Wall clock time and date at job start Tue Mar 31 2020 11:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38139 * 119.99904 * 359.72690 * 3 2 1 5 5 C 1.39738 * 119.84827 * 179.74993 * 4 3 2 6 6 C 1.47601 * 120.06980 * 180.28142 * 5 4 3 7 7 O 1.21588 * 120.00328 * 0.26470 * 6 5 4 8 8 N 1.34783 * 119.99992 * 180.27169 * 6 5 4 9 9 C 1.46502 * 120.00125 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46854 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47005 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00060 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00210 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00038 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00177 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46891 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47106 * 119.99869 * 15 13 11 18 18 H 1.48492 * 109.47008 * 240.00105 * 15 13 11 19 19 C 1.39701 * 119.85375 * 0.54066 * 5 4 3 20 20 C 1.37783 * 120.00789 * 359.71588 * 19 5 4 21 21 C 1.38839 * 120.14823 * 0.02562 * 20 19 5 22 22 O 1.35797 * 119.92559 * 179.97438 * 21 20 19 23 23 C 1.42893 * 117.00362 * 0.02562 * 22 21 20 24 24 F 1.39898 * 109.47494 * 300.00208 * 23 22 21 25 25 F 1.39902 * 109.46922 * 60.00318 * 23 22 21 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 29 29 H 1.07995 * 120.07748 * 359.97438 * 4 3 2 30 30 H 0.96999 * 119.99549 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.46907 * 300.00089 * 9 8 6 32 32 H 1.09000 * 109.46997 * 59.99944 * 9 8 6 33 33 H 1.08996 * 109.47287 * 300.00132 * 10 9 8 34 34 H 1.09000 * 109.47017 * 60.00382 * 10 9 8 35 35 H 0.96996 * 119.99962 * 180.02562 * 14 13 11 36 36 H 1.08004 * 119.99561 * 179.68144 * 19 5 4 37 37 H 1.07996 * 119.92874 * 179.97438 * 20 19 5 38 38 H 1.09003 * 109.47152 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2942 2.3703 -0.0057 5 6 1.9319 3.6137 -0.0004 6 6 1.1329 4.8547 -0.0002 7 8 -0.0816 4.7958 0.0002 8 7 1.7494 6.0532 -0.0006 9 6 0.9563 7.2850 -0.0009 10 6 1.8931 8.4946 -0.0007 11 6 1.0773 9.7617 -0.0017 12 1 -0.0014 9.7094 -0.0020 13 6 1.7081 10.9878 -0.0023 14 7 3.0217 11.0515 -0.0014 15 14 0.6968 12.5584 -0.0028 16 1 -0.7483 12.2166 -0.0019 17 1 1.0175 13.3540 1.2094 18 1 1.0173 13.3530 -1.2156 19 6 3.3274 3.6795 -0.0008 20 6 4.0719 2.5202 -0.0005 21 6 3.4386 1.2847 -0.0003 22 8 4.1768 0.1449 -0.0005 23 6 5.5981 0.2925 -0.0003 24 9 5.9940 0.9970 -1.1423 25 9 5.9937 0.9963 1.1422 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 0.2157 2.3153 -0.0106 30 1 2.7183 6.1001 -0.0007 31 1 0.3276 7.3120 -0.8909 32 1 0.3276 7.3126 0.8891 33 1 2.5215 8.4674 0.8894 34 1 2.5221 8.4672 -0.8905 35 1 3.4654 11.9140 -0.0014 36 1 3.8226 4.6393 -0.0019 37 1 5.1506 2.5726 -0.0012 38 1 6.0656 -0.6922 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273034930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:06 Heat of formation + Delta-G solvation = -219.695790 kcal Electronic energy + Delta-G solvation = -25548.297508 eV Core-core repulsion = 21219.099917 eV Total energy + Delta-G solvation = -4329.197590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.111 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -50.31342 -48.30342 -41.87722 -40.60855 -39.48864 -37.81053 -36.67378 -34.87058 -32.32866 -31.67547 -30.96670 -28.36174 -27.46946 -26.56281 -24.55289 -23.61011 -22.87639 -21.76577 -20.36561 -19.49882 -19.03721 -18.89306 -18.46170 -17.61904 -17.46217 -16.94876 -16.79758 -16.51232 -16.47377 -16.45565 -15.49210 -15.25097 -15.02061 -14.96616 -14.91797 -14.84055 -14.62236 -14.33946 -14.14204 -13.87807 -13.27266 -13.14266 -13.09831 -12.94062 -12.61623 -12.51965 -12.32832 -12.28700 -12.13246 -11.70163 -11.46486 -11.04081 -10.61406 -10.19194 -10.00224 -9.23871 -8.24292 -6.34525 -0.43934 0.08734 1.41241 1.42387 1.49286 1.55290 1.64638 2.06534 2.17823 2.43399 2.54015 2.58750 3.10744 3.41910 3.56103 3.62167 3.69567 3.78391 3.91190 3.98837 4.31650 4.35673 4.39272 4.45134 4.47840 4.69286 4.75522 4.83657 4.90613 5.06498 5.16908 5.24694 5.46524 5.55317 5.57229 5.77915 6.15222 6.21707 6.50849 6.78660 7.11927 7.34835 8.87778 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.002683 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.544892 B =10434.785907 C =11788.928854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.316 6.316 3 C 0.100 3.900 4 C -0.121 4.121 5 C -0.129 4.129 6 C 0.553 3.447 7 O -0.582 6.582 8 N -0.709 5.709 9 C 0.140 3.860 10 C 0.021 3.979 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.077 4.077 20 C -0.162 4.162 21 C 0.097 3.903 22 O -0.315 6.315 23 C 0.404 3.596 24 F -0.207 7.207 25 F -0.207 7.207 26 H 0.130 0.870 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.153 0.847 30 H 0.410 0.590 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.266 0.734 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 -26.907 -0.008 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.230 6.230 3 C 0.054 3.946 4 C -0.141 4.141 5 C -0.133 4.133 6 C 0.342 3.658 7 O -0.464 6.464 8 N -0.360 5.360 9 C 0.017 3.983 10 C -0.016 4.016 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.790 3.210 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.096 4.096 20 C -0.180 4.180 21 C 0.052 3.948 22 O -0.233 6.233 23 C 0.315 3.685 24 F -0.189 7.189 25 F -0.189 7.189 26 H 0.148 0.852 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.171 0.829 30 H 0.247 0.753 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.171 0.829 37 H 0.178 0.822 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.774 -27.146 -0.008 27.562 hybrid contribution 0.034 1.596 0.001 1.596 sum 4.808 -25.550 -0.008 25.998 Atomic orbital electron populations 1.23423 0.76193 1.06088 1.02184 1.86137 1.23345 1.24628 1.88883 1.18038 0.88964 0.85614 1.01968 1.21208 1.01299 0.89792 1.01785 1.19642 0.93979 0.92405 1.07237 1.18489 0.87241 0.84089 0.76006 1.90720 1.15232 1.87964 1.52448 1.46067 1.11301 1.05405 1.73196 1.21311 0.94267 0.82530 1.00241 1.19154 0.94606 0.91328 0.96534 1.21485 0.93637 0.91828 1.51450 0.92236 1.25865 0.96095 1.02775 0.94433 1.70061 1.09199 1.26254 1.51043 0.85397 0.79032 0.78749 0.77870 1.18954 1.20261 1.20247 1.21262 0.91663 0.99708 0.96955 1.21460 1.01730 0.90205 1.04602 1.18445 0.88461 0.86060 1.01799 1.86679 1.18734 1.29716 1.88137 1.24380 0.78666 0.94504 0.70965 1.93092 1.90453 1.82756 1.52624 1.93093 1.90465 1.82781 1.52584 0.85205 0.92037 0.92035 0.82937 0.75289 0.93093 0.93103 0.97138 0.97142 0.92538 0.82860 0.82243 0.74592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.32 -6.89 10.28 -79.55 -0.82 -7.71 16 3 C 0.10 2.43 6.69 22.52 0.15 2.58 16 4 C -0.12 -3.19 8.58 22.61 0.19 -2.99 16 5 C -0.13 -3.70 5.87 -20.09 -0.12 -3.81 16 6 C 0.55 19.65 7.76 86.71 0.67 20.33 16 7 O -0.58 -24.46 16.34 -3.99 -0.07 -24.52 16 8 N -0.71 -25.25 5.51 -466.19 -2.57 -27.82 16 9 C 0.14 6.02 5.61 86.38 0.48 6.51 16 10 C 0.02 1.06 5.09 29.85 0.15 1.22 16 11 C -0.55 -30.36 9.11 25.60 0.23 -30.13 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 13 C 0.01 0.40 5.46 84.65 0.46 0.86 16 14 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 15 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 19 C -0.08 -1.83 9.53 22.52 0.21 -1.62 16 20 C -0.16 -3.53 8.23 22.31 0.18 -3.34 16 21 C 0.10 2.22 6.51 22.69 0.15 2.36 16 22 O -0.32 -5.84 10.20 -77.26 -0.79 -6.63 16 23 C 0.40 4.52 5.98 113.37 0.68 5.20 16 24 F -0.21 -3.11 15.57 44.97 0.70 -2.41 16 25 F -0.21 -3.11 15.57 44.97 0.70 -2.41 16 26 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 0.88 7.65 -2.39 -0.02 0.86 16 28 H 0.06 0.88 7.67 -2.38 -0.02 0.87 16 29 H 0.15 3.90 5.87 -2.91 -0.02 3.88 16 30 H 0.41 12.46 6.49 -92.71 -0.60 11.86 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.15 3.10 6.39 -2.91 -0.02 3.08 16 37 H 0.16 2.99 5.07 -2.91 -0.01 2.98 16 38 H 0.24 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -72.49 335.87 4.56 -67.93 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.52 Total: 13.29 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 4.57 Total: -1.50 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -2.28 Total: -81.58 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.67 Total: -38.85 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 1.40 Total: -4.83 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.49 4.56 -67.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273034930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.766 kcal (2) G-P(sol) polarization free energy of solvation -72.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds