Wall clock time and date at job start Tue Mar 31 2020 11:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46893 * 109.47308 * 2 1 4 4 C 1.46896 * 111.00378 * 75.11079 * 3 2 1 5 5 C 1.50698 * 109.47399 * 196.00940 * 4 3 2 6 6 H 1.08003 * 119.99830 * 5.11772 * 5 4 3 7 7 C 1.37876 * 119.99798 * 185.11624 * 5 4 3 8 8 N 1.31516 * 119.99719 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00300 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47227 * 90.00155 * 9 7 5 11 11 H 1.48503 * 109.47255 * 210.00094 * 9 7 5 12 12 H 1.48504 * 109.47054 * 329.99754 * 9 7 5 13 13 C 1.37723 * 110.99842 * 199.06536 * 3 2 1 14 14 C 1.38154 * 120.63935 * 235.76227 * 13 3 2 15 15 C 1.39260 * 119.01116 * 179.78031 * 14 13 3 16 16 C 1.50703 * 119.77985 * 180.25154 * 15 14 13 17 17 F 1.39908 * 109.47044 * 185.25202 * 16 15 14 18 18 F 1.39899 * 109.47311 * 305.25085 * 16 15 14 19 19 F 1.39902 * 109.47238 * 65.25459 * 16 15 14 20 20 N 1.31650 * 120.43643 * 0.50618 * 15 14 13 21 21 C 1.33793 * 121.21979 * 359.74460 * 20 15 14 22 22 N 1.32863 * 132.41072 * 180.02562 * 21 20 15 23 23 C 1.32730 * 109.74033 * 179.97438 * 22 21 20 24 24 N 1.31073 * 109.62415 * 359.97438 * 23 22 21 25 25 N 1.36513 * 120.64194 * 56.04813 * 13 3 2 26 26 H 1.09005 * 109.46369 * 57.40032 * 1 2 3 27 27 H 1.08998 * 109.47388 * 177.39488 * 1 2 3 28 28 H 1.08994 * 109.47182 * 297.40007 * 1 2 3 29 29 H 1.09004 * 109.47334 * 239.99438 * 2 1 3 30 30 H 1.09005 * 109.46795 * 120.00281 * 2 1 3 31 31 H 1.09003 * 109.46970 * 316.01222 * 4 3 2 32 32 H 1.08996 * 109.47128 * 76.00830 * 4 3 2 33 33 H 0.96999 * 120.00414 * 180.02562 * 8 7 5 34 34 H 1.08002 * 120.49394 * 0.02562 * 14 13 3 35 35 H 1.07994 * 125.18800 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8630 1.9988 1.3253 5 6 1.9960 3.4950 1.2048 6 1 2.0959 3.9516 0.2312 7 6 1.9901 4.2810 2.3376 8 7 2.1057 5.5869 2.2324 9 14 1.8180 3.4913 4.0216 10 1 3.1648 3.1659 4.5557 11 1 1.1347 4.4343 4.9431 12 1 1.0176 2.2459 3.9048 13 6 3.3300 1.4451 -0.4200 14 6 4.2970 2.0330 0.3724 15 6 5.6123 2.0711 -0.0836 16 6 6.6821 2.7032 0.7691 17 9 7.8877 2.7317 0.0597 18 9 6.3044 4.0091 1.0993 19 9 6.8476 1.9555 1.9399 20 7 5.9264 1.5632 -1.2569 21 6 4.9998 0.9954 -2.0373 22 7 5.0647 0.4244 -3.2352 23 6 3.8591 0.0036 -3.5972 24 7 2.9928 0.2867 -2.6552 25 7 3.6972 0.9301 -1.6298 26 1 -0.3632 0.5537 -0.8658 27 1 -0.3634 -1.0266 -0.0467 28 1 -0.3633 0.4729 0.9123 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.8796 1.7525 1.7258 32 1 2.6339 1.6183 1.9954 33 1 2.1019 6.1399 3.0293 34 1 4.0376 2.4532 1.3329 35 1 3.6272 -0.4960 -4.5262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267154925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:55 Heat of formation + Delta-G solvation = 16.744346 kcal Electronic energy + Delta-G solvation = -27373.958065 eV Core-core repulsion = 22996.138486 eV Total energy + Delta-G solvation = -4377.819579 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.01918 -47.54305 -47.45451 -42.84525 -39.53241 -37.76708 -33.84248 -33.04385 -31.79007 -31.23839 -29.49329 -28.15048 -27.02495 -24.19379 -23.09719 -22.78598 -22.18327 -20.55857 -19.00733 -18.62940 -18.39830 -17.73369 -17.36417 -17.22141 -16.41930 -15.82733 -14.98417 -14.85908 -14.53387 -14.38803 -14.19641 -14.07366 -13.90793 -13.89305 -13.60754 -13.56603 -13.18288 -12.77962 -12.75665 -12.56895 -12.33362 -12.10829 -11.84062 -11.64039 -11.22988 -10.97492 -10.69732 -10.28954 -10.10456 -10.04274 -9.81339 -9.73976 -9.29929 -8.89714 -7.89724 -6.39688 -4.44196 0.29666 0.84065 1.79883 2.35152 2.61255 3.03814 3.09858 3.14474 3.23707 3.35261 3.54900 3.80769 4.08422 4.24195 4.35374 4.44834 4.76808 4.88474 4.98690 5.11727 5.16435 5.38405 5.52872 5.61209 5.68945 5.91363 5.98368 6.08760 6.19311 6.26494 6.32835 6.44102 6.89231 7.02357 7.20985 7.42209 7.98002 8.13471 8.66059 9.13983 10.71747 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.007863 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.554206 B = 3559.918738 C = 5595.757618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 N -0.455 5.455 4 C 0.152 3.848 5 C -0.539 4.539 6 H 0.085 0.915 7 C 0.084 3.916 8 N -0.874 5.874 9 Si 0.863 3.137 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.265 1.265 13 C 0.434 3.566 14 C -0.231 4.231 15 C 0.163 3.837 16 C 0.529 3.471 17 F -0.160 7.160 18 F -0.151 7.151 19 F -0.166 7.166 20 N -0.459 5.459 21 C 0.466 3.534 22 N -0.533 5.533 23 C 0.247 3.753 24 N -0.333 5.333 25 N -0.328 5.328 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.018 0.982 33 H 0.271 0.729 34 H 0.202 0.798 35 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -10.518 -1.847 11.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.167 5.167 4 C 0.029 3.971 5 C -0.577 4.577 6 H 0.103 0.897 7 C -0.122 4.122 8 N -0.510 5.510 9 Si 0.689 3.311 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.189 1.189 13 C 0.211 3.789 14 C -0.262 4.262 15 C 0.002 3.998 16 C 0.473 3.527 17 F -0.141 7.141 18 F -0.132 7.132 19 F -0.147 7.147 20 N -0.178 5.178 21 C 0.106 3.894 22 N -0.267 5.267 23 C -0.054 4.054 24 N -0.165 5.165 25 N -0.111 5.111 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.219 0.781 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.768 -10.417 -2.868 11.154 hybrid contribution -0.433 -0.189 1.725 1.788 sum 2.335 -10.606 -1.143 10.920 Atomic orbital electron populations 1.21758 0.93182 1.01681 1.03522 1.22430 0.98080 0.84997 1.02491 1.57923 1.10409 1.17524 1.30804 1.20811 0.98497 0.97167 0.80637 1.20844 1.53269 0.87434 0.96123 0.89742 1.24814 0.93997 0.94709 0.98727 1.69849 1.47120 1.03876 1.30130 0.87049 0.79464 0.79956 0.84663 1.19269 1.20349 1.18932 1.19181 0.90068 0.88167 0.81500 1.22083 0.89042 1.09824 1.05283 1.21298 0.93102 0.94221 0.91228 1.17541 0.80144 0.77009 0.77962 1.93251 1.46547 1.96237 1.78053 1.93344 1.91033 1.36274 1.92584 1.93245 1.95640 1.76491 1.49324 1.67324 1.31378 1.14743 1.04344 1.22376 0.79121 0.95676 0.92253 1.70929 1.23906 1.23176 1.08653 1.26263 0.85349 0.95039 0.98791 1.78443 1.17865 1.22192 0.97968 1.48876 1.10575 1.38668 1.12997 0.91312 0.91896 0.91811 0.89110 0.92885 0.92418 0.96469 0.91859 0.78085 0.75349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.98 37.16 0.37 -1.51 16 2 C 0.04 0.66 5.57 -3.83 -0.02 0.64 16 3 N -0.46 -8.44 4.45 -174.08 -0.77 -9.21 16 4 C 0.15 3.03 3.18 -4.98 -0.02 3.01 16 5 C -0.54 -13.10 7.58 -34.44 -0.26 -13.36 16 6 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.87 -23.91 13.96 55.43 0.77 -23.13 16 9 Si 0.86 18.20 27.37 -169.99 -4.65 13.54 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.26 -5.21 6.69 56.52 0.38 -4.84 16 13 C 0.43 8.21 6.26 -152.97 -0.96 7.26 16 14 C -0.23 -4.33 7.75 -39.23 -0.30 -4.63 16 15 C 0.16 2.93 6.29 -82.29 -0.52 2.41 16 16 C 0.53 8.69 3.32 36.01 0.12 8.81 16 17 F -0.16 -2.57 16.86 2.25 0.04 -2.53 16 18 F -0.15 -2.66 17.16 2.25 0.04 -2.63 16 19 F -0.17 -2.52 17.29 2.25 0.04 -2.48 16 20 N -0.46 -8.72 9.86 -10.18 -0.10 -8.82 16 21 C 0.47 8.89 8.99 -323.15 -2.91 5.99 16 22 N -0.53 -9.39 11.26 -15.66 -0.18 -9.56 16 23 C 0.25 3.56 12.98 -91.96 -1.19 2.36 16 24 N -0.33 -5.55 10.92 29.26 0.32 -5.24 16 25 N -0.33 -6.09 3.65 -12.98 -0.05 -6.14 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.86 6.79 -51.93 -0.35 0.51 16 29 H 0.09 1.37 5.81 -51.93 -0.30 1.07 16 30 H 0.05 0.72 8.01 -51.93 -0.42 0.30 16 31 H 0.06 1.12 5.94 -51.93 -0.31 0.81 16 32 H 0.02 0.33 5.69 -51.93 -0.30 0.04 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.20 3.91 5.02 -52.49 -0.26 3.65 16 35 H 0.23 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -28.33 309.05 -8.46 -36.79 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -2.79 Total: 1.77 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: -5.79 Total: 12.97 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.01 Total: -62.10 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.12 Total: -7.63 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -4.65 Total: 13.54 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.33 -8.46 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267154925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.536 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds