.043 1.357 sum 25.563 -21.112 0.082 33.154 Atomic orbital electron populations 1.69891 1.06262 1.27131 1.50337 1.24960 0.94764 0.99140 0.94243 0.86800 0.80513 0.83454 0.78796 1.20006 1.21158 1.18695 1.20897 0.88084 0.94899 1.51973 0.90618 1.19409 0.97631 0.88948 0.97770 1.23831 0.88061 1.04921 1.05819 1.85692 1.11344 0.89677 1.91675 1.26264 0.88973 1.01300 1.00260 1.78559 1.17410 0.89121 1.28944 1.47915 1.04450 1.09345 1.57853 0.71551 1.22201 0.85048 0.90860 0.96829 1.17397 0.89593 0.90521 1.05623 1.20950 0.99266 0.91534 1.00032 1.20452 0.90776 0.99804 1.01401 1.20829 0.94617 0.94827 0.97886 1.20555 0.95494 0.93540 1.00232 1.20720 0.89558 1.00838 0.96075 1.21079 0.89794 0.98582 1.02562 1.22307 0.98054 0.93800 1.01697 1.21118 0.90599 0.98139 1.02318 1.70755 1.22930 1.04766 1.25227 0.92495 0.95275 0.95724 0.89615 0.89595 0.85762 0.85402 0.84213 0.89820 0.90205 0.90780 0.90310 0.90424 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C 0.00 0.05 4.05 -27.88 -0.11 -0.06 16 10 C -0.08 -1.63 5.49 37.16 0.20 -1.42 16 11 S -0.01 -0.23 22.16 -107.50 -2.38 -2.62 16 12 C 0.22 4.09 8.26 -91.10 -0.75 3.34 16 13 N -0.31 -5.44 12.34 30.10 0.37 -5.07 16 14 N -0.48 -6.39 7.33 32.24 0.24 -6.16 16 15 H 0.44 4.04 8.11 -182.35 -1.48 2.56 16 16 C 0.33 4.55 7.82 -155.48 -1.22 3.34 16 17 C -0.03 -0.31 5.87 -105.01 -0.62 -0.92 16 18 C -0.10 -0.79 9.70 -39.25 -0.38 -1.17 16 19 C -0.11 -0.74 10.02 -39.58 -0.40 -1.14 16 20 C -0.08 -0.59 6.14 -104.07 -0.64 -1.23 16 21 C -0.10 -0.82 6.13 -104.23 -0.64 -1.45 16 22 C -0.05 -0.53 9.69 -39.16 -0.38 -0.91 16 23 C -0.08 -0.49 6.77 -26.84 -0.18 -0.68 16 24 C -0.12 -0.54 7.08 -25.33 -0.18 -0.71 16 25 C -0.08 -0.41 6.77 -26.83 -0.18 -0.59 16 26 N -0.51 -8.62 10.86 -11.47 -0.12 -8.75 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 29 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 30 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 31 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 32 H 0.12 0.71 7.20 -52.49 -0.38 0.33 16 33 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 34 H 0.14 1.51 7.84 -52.49 -0.41 1.10 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -33.42 351.22 -12.83 -46.25 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.43 Total: -2.44 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -5.90 Total: -16.68 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 1.26 Total: -46.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.38 Total: -2.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.42 -12.83 -46.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151197901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.846 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds