Wall clock time and date at job start Tue Mar 31 2020 11:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46893 * 109.47308 * 2 1 4 4 C 1.46896 * 111.00378 * 75.11079 * 3 2 1 5 5 C 1.50698 * 109.47399 * 196.00940 * 4 3 2 6 6 H 1.08003 * 119.99830 * 5.11772 * 5 4 3 7 7 C 1.37876 * 119.99798 * 185.11624 * 5 4 3 8 8 N 1.31516 * 119.99719 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00300 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47227 * 90.00155 * 9 7 5 11 11 H 1.48503 * 109.47255 * 210.00094 * 9 7 5 12 12 H 1.48504 * 109.47054 * 329.99754 * 9 7 5 13 13 C 1.37723 * 110.99842 * 199.06536 * 3 2 1 14 14 C 1.38154 * 120.63935 * 235.76227 * 13 3 2 15 15 C 1.39260 * 119.01116 * 179.78031 * 14 13 3 16 16 C 1.50703 * 119.77985 * 180.25154 * 15 14 13 17 17 F 1.39908 * 109.47044 * 185.25202 * 16 15 14 18 18 F 1.39899 * 109.47311 * 305.25085 * 16 15 14 19 19 F 1.39902 * 109.47238 * 65.25459 * 16 15 14 20 20 N 1.31650 * 120.43643 * 0.50618 * 15 14 13 21 21 C 1.33793 * 121.21979 * 359.74460 * 20 15 14 22 22 N 1.32863 * 132.41072 * 180.02562 * 21 20 15 23 23 C 1.32730 * 109.74033 * 179.97438 * 22 21 20 24 24 N 1.31073 * 109.62415 * 359.97438 * 23 22 21 25 25 N 1.36513 * 120.64194 * 56.04813 * 13 3 2 26 26 H 1.09005 * 109.46369 * 57.40032 * 1 2 3 27 27 H 1.08998 * 109.47388 * 177.39488 * 1 2 3 28 28 H 1.08994 * 109.47182 * 297.40007 * 1 2 3 29 29 H 1.09004 * 109.47334 * 239.99438 * 2 1 3 30 30 H 1.09005 * 109.46795 * 120.00281 * 2 1 3 31 31 H 1.09003 * 109.46970 * 316.01222 * 4 3 2 32 32 H 1.08996 * 109.47128 * 76.00830 * 4 3 2 33 33 H 0.96999 * 120.00414 * 180.02562 * 8 7 5 34 34 H 1.08002 * 120.49394 * 0.02562 * 14 13 3 35 35 H 1.07994 * 125.18800 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8630 1.9988 1.3253 5 6 1.9960 3.4950 1.2048 6 1 2.0959 3.9516 0.2312 7 6 1.9901 4.2810 2.3376 8 7 2.1057 5.5869 2.2324 9 14 1.8180 3.4913 4.0216 10 1 3.1648 3.1659 4.5557 11 1 1.1347 4.4343 4.9431 12 1 1.0176 2.2459 3.9048 13 6 3.3300 1.4451 -0.4200 14 6 4.2970 2.0330 0.3724 15 6 5.6123 2.0711 -0.0836 16 6 6.6821 2.7032 0.7691 17 9 7.8877 2.7317 0.0597 18 9 6.3044 4.0091 1.0993 19 9 6.8476 1.9555 1.9399 20 7 5.9264 1.5632 -1.2569 21 6 4.9998 0.9954 -2.0373 22 7 5.0647 0.4244 -3.2352 23 6 3.8591 0.0036 -3.5972 24 7 2.9928 0.2867 -2.6552 25 7 3.6972 0.9301 -1.6298 26 1 -0.3632 0.5537 -0.8658 27 1 -0.3634 -1.0266 -0.0467 28 1 -0.3633 0.4729 0.9123 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.8796 1.7525 1.7258 32 1 2.6339 1.6183 1.9954 33 1 2.1019 6.1399 3.0293 34 1 4.0376 2.4532 1.3329 35 1 3.6272 -0.4960 -4.5262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267154925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:55 Heat of formation + Delta-G solvation = 2.632098 kcal Electronic energy + Delta-G solvation = -27374.570018 eV Core-core repulsion = 22996.138486 eV Total energy + Delta-G solvation = -4378.431532 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.35779 -48.86365 -48.80584 -44.20201 -40.92009 -39.15929 -35.34178 -34.69935 -33.18831 -32.56382 -30.93554 -29.71113 -28.36736 -25.68931 -24.40500 -24.31839 -23.43238 -21.98673 -20.38009 -19.98753 -19.73904 -19.24677 -18.92344 -18.71285 -17.81529 -17.31638 -16.37374 -16.22911 -15.95147 -15.71887 -15.52745 -15.44716 -15.26328 -15.22638 -14.94096 -14.91320 -14.59281 -14.50568 -14.14663 -13.93215 -13.65168 -13.47269 -13.12775 -12.90061 -12.70833 -12.52256 -11.99545 -11.91047 -11.72735 -11.47305 -11.38605 -11.12460 -10.83642 -10.64346 -9.30894 -8.31628 -6.40850 -1.10966 -0.55328 0.42103 0.98861 1.33856 1.40452 1.41690 1.50187 1.87748 1.97855 2.18935 2.31933 2.46191 2.88813 3.01755 3.05565 3.10692 3.55907 3.68498 3.83696 4.03511 4.08104 4.19349 4.38070 4.41865 4.51304 4.75257 4.83018 4.92431 4.98579 5.13946 5.21924 5.35070 5.51915 5.65718 6.00728 6.25063 6.65101 6.66740 7.21340 8.83858 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.007863 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.554206 B = 3559.918738 C = 5595.757618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.041 3.959 3 N -0.467 5.467 4 C 0.159 3.841 5 C -0.532 4.532 6 H 0.032 0.968 7 C 0.029 3.971 8 N -0.931 5.931 9 Si 0.926 3.074 10 H -0.256 1.256 11 H -0.286 1.286 12 H -0.234 1.234 13 C 0.428 3.572 14 C -0.243 4.243 15 C 0.165 3.835 16 C 0.537 3.463 17 F -0.156 7.156 18 F -0.160 7.160 19 F -0.155 7.155 20 N -0.472 5.472 21 C 0.449 3.551 22 N -0.546 5.546 23 C 0.262 3.738 24 N -0.345 5.345 25 N -0.335 5.335 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.271 0.729 34 H 0.193 0.807 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -13.176 -1.479 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 N -0.179 5.179 4 C 0.035 3.965 5 C -0.570 4.570 6 H 0.050 0.950 7 C -0.172 4.172 8 N -0.569 5.569 9 Si 0.748 3.252 10 H -0.181 1.181 11 H -0.211 1.211 12 H -0.157 1.157 13 C 0.205 3.795 14 C -0.274 4.274 15 C 0.003 3.997 16 C 0.481 3.519 17 F -0.137 7.137 18 F -0.141 7.141 19 F -0.136 7.136 20 N -0.191 5.191 21 C 0.088 3.912 22 N -0.280 5.280 23 C -0.038 4.038 24 N -0.175 5.175 25 N -0.118 5.118 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.210 0.790 35 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 2.202 -13.121 -2.526 13.542 hybrid contribution -0.268 0.610 1.414 1.563 sum 1.935 -12.512 -1.112 12.709 Atomic orbital electron populations 1.21754 0.91714 1.03482 1.02664 1.22631 0.99217 0.82934 1.03400 1.57936 1.10312 1.19617 1.30010 1.20647 0.99711 0.94186 0.81964 1.20883 1.52293 0.90014 0.93825 0.94958 1.25670 0.93528 0.94902 1.03051 1.70017 1.49645 1.05907 1.31284 0.86037 0.80302 0.79920 0.78967 1.18069 1.21150 1.15666 1.19270 0.90257 0.88136 0.81866 1.21965 0.89581 1.10650 1.05240 1.21413 0.93271 0.93856 0.91146 1.17340 0.79891 0.76573 0.78059 1.93256 1.46215 1.96192 1.78060 1.93329 1.91166 1.36997 1.92653 1.93262 1.95556 1.76161 1.48671 1.67331 1.31813 1.15337 1.04655 1.22660 0.79457 0.96172 0.92875 1.70990 1.25415 1.23500 1.08140 1.27341 0.83691 0.93270 0.99543 1.78448 1.18465 1.22518 0.98102 1.48933 1.10612 1.39036 1.13175 0.92758 0.88709 0.92072 0.89207 0.90884 0.90915 0.94532 0.92004 0.78993 0.70152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.98 71.98 0.72 -2.53 16 2 C 0.04 1.14 5.57 86.31 0.48 1.62 16 3 N -0.47 -16.87 4.45 -704.67 -3.14 -20.00 16 4 C 0.16 6.11 3.18 85.56 0.27 6.38 16 5 C -0.53 -26.33 7.58 25.60 0.19 -26.14 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.03 1.48 5.47 84.65 0.46 1.94 16 8 N -0.93 -52.68 13.96 21.45 0.30 -52.38 16 9 Si 0.93 36.56 27.37 68.60 1.88 38.44 16 10 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 11 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.23 -8.01 6.69 99.48 0.67 -7.35 16 13 C 0.43 16.06 6.26 131.98 0.83 16.89 16 14 C -0.24 -9.13 7.75 22.50 0.17 -8.96 16 15 C 0.16 5.94 6.29 42.83 0.27 6.21 16 16 C 0.54 17.59 3.32 71.24 0.24 17.83 16 17 F -0.16 -4.96 16.86 44.97 0.76 -4.21 16 18 F -0.16 -5.74 17.16 44.97 0.77 -4.97 16 19 F -0.16 -4.60 17.29 44.97 0.78 -3.82 16 20 N -0.47 -17.88 9.86 -186.12 -1.83 -19.71 16 21 C 0.45 16.85 8.99 261.61 2.35 19.21 16 22 N -0.55 -18.39 11.26 -203.46 -2.29 -20.68 16 23 C 0.26 6.84 12.98 180.82 2.35 9.19 16 24 N -0.34 -10.86 10.92 -61.35 -0.67 -11.53 16 25 N -0.33 -12.17 3.65 -194.97 -0.71 -12.88 16 26 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.46 6.79 -2.39 -0.02 1.45 16 29 H 0.09 2.51 5.81 -2.38 -0.01 2.50 16 30 H 0.07 1.73 8.01 -2.38 -0.02 1.71 16 31 H 0.07 2.61 5.94 -2.39 -0.01 2.60 16 32 H 0.04 1.30 5.69 -2.39 -0.01 1.29 16 33 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.19 7.52 5.02 -2.91 -0.01 7.51 16 35 H 0.28 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -63.36 309.05 5.31 -58.05 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.13 Total: 12.06 kcal Atomic # 6 Polarization: 33.30 SS G_CDS: 8.34 Total: 41.63 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -8.34 Total: -137.19 kcal Atomic # 9 Polarization: -15.30 SS G_CDS: 2.31 Total: -12.99 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 1.88 Total: 38.44 kcal Total: -63.36 5.31 -58.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267154925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.681 kcal (2) G-P(sol) polarization free energy of solvation -63.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds