Wall clock time and date at job start Tue Mar 31 2020 10:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 H 1.09001 * 109.47094 * 180.95005 * 3 2 1 5 5 C 1.50700 * 109.47010 * 300.95111 * 3 2 1 6 6 H 1.07997 * 119.99668 * 114.80873 * 5 3 2 7 7 C 1.37875 * 119.99914 * 294.79968 * 5 3 2 8 8 N 1.31512 * 120.00373 * 354.17705 * 7 5 3 9 9 Si 1.86797 * 119.99881 * 174.17296 * 7 5 3 10 10 H 1.48499 * 109.47223 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47029 * 300.00119 * 9 7 5 12 12 H 1.48500 * 109.47263 * 60.00246 * 9 7 5 13 13 N 1.46501 * 109.46973 * 60.95123 * 3 2 1 14 14 S 1.65600 * 120.00152 * 95.42692 * 13 3 2 15 15 O 1.42105 * 104.27635 * 180.88472 * 14 13 3 16 16 O 1.42103 * 104.27873 * 308.74349 * 14 13 3 17 17 C 1.81404 * 104.44739 * 64.81448 * 14 13 3 18 18 C 1.50700 * 109.47084 * 179.97438 * 17 14 13 19 19 C 1.38216 * 120.01307 * 269.72980 * 18 17 14 20 20 C 1.38221 * 120.02722 * 179.72401 * 19 18 17 21 21 C 1.38272 * 120.04697 * 0.54672 * 20 19 18 22 22 C 1.50704 * 119.98556 * 179.74920 * 21 20 19 23 23 C 1.38170 * 120.02965 * 359.72303 * 21 20 19 24 24 C 1.38442 * 120.01173 * 89.99877 * 18 17 14 25 25 F 1.35100 * 120.02317 * 0.02562 * 24 18 17 26 26 H 1.09000 * 109.46837 * 305.11813 * 1 2 3 27 27 H 1.08995 * 109.47310 * 65.11780 * 1 2 3 28 28 H 1.09002 * 109.46651 * 185.12054 * 1 2 3 29 29 H 1.09003 * 109.47131 * 239.99907 * 2 1 3 30 30 H 1.09007 * 109.47598 * 120.00147 * 2 1 3 31 31 H 0.97002 * 119.99436 * 355.77695 * 8 7 5 32 32 H 0.97006 * 119.99768 * 275.43309 * 13 3 2 33 33 H 1.09007 * 109.46955 * 299.99859 * 17 14 13 34 34 H 1.08993 * 109.46849 * 60.00105 * 17 14 13 35 35 H 1.07998 * 119.98692 * 359.97438 * 19 18 17 36 36 H 1.07996 * 119.98286 * 180.26901 * 20 19 18 37 37 H 1.09004 * 109.46847 * 269.97561 * 22 21 20 38 38 H 1.09001 * 109.47018 * 29.97704 * 22 21 20 39 39 H 1.09006 * 109.47172 * 149.97809 * 22 21 20 40 40 H 1.07998 * 120.01901 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0170 5 6 1.5185 2.1597 -1.2185 6 1 0.8320 2.9857 -1.1062 7 6 1.9180 1.7613 -2.4765 8 7 2.8400 0.8330 -2.6105 9 14 1.1497 2.5399 -3.9907 10 1 1.7465 1.9418 -5.2118 11 1 -0.3148 2.2940 -3.9847 12 1 1.4061 4.0026 -3.9793 13 7 1.5705 2.1264 1.2075 14 16 2.5451 2.2102 2.5437 15 8 1.7656 2.9118 3.5026 16 8 2.9478 0.8661 2.7686 17 6 3.9571 3.2171 2.0115 18 6 4.9264 3.3675 3.1556 19 6 4.8024 4.4292 4.0318 20 6 5.6878 4.5643 5.0845 21 6 6.7054 3.6438 5.2558 22 6 7.6734 3.7956 6.4009 23 6 6.8347 2.5847 4.3780 24 6 5.9448 2.4453 3.3261 25 9 6.0705 1.4104 2.4668 26 1 -0.3633 0.5912 0.8406 27 1 -0.3633 0.4324 -0.9322 28 1 -0.3633 -1.0236 0.0917 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2826 0.4724 -1.8264 32 1 0.6886 2.5302 1.2243 33 1 4.4559 2.7295 1.1739 34 1 3.6054 4.2012 1.7021 35 1 4.0109 5.1514 3.8961 36 1 5.5876 5.3917 5.7713 37 1 8.5218 4.4008 6.0815 38 1 7.1731 4.2837 7.2373 39 1 8.0253 2.8119 6.7119 40 1 7.6293 1.8657 4.5122 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192842570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:00 Heat of formation + Delta-G solvation = -133.079519 kcal Electronic energy + Delta-G solvation = -24820.310281 eV Core-core repulsion = 21061.081830 eV Total energy + Delta-G solvation = -3759.228451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.10574 -40.40092 -38.48799 -37.97363 -37.09713 -35.15603 -34.19883 -32.24273 -31.69692 -30.70172 -27.81442 -26.36786 -25.66692 -24.02065 -22.36836 -22.01467 -20.33444 -19.48542 -18.67614 -18.21093 -17.85007 -17.66262 -16.96028 -16.76757 -16.46594 -15.84578 -15.50042 -15.22991 -15.18292 -14.90140 -14.63963 -14.55618 -14.50023 -14.22202 -14.05037 -13.32056 -13.28859 -13.20445 -13.17707 -12.94364 -12.88130 -12.63188 -12.60583 -12.29285 -12.21030 -12.10431 -12.02202 -11.92322 -11.75370 -10.89277 -10.46421 -10.14272 -9.99904 -9.61613 -8.55731 -6.30940 -0.93443 0.02004 0.08231 1.59446 1.65360 1.74643 1.84197 2.38841 2.59086 2.65204 3.03360 3.12622 3.17406 3.22017 3.56071 3.79765 3.91384 4.16372 4.20218 4.24724 4.31321 4.41427 4.55870 4.61320 4.66955 4.70239 4.85140 4.92773 4.99775 5.04387 5.14361 5.21722 5.24276 5.32233 5.41096 5.49140 5.55122 5.78838 5.87354 6.20387 6.37337 6.59772 7.46219 8.79974 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.004009 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.777609 B = 6981.999507 C = 7304.671886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 C 0.269 3.731 4 H 0.012 0.988 5 C -0.601 4.601 6 H 0.065 0.935 7 C -0.019 4.019 8 N -0.931 5.931 9 Si 1.109 2.891 10 H -0.291 1.291 11 H -0.271 1.271 12 H -0.270 1.270 13 N -1.095 6.095 14 S 2.612 3.388 15 O -0.981 6.981 16 O -0.989 6.989 17 C -0.572 4.572 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.047 4.047 22 C -0.114 4.114 23 C -0.162 4.162 24 C 0.081 3.919 25 F -0.148 7.148 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.417 0.583 33 H 0.132 0.868 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.017 9.637 15.414 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.180 4.180 3 C 0.163 3.837 4 H 0.030 0.970 5 C -0.640 4.640 6 H 0.083 0.917 7 C -0.219 4.219 8 N -0.568 5.568 9 Si 0.932 3.068 10 H -0.217 1.217 11 H -0.197 1.197 12 H -0.195 1.195 13 N -0.855 5.855 14 S 2.708 3.292 15 O -0.971 6.971 16 O -0.980 6.980 17 C -0.701 4.701 18 C -0.159 4.159 19 C -0.101 4.101 20 C -0.142 4.142 21 C -0.048 4.048 22 C -0.171 4.171 23 C -0.180 4.180 24 C 0.061 3.939 25 F -0.127 7.127 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.252 0.748 33 H 0.150 0.850 34 H 0.191 0.809 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.974 9.031 14.556 18.495 hybrid contribution 0.114 -0.220 0.419 0.487 sum 7.088 8.810 14.975 18.765 Atomic orbital electron populations 1.21446 0.94836 1.00033 1.01563 1.21984 0.98017 0.98669 0.99291 1.18411 0.92745 0.89490 0.83087 0.97013 1.22275 1.30932 1.18925 0.91915 0.91657 1.26999 0.95462 0.95423 1.04031 1.70908 1.24492 1.27721 1.33714 0.83020 0.75829 0.75654 0.72318 1.21714 1.19668 1.19547 1.55283 1.29316 1.70812 1.30060 1.04755 0.75931 0.75134 0.73428 1.93508 1.67694 1.76036 1.59873 1.93538 1.84314 1.35231 1.84874 1.29415 1.16113 1.18428 1.06154 1.19260 0.98152 0.99525 0.98944 1.21437 0.99871 0.95483 0.93284 1.21594 0.93969 1.00567 0.98051 1.20351 0.96281 0.92157 0.96020 1.20954 0.97543 1.04168 0.94398 1.21363 1.00383 1.01766 0.94526 1.18109 0.97938 0.86463 0.91416 1.91507 1.95521 1.56635 1.69037 0.93033 0.92874 0.93406 0.93225 0.94437 0.92946 0.74785 0.84998 0.80930 0.82247 0.80897 0.88962 0.89006 0.90333 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.47 71.98 0.68 -4.42 16 2 C -0.14 -6.70 5.59 30.59 0.17 -6.53 16 3 C 0.27 12.84 1.99 44.25 0.09 12.93 16 4 H 0.01 0.62 6.52 -2.39 -0.02 0.61 16 5 C -0.60 -30.29 7.48 25.60 0.19 -30.10 16 6 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 7 C -0.02 -1.01 5.26 84.65 0.45 -0.56 16 8 N -0.93 -53.47 12.90 21.45 0.28 -53.19 16 9 Si 1.11 46.89 29.91 68.60 2.05 48.94 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 12 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 13 N -1.10 -44.27 4.68 -172.52 -0.81 -45.08 16 14 S 2.61 100.31 5.36 -56.49 -0.30 100.00 16 15 O -0.98 -38.25 18.08 -127.65 -2.31 -40.56 16 16 O -0.99 -45.22 17.14 -127.65 -2.19 -47.41 16 17 C -0.57 -18.61 5.91 71.24 0.42 -18.19 16 18 C -0.16 -4.69 5.15 -19.82 -0.10 -4.80 16 19 C -0.08 -1.88 9.70 22.26 0.22 -1.66 16 20 C -0.12 -2.14 9.70 22.27 0.22 -1.93 16 21 C -0.05 -0.83 5.88 -19.87 -0.12 -0.95 16 22 C -0.11 -1.06 10.01 71.24 0.71 -0.34 16 23 C -0.16 -3.78 9.68 22.31 0.22 -3.56 16 24 C 0.08 2.54 7.24 22.38 0.16 2.70 16 25 F -0.15 -5.52 16.48 44.97 0.74 -4.78 16 26 H 0.05 1.99 7.23 -2.39 -0.02 1.97 16 27 H 0.05 2.31 7.38 -2.39 -0.02 2.30 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.05 2.58 6.27 -2.39 -0.01 2.57 16 30 H 0.04 1.80 7.46 -2.38 -0.02 1.78 16 31 H 0.26 15.20 6.03 -92.71 -0.56 14.64 16 32 H 0.42 15.37 8.43 -96.74 -0.82 14.55 16 33 H 0.13 4.69 6.94 -2.39 -0.02 4.68 16 34 H 0.17 4.50 8.08 -2.39 -0.02 4.48 16 35 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.09 0.55 8.09 -2.39 -0.02 0.53 16 39 H 0.08 0.65 8.09 -2.38 -0.02 0.64 16 40 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -70.92 347.72 1.22 -69.70 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.46 Total: 29.79 kcal Atomic # 6 Polarization: -60.71 SS G_CDS: 3.30 Total: -57.41 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -0.53 Total: -98.28 kcal Atomic # 8 Polarization: -83.47 SS G_CDS: -4.50 Total: -87.97 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.74 Total: -4.78 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.05 Total: 48.94 kcal Atomic # 16 Polarization: 100.31 SS G_CDS: -0.30 Total: 100.00 kcal Total: -70.92 1.22 -69.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192842570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.377 kcal (2) G-P(sol) polarization free energy of solvation -70.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds