Wall clock time and date at job start Tue Mar 31 2020 10:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47223 * 2 1 4 4 N 1.46503 * 109.47145 * 181.37358 * 3 2 1 5 5 C 1.36940 * 120.00336 * 273.43367 * 4 3 2 6 6 H 1.08001 * 119.99591 * 138.03741 * 5 4 3 7 7 C 1.38807 * 119.99955 * 318.03987 * 5 4 3 8 8 N 1.31621 * 119.99947 * 158.01082 * 7 5 4 9 9 Si 1.86796 * 120.00182 * 338.01252 * 7 5 4 10 10 H 1.48501 * 109.47269 * 95.55143 * 9 7 5 11 11 H 1.48505 * 109.47198 * 215.55649 * 9 7 5 12 12 H 1.48497 * 109.47159 * 335.55042 * 9 7 5 13 13 S 1.65605 * 119.99849 * 93.43877 * 4 3 2 14 14 O 1.42100 * 104.28066 * 153.92656 * 13 4 3 15 15 O 1.42097 * 104.27705 * 26.06892 * 13 4 3 16 16 C 1.81403 * 104.44876 * 270.00058 * 13 4 3 17 17 C 1.50696 * 109.47164 * 179.97438 * 16 13 4 18 18 C 1.38218 * 120.01205 * 89.99860 * 17 16 13 19 19 C 1.38223 * 120.02236 * 179.74229 * 18 17 16 20 20 C 1.38268 * 120.05499 * 0.25677 * 19 18 17 21 21 C 1.50695 * 119.99234 * 179.97438 * 20 19 18 22 22 C 1.38177 * 120.02399 * 359.97438 * 20 19 18 23 23 C 1.38446 * 120.01038 * 270.24911 * 17 16 13 24 24 F 1.35098 * 120.02705 * 0.02562 * 23 17 16 25 25 H 1.08995 * 109.47612 * 300.00124 * 1 2 3 26 26 H 1.09006 * 109.47114 * 60.00091 * 1 2 3 27 27 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47342 * 240.00267 * 2 1 3 29 29 H 1.09006 * 109.47114 * 119.99908 * 2 1 3 30 30 H 1.09005 * 109.47469 * 61.38164 * 3 2 1 31 31 H 1.08996 * 109.47665 * 301.37834 * 3 2 1 32 32 H 0.96995 * 120.00632 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47021 * 59.99352 * 16 13 4 34 34 H 1.09002 * 109.46788 * 300.00311 * 16 13 4 35 35 H 1.07996 * 119.98911 * 0.02562 * 18 17 16 36 36 H 1.07996 * 119.97353 * 180.27550 * 19 18 17 37 37 H 1.09002 * 109.47324 * 89.99801 * 21 20 19 38 38 H 1.09001 * 109.47363 * 210.00072 * 21 20 19 39 39 H 1.09003 * 109.46820 * 330.00356 * 21 20 19 40 40 H 1.07998 * 120.01439 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5046 1.4426 -0.0331 5 6 4.2159 1.3621 1.1343 6 1 5.0898 0.7301 1.1916 7 6 3.8138 2.0929 2.2438 8 7 4.1896 1.7200 3.4489 9 14 2.7392 3.6053 2.0267 10 1 1.3143 3.2311 2.2131 11 1 3.1177 4.6300 3.0328 12 1 2.9315 4.1574 0.6617 13 16 4.3000 1.5401 -1.4823 14 8 5.5542 2.1226 -1.1553 15 8 3.3843 2.2064 -2.3406 16 6 4.5148 -0.1859 -1.9978 17 6 5.2351 -0.2291 -3.3208 18 6 6.6156 -0.2893 -3.3547 19 6 7.2762 -0.3343 -4.5680 20 6 6.5575 -0.3138 -5.7490 21 6 7.2792 -0.3624 -7.0710 22 6 5.1776 -0.2488 -5.7176 23 6 4.5146 -0.2032 -4.5027 24 9 3.1655 -0.1387 -4.4707 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6970 1.9492 0.9021 31 1 1.6566 1.9634 -0.8773 32 1 3.9089 2.2308 4.2242 33 1 3.5380 -0.6586 -2.1006 34 1 5.0992 -0.7189 -1.2478 35 1 7.1780 -0.3058 -2.4329 36 1 8.3547 -0.3859 -4.5935 37 1 7.4052 -1.4005 -7.3783 38 1 6.6972 0.1710 -7.8226 39 1 8.2575 0.1073 -6.9683 40 1 4.6164 -0.2324 -6.6402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194655253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:06 Heat of formation + Delta-G solvation = -113.319655 kcal Electronic energy + Delta-G solvation = -25134.034625 eV Core-core repulsion = 21375.663027 eV Total energy + Delta-G solvation = -3758.371599 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.04834 -40.36438 -38.29900 -37.96907 -36.82911 -35.11843 -34.51822 -33.08503 -31.66593 -30.66648 -27.58680 -26.42696 -25.56072 -23.98825 -22.70013 -22.19444 -20.29989 -19.18828 -18.49195 -18.19112 -17.86867 -17.64769 -17.25133 -16.80901 -16.45292 -16.22488 -15.66222 -15.15354 -14.95346 -14.91842 -14.60795 -14.47247 -14.30992 -14.26718 -13.97024 -13.63503 -13.34694 -13.14351 -13.06851 -13.02320 -12.90562 -12.78797 -12.60548 -12.43346 -12.36974 -12.18708 -12.14659 -11.91824 -11.86265 -11.42173 -10.82025 -10.05260 -9.93371 -9.54694 -8.45720 -6.08795 -0.78187 0.07107 0.13040 1.18406 1.31239 1.41740 1.93927 2.24301 2.43365 2.78343 2.95688 3.08417 3.21318 3.28169 3.62860 3.83536 3.93748 4.03609 4.18884 4.20093 4.29679 4.32917 4.41469 4.56669 4.63476 4.72037 4.74101 4.87217 4.95291 4.99250 5.01686 5.10304 5.19152 5.22576 5.26493 5.33419 5.43655 5.54929 5.69897 5.81751 6.18383 7.11055 7.12129 8.68354 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.004775 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.051807 B = 5862.279401 C = 6539.313607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.097 3.903 4 N -0.881 5.881 5 C -0.301 4.301 6 H 0.083 0.917 7 C 0.035 3.965 8 N -0.900 5.900 9 Si 0.904 3.096 10 H -0.247 1.247 11 H -0.284 1.284 12 H -0.279 1.279 13 S 2.563 3.437 14 O -0.988 6.988 15 O -1.004 7.004 16 C -0.558 4.558 17 C -0.155 4.155 18 C -0.088 4.088 19 C -0.126 4.126 20 C -0.048 4.048 21 C -0.114 4.114 22 C -0.159 4.159 23 C 0.088 3.912 24 F -0.141 7.141 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.277 0.723 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 -8.279 -17.722 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.029 4.029 4 N -0.712 5.712 5 C -0.434 4.434 6 H 0.101 0.899 7 C -0.171 4.171 8 N -0.539 5.539 9 Si 0.730 3.270 10 H -0.172 1.172 11 H -0.210 1.210 12 H -0.204 1.204 13 S 2.667 3.333 14 O -0.978 6.978 15 O -0.994 6.994 16 C -0.688 4.688 17 C -0.158 4.158 18 C -0.107 4.107 19 C -0.144 4.144 20 C -0.049 4.049 21 C -0.170 4.170 22 C -0.178 4.178 23 C 0.068 3.932 24 F -0.120 7.120 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.165 0.835 36 H 0.185 0.815 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.663 -7.411 -18.000 19.537 hybrid contribution -0.865 0.335 0.899 1.292 sum 0.797 -7.076 -17.102 18.525 Atomic orbital electron populations 1.21729 0.93754 1.02960 1.02100 1.21927 0.97276 0.95787 1.02599 1.21772 0.80442 0.98783 1.01877 1.53026 1.11605 1.87622 1.18920 1.18453 1.12322 1.25199 0.87409 0.89892 1.25833 0.98172 0.98289 0.94793 1.69884 1.46572 1.39082 0.98371 0.86457 0.80740 0.81827 0.78009 1.17185 1.21012 1.20419 1.06659 0.73887 0.78689 0.74093 1.93447 1.45980 1.75437 1.82986 1.93427 1.64194 1.72726 1.69031 1.29364 1.10857 1.24839 1.03713 1.19282 0.95484 1.09679 0.91341 1.21401 0.91754 0.96578 1.01011 1.21546 1.02203 1.00162 0.90508 1.20333 0.92206 0.94641 0.97741 1.20945 1.00688 1.04234 0.91134 1.21370 0.95704 1.04300 0.96397 1.17940 0.76988 1.03276 0.95018 1.91489 1.29476 1.93640 1.97378 0.92904 0.91947 0.90523 0.91457 0.91531 0.92358 0.90382 0.91347 0.83018 0.82004 0.83482 0.81461 0.88808 0.90073 0.89428 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.91 71.98 0.71 -3.35 16 2 C -0.14 -4.71 6.25 30.59 0.19 -4.52 16 3 C 0.10 4.15 4.55 86.38 0.39 4.54 16 4 N -0.88 -42.37 2.31 -343.45 -0.79 -43.16 16 5 C -0.30 -16.39 9.18 84.03 0.77 -15.62 16 6 H 0.08 4.72 8.06 -2.91 -0.02 4.70 16 7 C 0.03 1.94 5.30 84.86 0.45 2.39 16 8 N -0.90 -51.95 13.97 21.65 0.30 -51.65 16 9 Si 0.90 44.61 25.23 68.60 1.73 46.34 16 10 H -0.25 -10.99 6.71 99.48 0.67 -10.32 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16 13 S 2.56 116.57 5.37 -56.49 -0.30 116.27 16 14 O -0.99 -51.40 17.22 -127.65 -2.20 -53.60 16 15 O -1.00 -48.62 16.54 -127.65 -2.11 -50.73 16 16 C -0.56 -18.96 6.12 71.23 0.44 -18.53 16 17 C -0.16 -4.90 5.15 -19.82 -0.10 -5.00 16 18 C -0.09 -2.37 9.70 22.26 0.22 -2.15 16 19 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 20 C -0.05 -0.90 5.88 -19.87 -0.12 -1.02 16 21 C -0.11 -1.14 10.01 71.23 0.71 -0.42 16 22 C -0.16 -3.61 9.68 22.31 0.22 -3.40 16 23 C 0.09 2.66 7.24 22.38 0.16 2.83 16 24 F -0.14 -4.65 16.48 44.97 0.74 -3.91 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.07 6.81 -2.39 -0.02 2.05 16 29 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.06 2.61 3.69 -2.38 -0.01 2.60 16 31 H 0.08 3.23 6.84 -2.39 -0.02 3.22 16 32 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.15 4.62 6.32 -2.39 -0.02 4.61 16 34 H 0.16 4.92 8.09 -2.39 -0.02 4.90 16 35 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 39 H 0.09 0.67 8.09 -2.39 -0.02 0.65 16 40 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -72.77 345.89 2.63 -70.14 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 1.01 Total: 16.88 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 4.26 Total: -46.57 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -0.49 Total: -94.81 kcal Atomic # 8 Polarization: -100.03 SS G_CDS: -4.31 Total: -104.34 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.74 Total: -3.91 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.73 Total: 46.34 kcal Atomic # 16 Polarization: 116.57 SS G_CDS: -0.30 Total: 116.27 kcal Total: -72.77 2.63 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194655253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.182 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds