Wall clock time and date at job start Tue Mar 31 2020 10:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.46936 * 2 1 4 4 C 1.50706 * 109.46779 * 240.00287 * 2 1 3 5 5 C 1.33381 * 125.20162 * 107.73172 * 4 2 1 6 6 C 1.38430 * 114.92145 * 179.97438 * 5 4 2 7 7 C 1.33382 * 114.91797 * 359.97438 * 6 5 4 8 8 S 1.75885 * 109.59764 * 359.75726 * 7 6 5 9 9 N 1.46499 * 109.47479 * 120.00421 * 2 1 3 10 10 C 1.46502 * 119.99760 * 54.25340 * 9 2 1 11 11 C 1.34773 * 120.00265 * 234.25942 * 9 2 1 12 12 O 1.21585 * 119.99593 * 355.75117 * 11 9 2 13 13 C 1.47636 * 120.00194 * 175.75377 * 11 9 2 14 14 C 1.40013 * 119.89458 * 221.72827 * 13 11 9 15 15 C 1.36317 * 120.10782 * 180.23128 * 14 13 11 16 16 C 1.40889 * 119.88762 * 359.52426 * 15 14 13 17 17 C 1.41116 * 120.10215 * 180.22908 * 16 15 14 18 18 H 1.08002 * 119.99921 * 206.99113 * 17 16 15 19 19 C 1.40222 * 119.99902 * 26.98540 * 17 16 15 20 20 N 1.30645 * 119.99912 * 12.88486 * 19 17 16 21 21 Si 1.86807 * 120.00241 * 192.87891 * 19 17 16 22 22 H 1.48506 * 109.46649 * 90.00290 * 21 19 17 23 23 H 1.48496 * 109.47414 * 210.00308 * 21 19 17 24 24 H 1.48503 * 109.46707 * 330.00650 * 21 19 17 25 25 C 1.40888 * 119.79874 * 0.47629 * 16 15 14 26 26 C 1.36316 * 119.88561 * 359.75433 * 25 16 15 27 27 H 1.08998 * 109.46454 * 299.99285 * 1 2 3 28 28 H 1.08996 * 109.47014 * 59.99655 * 1 2 3 29 29 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.08000 * 122.54174 * 359.97438 * 5 4 2 31 31 H 1.08001 * 122.53974 * 179.97438 * 6 5 4 32 32 H 1.08000 * 125.20084 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.47011 * 208.73733 * 10 9 2 34 34 H 1.08999 * 109.47591 * 328.73637 * 10 9 2 35 35 H 1.09002 * 109.46893 * 88.73797 * 10 9 2 36 36 H 1.08001 * 119.94646 * 359.96022 * 14 13 11 37 37 H 1.08000 * 120.05669 * 179.74733 * 15 14 13 38 38 H 0.97005 * 120.00135 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.05905 * 179.73093 * 25 16 15 40 40 H 1.08004 * 119.94477 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 2.6015 -0.1184 -2.2816 6 6 2.9850 -0.9769 -3.2976 7 6 2.7277 -2.2659 -3.0713 8 16 1.9655 -2.4477 -1.4966 9 7 2.0185 -0.6907 1.1961 10 6 1.5638 -2.0513 1.4932 11 6 2.8859 -0.0744 2.0232 12 8 3.3228 1.0237 1.7373 13 6 3.3056 -0.7325 3.2763 14 6 3.4112 0.0148 4.4556 15 6 3.8029 -0.5874 5.6141 16 6 4.0919 -1.9663 5.6256 17 6 4.4931 -2.5954 6.8234 18 1 5.1128 -3.4792 6.7878 19 6 4.0874 -2.0728 8.0597 20 7 3.1454 -1.1690 8.1094 21 14 4.8936 -2.6692 9.6358 22 1 6.0705 -1.8171 9.9427 23 1 3.9183 -2.5870 10.7526 24 1 5.3329 -4.0774 9.4648 25 6 3.9843 -2.7142 4.4365 26 6 3.5964 -2.1021 3.2819 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.7518 0.9497 -2.3359 31 1 3.4569 -0.6292 -4.2048 32 1 2.9566 -3.0748 -3.7493 33 1 1.5813 -2.2130 2.5710 34 1 0.5475 -2.1840 1.1223 35 1 2.2245 -2.7693 1.0072 36 1 3.1862 1.0711 4.4465 37 1 3.8880 -0.0093 6.5224 38 1 2.8644 -0.8077 8.9647 39 1 4.2091 -3.7705 4.4395 40 1 3.5140 -2.6744 2.3696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270203985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:05 Heat of formation + Delta-G solvation = 8.916135 kcal Electronic energy + Delta-G solvation = -23200.054032 eV Core-core repulsion = 19877.752199 eV Total energy + Delta-G solvation = -3322.301832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24817 -39.25538 -38.60548 -37.01467 -35.69556 -33.31162 -31.79807 -31.14509 -29.44133 -28.08838 -27.65687 -25.31553 -23.99677 -22.95814 -22.36255 -20.57159 -20.19164 -19.35866 -18.22225 -18.07073 -17.24036 -16.98043 -16.56496 -16.10525 -15.77957 -15.36910 -15.13843 -14.68463 -14.47810 -14.16863 -14.06220 -13.81990 -13.74954 -13.57237 -13.43976 -13.29382 -13.06592 -12.95034 -12.82838 -12.72753 -12.59070 -12.31976 -12.12613 -11.73821 -11.56301 -11.35641 -11.13750 -10.73205 -9.81462 -9.62065 -9.52338 -9.33733 -9.32611 -8.71735 -6.46599 0.04482 0.53259 0.71361 1.11145 1.14530 1.39446 1.44120 1.53591 1.77720 1.94270 2.16527 2.19806 2.72588 3.56451 3.66348 3.93034 4.11412 4.13011 4.24378 4.30103 4.38250 4.39471 4.59790 4.60622 4.67654 4.75781 4.81947 4.92965 4.98181 5.04485 5.14191 5.19704 5.21809 5.28067 5.39009 5.51196 5.60589 5.63346 5.78206 5.98422 6.02467 6.22324 6.41052 6.58601 6.81089 6.90988 7.26236 8.22486 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.003010 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.435144 B = 9301.115061 C = 9670.473474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.203 3.797 3 H 0.092 0.908 4 C -0.201 4.201 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.220 4.220 8 S 0.113 5.887 9 N -0.605 5.605 10 C 0.065 3.935 11 C 0.577 3.423 12 O -0.597 6.597 13 C -0.279 4.279 14 C -0.056 4.056 15 C -0.194 4.194 16 C 0.100 3.900 17 C -0.477 4.477 18 H 0.088 0.912 19 C 0.033 3.967 20 N -0.811 5.811 21 Si 0.988 3.012 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.253 1.253 25 C -0.241 4.241 26 C -0.044 4.044 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.160 0.840 32 H 0.187 0.813 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.293 0.707 39 H 0.115 0.885 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 -4.127 -15.721 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.098 3.902 3 H 0.110 0.890 4 C -0.319 4.319 5 C -0.172 4.172 6 C -0.173 4.173 7 C -0.356 4.356 8 S 0.377 5.623 9 N -0.337 5.337 10 C -0.078 4.078 11 C 0.370 3.630 12 O -0.480 6.480 13 C -0.283 4.283 14 C -0.075 4.075 15 C -0.213 4.213 16 C 0.097 3.903 17 C -0.505 4.505 18 H 0.106 0.894 19 C -0.184 4.184 20 N -0.436 5.436 21 Si 0.808 3.192 22 H -0.189 1.189 23 H -0.192 1.192 24 H -0.176 1.176 25 C -0.260 4.260 26 C -0.062 4.062 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.177 0.823 32 H 0.204 0.796 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.023 -4.681 -14.902 16.741 hybrid contribution 0.882 1.378 0.059 1.637 sum -5.141 -3.303 -14.843 16.051 Atomic orbital electron populations 1.22124 0.91522 1.03664 1.03449 1.19490 0.95514 0.95664 0.79536 0.88971 1.24933 1.08749 0.97654 1.00595 1.20384 1.00729 1.02062 0.93988 1.20367 1.03400 0.92417 1.01152 1.26112 1.07418 1.01355 1.00671 1.84197 1.60319 1.03967 1.13834 1.47838 1.45028 1.17023 1.23771 1.22273 1.00937 0.81521 1.03025 1.18639 0.77073 0.83971 0.83280 1.90618 1.57782 1.23342 1.76293 1.19059 1.21008 0.95422 0.92842 1.20460 0.97166 0.97369 0.92533 1.20970 1.08206 0.95377 0.96756 1.18113 0.87138 0.91602 0.93409 1.20089 1.28033 1.11494 0.90920 0.89386 1.26938 0.93359 0.93470 1.04632 1.69779 1.21404 1.22467 1.29908 0.85101 0.78664 0.80007 0.75405 1.18853 1.19163 1.17639 1.20950 1.12262 0.99142 0.93647 1.20793 0.95599 0.92215 0.97623 0.91993 0.89303 0.90768 0.84052 0.82267 0.79579 0.90100 0.89039 0.91409 0.89240 0.87542 0.89623 0.86737 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.03 71.98 0.65 -2.55 16 2 C 0.20 5.70 3.08 44.25 0.14 5.84 16 3 H 0.09 3.00 6.90 -2.39 -0.02 2.98 16 4 C -0.20 -5.05 5.39 24.59 0.13 -4.91 16 5 C -0.14 -3.27 10.02 21.22 0.21 -3.05 16 6 C -0.14 -2.76 10.18 21.22 0.22 -2.54 16 7 C -0.22 -3.99 11.23 66.72 0.75 -3.24 16 8 S 0.11 2.38 20.39 -56.49 -1.15 1.23 16 9 N -0.61 -20.00 2.75 -830.42 -2.29 -22.29 16 10 C 0.06 1.77 7.25 127.77 0.93 2.69 16 11 C 0.58 24.75 7.31 86.73 0.63 25.38 16 12 O -0.60 -29.24 16.29 -3.98 -0.06 -29.30 16 13 C -0.28 -12.81 5.17 -19.94 -0.10 -12.91 16 14 C -0.06 -2.81 9.58 22.25 0.21 -2.60 16 15 C -0.19 -10.27 8.61 22.47 0.19 -10.08 16 16 C 0.10 5.21 5.57 -21.28 -0.12 5.09 16 17 C -0.48 -24.18 9.06 23.46 0.21 -23.97 16 18 H 0.09 4.20 7.88 -2.91 -0.02 4.18 16 19 C 0.03 1.58 5.22 85.35 0.45 2.03 16 20 N -0.81 -40.55 10.82 21.87 0.24 -40.32 16 21 Si 0.99 35.85 29.58 68.60 2.03 37.88 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 23 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 24 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 25 C -0.24 -11.04 9.73 22.47 0.22 -10.82 16 26 C -0.04 -1.84 7.42 22.25 0.17 -1.68 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.39 6.52 -2.39 -0.02 1.38 16 30 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.19 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.08 2.54 5.51 -2.38 -0.01 2.52 16 34 H 0.09 1.97 6.15 -2.39 -0.01 1.95 16 35 H 0.07 1.70 5.82 -2.39 -0.01 1.69 16 36 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.11 5.89 6.14 -2.91 -0.02 5.87 16 38 H 0.29 13.17 8.29 -92.70 -0.77 12.40 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.13 4.52 5.72 -2.91 -0.02 4.50 16 Total: -1.00 -63.08 340.51 4.71 -58.37 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 1.06 Total: 31.75 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.88 Total: -37.32 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -2.05 Total: -62.60 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.06 Total: -29.30 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.15 Total: 1.23 kcal Total: -63.08 4.71 -58.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270203985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.284 kcal (2) G-P(sol) polarization free energy of solvation -63.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds