Wall clock time and date at job start Tue Mar 31 2020 11:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38139 * 119.99904 * 359.72690 * 3 2 1 5 5 C 1.39738 * 119.84827 * 179.74993 * 4 3 2 6 6 C 1.47601 * 120.06980 * 180.28142 * 5 4 3 7 7 O 1.21588 * 120.00328 * 0.26470 * 6 5 4 8 8 N 1.34783 * 119.99992 * 180.27169 * 6 5 4 9 9 C 1.46502 * 120.00125 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46854 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47005 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00060 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00210 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00038 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00177 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46891 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47106 * 119.99869 * 15 13 11 18 18 H 1.48492 * 109.47008 * 240.00105 * 15 13 11 19 19 C 1.39701 * 119.85375 * 0.54066 * 5 4 3 20 20 C 1.37783 * 120.00789 * 359.71588 * 19 5 4 21 21 C 1.38839 * 120.14823 * 0.02562 * 20 19 5 22 22 O 1.35797 * 119.92559 * 179.97438 * 21 20 19 23 23 C 1.42893 * 117.00362 * 0.02562 * 22 21 20 24 24 F 1.39898 * 109.47494 * 300.00208 * 23 22 21 25 25 F 1.39902 * 109.46922 * 60.00318 * 23 22 21 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 29 29 H 1.07995 * 120.07748 * 359.97438 * 4 3 2 30 30 H 0.96999 * 119.99549 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.46907 * 300.00089 * 9 8 6 32 32 H 1.09000 * 109.46997 * 59.99944 * 9 8 6 33 33 H 1.08996 * 109.47287 * 300.00132 * 10 9 8 34 34 H 1.09000 * 109.47017 * 60.00382 * 10 9 8 35 35 H 0.96996 * 119.99962 * 180.02562 * 14 13 11 36 36 H 1.08004 * 119.99561 * 179.68144 * 19 5 4 37 37 H 1.07996 * 119.92874 * 179.97438 * 20 19 5 38 38 H 1.09003 * 109.47152 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2942 2.3703 -0.0057 5 6 1.9319 3.6137 -0.0004 6 6 1.1329 4.8547 -0.0002 7 8 -0.0816 4.7958 0.0002 8 7 1.7494 6.0532 -0.0006 9 6 0.9563 7.2850 -0.0009 10 6 1.8931 8.4946 -0.0007 11 6 1.0773 9.7617 -0.0017 12 1 -0.0014 9.7094 -0.0020 13 6 1.7081 10.9878 -0.0023 14 7 3.0217 11.0515 -0.0014 15 14 0.6968 12.5584 -0.0028 16 1 -0.7483 12.2166 -0.0019 17 1 1.0175 13.3540 1.2094 18 1 1.0173 13.3530 -1.2156 19 6 3.3274 3.6795 -0.0008 20 6 4.0719 2.5202 -0.0005 21 6 3.4386 1.2847 -0.0003 22 8 4.1768 0.1449 -0.0005 23 6 5.5981 0.2925 -0.0003 24 9 5.9940 0.9970 -1.1423 25 9 5.9937 0.9963 1.1422 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 0.2157 2.3153 -0.0106 30 1 2.7183 6.1001 -0.0007 31 1 0.3276 7.3120 -0.8909 32 1 0.3276 7.3126 0.8891 33 1 2.5215 8.4674 0.8894 34 1 2.5221 8.4672 -0.8905 35 1 3.4654 11.9140 -0.0014 36 1 3.8226 4.6393 -0.0019 37 1 5.1506 2.5726 -0.0012 38 1 6.0656 -0.6922 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273034930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:08 Heat of formation + Delta-G solvation = -196.950982 kcal Electronic energy + Delta-G solvation = -25547.311219 eV Core-core repulsion = 21219.099917 eV Total energy + Delta-G solvation = -4328.211301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.111 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.70593 -47.68797 -40.90387 -39.30002 -38.68382 -36.80060 -34.96565 -32.91369 -31.06171 -30.64419 -29.46101 -27.52583 -26.65155 -24.89243 -23.37302 -22.67326 -21.12468 -20.45436 -19.55711 -18.59027 -18.26795 -18.06807 -16.78505 -16.44835 -16.33629 -16.11195 -15.86661 -15.13875 -14.96114 -14.76295 -14.51666 -14.36276 -14.21809 -14.10120 -13.99057 -13.73436 -13.19118 -13.18811 -13.01639 -12.44099 -12.31716 -12.20036 -11.85411 -11.46297 -11.30673 -11.20774 -11.06012 -10.64568 -10.37396 -9.91751 -9.54155 -9.24522 -9.10444 -8.62052 -8.42463 -8.25807 -6.11086 -4.13961 0.61717 1.04497 2.16348 2.84515 2.91517 3.09544 3.27540 3.35014 3.39494 3.54823 3.73893 3.91174 4.26577 4.40202 4.47854 4.57530 4.74093 4.88087 4.96144 4.96748 5.02416 5.26181 5.28980 5.31522 5.65470 5.88604 6.05239 6.14222 6.30455 6.30986 6.40150 6.69465 6.82906 7.07643 7.48906 7.58621 7.86725 7.92222 8.24864 8.53287 8.92086 9.51077 11.00566 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.002683 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.544892 B =10434.785907 C =11788.928854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.107 3.893 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.550 3.450 7 O -0.547 6.547 8 N -0.713 5.713 9 C 0.121 3.879 10 C 0.011 3.989 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.083 4.083 20 C -0.161 4.161 21 C 0.094 3.906 22 O -0.308 6.308 23 C 0.410 3.590 24 F -0.198 7.198 25 F -0.198 7.198 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.153 0.847 30 H 0.398 0.602 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 -25.753 -0.006 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.061 3.939 4 C -0.140 4.140 5 C -0.113 4.113 6 C 0.336 3.664 7 O -0.426 6.426 8 N -0.363 5.363 9 C -0.001 4.001 10 C -0.026 4.026 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.102 4.102 20 C -0.179 4.179 21 C 0.050 3.950 22 O -0.226 6.226 23 C 0.319 3.681 24 F -0.180 7.180 25 F -0.179 7.179 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.170 0.830 30 H 0.233 0.767 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.236 -25.969 -0.006 26.312 hybrid contribution 0.132 1.378 0.000 1.385 sum 4.368 -24.590 -0.006 24.975 Atomic orbital electron populations 1.23153 0.77872 1.04168 1.01982 1.86144 1.21601 1.25264 1.89058 1.17970 0.88498 0.85483 1.01958 1.21192 1.01083 0.89804 1.01910 1.19923 0.93467 0.93742 1.04197 1.18078 0.87456 0.83487 0.77357 1.90747 1.13599 1.87446 1.50824 1.46283 1.10855 1.06240 1.72926 1.21791 0.95039 0.82222 1.01043 1.19343 0.94745 0.90587 0.97944 1.21076 0.93262 0.90346 1.51310 0.92157 1.25000 0.94969 0.99368 0.94966 1.69962 1.07695 1.25197 1.50395 0.86453 0.80472 0.83003 0.77626 1.19576 1.20926 1.20922 1.21122 0.92475 0.98631 0.97939 1.21310 1.01113 0.90623 1.04870 1.18245 0.88154 0.85273 1.03344 1.86664 1.16926 1.30422 1.88546 1.23419 0.80170 0.92577 0.71901 1.93111 1.90569 1.82235 1.52035 1.93113 1.90580 1.82261 1.51993 0.87944 0.92234 0.92223 0.82964 0.76735 0.92271 0.92277 0.95847 0.95850 0.92871 0.84253 0.83635 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.54 10.28 -34.40 -0.35 -3.89 16 3 C 0.11 1.34 6.69 -39.19 -0.26 1.08 16 4 C -0.12 -1.60 8.58 -39.06 -0.33 -1.93 16 5 C -0.11 -1.58 5.87 -104.97 -0.62 -2.20 16 6 C 0.55 9.68 7.76 -12.44 -0.10 9.58 16 7 O -0.55 -11.28 16.34 5.29 0.09 -11.19 16 8 N -0.71 -12.60 5.51 -61.33 -0.34 -12.93 16 9 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 10 C 0.01 0.28 5.09 -27.88 -0.14 0.13 16 11 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 15 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.08 -1.02 9.53 -39.20 -0.37 -1.40 16 20 C -0.16 -1.87 8.23 -39.53 -0.33 -2.19 16 21 C 0.09 1.14 6.51 -38.93 -0.25 0.89 16 22 O -0.31 -3.19 10.20 -33.76 -0.34 -3.53 16 23 C 0.41 2.86 5.98 101.05 0.60 3.46 16 24 F -0.20 -1.71 15.57 2.25 0.04 -1.67 16 25 F -0.20 -1.71 15.57 2.25 0.04 -1.67 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 28 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 29 H 0.15 1.93 5.87 -52.49 -0.31 1.62 16 30 H 0.40 6.06 6.49 -40.82 -0.26 5.79 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.14 1.49 6.39 -52.48 -0.34 1.15 16 37 H 0.15 1.50 5.07 -52.49 -0.27 1.23 16 38 H 0.18 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -33.75 335.87 -5.39 -39.14 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.05 Total: 1.66 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.24 Total: -2.00 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.40 Total: -38.17 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.61 Total: -18.62 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.75 -5.39 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273034930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.808 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds