Wall clock time and date at job start Tue Mar 31 2020 11:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48508 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47385 * 299.99714 * 3 2 1 6 6 H 1.48500 * 109.47327 * 60.00178 * 3 2 1 7 7 C 1.37873 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47480 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47620 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00266 * 180.02562 * 11 10 9 13 13 O 1.21550 * 119.99630 * 359.97438 * 12 11 10 14 14 C 1.47847 * 119.99785 * 180.02562 * 12 11 10 15 15 C 1.39603 * 120.14481 * 5.72491 * 14 12 11 16 16 C 1.37931 * 119.84589 * 180.29811 * 15 14 12 17 17 C 1.38380 * 120.15340 * 359.68392 * 16 15 14 18 18 C 1.38346 * 120.28583 * 0.02562 * 17 16 15 19 19 C 1.37973 * 120.14805 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.07313 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47036 * 98.55915 * 20 19 18 22 22 C 1.53001 * 109.47232 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.47142 * 59.99629 * 22 21 20 24 24 F 1.39895 * 109.47470 * 179.97438 * 22 21 20 25 25 F 1.39900 * 109.46711 * 299.99872 * 22 21 20 26 26 H 0.97002 * 119.99897 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47347 * 59.99390 * 9 7 2 28 28 H 1.08998 * 109.47291 * 299.99693 * 9 7 2 29 29 H 1.09005 * 109.46925 * 60.00108 * 10 9 7 30 30 H 1.09001 * 109.47379 * 300.00084 * 10 9 7 31 31 H 0.97003 * 119.99591 * 0.02562 * 11 10 9 32 32 H 1.07990 * 120.07451 * 0.02562 * 15 14 12 33 33 H 1.08009 * 119.92564 * 179.70521 * 16 15 14 34 34 H 1.07995 * 119.85729 * 180.02562 * 17 16 15 35 35 H 1.08002 * 119.92374 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47467 * 338.55548 * 20 19 18 37 37 H 1.09002 * 109.47002 * 218.55846 * 20 19 18 38 38 H 1.09003 * 109.46643 * 299.99817 * 21 20 19 39 39 H 1.08997 * 109.47291 * 59.99526 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4023 -6.0979 0.0014 14 6 1.4475 -7.3784 0.0018 15 6 0.0568 -7.3849 -0.1192 16 6 -0.6272 -8.5827 -0.1122 17 6 0.0625 -9.7763 0.0078 18 6 1.4412 -9.7771 0.1220 19 6 2.1376 -8.5860 0.1164 20 6 3.6395 -8.5888 0.2404 21 6 4.2661 -8.4504 -1.1485 22 6 5.7909 -8.4539 -1.0228 23 9 6.2081 -9.6556 -0.4405 24 9 6.3639 -8.3279 -2.2928 25 9 6.1950 -7.3817 -0.2200 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.5429 -4.9308 0.0011 32 1 -0.4826 -6.4542 -0.2136 33 1 -1.7037 -8.5890 -0.2010 34 1 -0.4779 -10.7114 0.0123 35 1 1.9735 -10.7121 0.2158 36 1 3.9649 -9.5248 0.6942 37 1 3.9540 -7.7532 0.8658 38 1 3.9515 -9.2860 -1.7738 39 1 3.9407 -7.5144 -1.6024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273060847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:18 Heat of formation + Delta-G solvation = -202.365578 kcal Electronic energy + Delta-G solvation = -25963.972844 eV Core-core repulsion = 21647.899537 eV Total energy + Delta-G solvation = -4316.073306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.04995 -48.57539 -48.50612 -41.43610 -39.29219 -36.81805 -35.53075 -34.69719 -32.63828 -31.46211 -31.00315 -27.33061 -26.59105 -24.64222 -23.65137 -23.06073 -21.98650 -21.42341 -19.49543 -19.39947 -18.77919 -18.42852 -18.30680 -17.00676 -16.61032 -16.47431 -16.39160 -16.19366 -15.68261 -15.48213 -15.41645 -14.98740 -14.95922 -14.73475 -14.71211 -14.62120 -14.32147 -14.18620 -14.06527 -13.89457 -13.20858 -12.99057 -12.94426 -12.86792 -12.55489 -12.51499 -12.34574 -12.10265 -11.89317 -11.63713 -11.42490 -10.62367 -10.59476 -10.10772 -9.84705 -9.69000 -8.25333 -6.35489 -0.10080 0.38910 1.40055 1.41385 1.54255 1.86240 1.92721 2.23775 2.44683 2.80372 2.92451 3.09674 3.15640 3.17194 3.72725 3.84949 3.86631 4.10234 4.16772 4.23940 4.44854 4.45752 4.48986 4.51998 4.57654 4.84051 4.85143 4.87752 5.02226 5.12388 5.31340 5.38989 5.50367 5.53049 5.56876 5.57802 5.78080 5.97864 6.15261 6.61590 6.77867 7.25448 7.34029 8.86735 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003440 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.722405 B = 8138.572713 C =10134.670857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.143 3.857 11 N -0.715 5.715 12 C 0.540 3.460 13 O -0.562 6.562 14 C -0.150 4.150 15 C -0.092 4.092 16 C -0.127 4.127 17 C -0.085 4.085 18 C -0.122 4.122 19 C -0.038 4.038 20 C -0.085 4.085 21 C -0.142 4.142 22 C 0.453 3.547 23 F -0.185 7.185 24 F -0.193 7.193 25 F -0.192 7.192 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.008 0.992 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.406 0.594 32 H 0.133 0.867 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 -24.771 -1.314 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.020 3.980 11 N -0.366 5.366 12 C 0.329 3.671 13 O -0.443 6.443 14 C -0.153 4.153 15 C -0.111 4.111 16 C -0.145 4.145 17 C -0.103 4.103 18 C -0.140 4.140 19 C -0.039 4.039 20 C -0.122 4.122 21 C -0.180 4.180 22 C 0.399 3.601 23 F -0.167 7.167 24 F -0.175 7.175 25 F -0.173 7.173 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.243 0.757 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.146 0.854 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.161 -24.615 -1.312 24.677 hybrid contribution 0.194 1.525 0.028 1.538 sum 1.355 -23.089 -1.284 23.165 Atomic orbital electron populations 1.70059 1.07488 1.27930 1.51074 1.25843 0.95780 1.03008 0.94402 0.85417 0.78953 0.78876 0.77932 1.19083 1.20164 1.20198 1.21485 0.93548 0.91944 1.51435 0.92409 1.19136 0.94251 0.91816 0.96316 1.21208 0.94940 0.81981 0.99881 1.46107 1.10981 1.05637 1.73869 1.18876 0.87369 0.84544 0.76282 1.90714 1.14373 1.87787 1.51414 1.19815 0.94649 0.92210 1.08595 1.21552 0.92217 1.00251 0.97058 1.21480 1.01656 0.91576 0.99796 1.21775 0.93998 0.99409 0.95122 1.21374 0.94952 0.97279 1.00387 1.19801 0.94933 0.92275 0.96876 1.20664 0.91341 1.04477 0.95736 1.22711 0.86224 1.07509 1.01544 1.20802 0.93333 0.72994 0.72980 1.93152 1.92361 1.46426 1.84714 1.93154 1.87515 1.95748 1.41082 1.93200 1.92568 1.57195 1.74381 0.92528 0.97290 0.97381 0.93528 0.93382 0.75714 0.84946 0.82808 0.82121 0.82590 0.88503 0.89886 0.85366 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C 0.14 6.16 5.61 86.38 0.48 6.64 16 11 N -0.72 -24.82 5.51 -465.96 -2.57 -27.39 16 12 C 0.54 17.84 7.64 86.79 0.66 18.50 16 13 O -0.56 -21.24 11.59 -3.87 -0.04 -21.29 16 14 C -0.15 -3.75 5.87 -20.09 -0.12 -3.87 16 15 C -0.09 -1.84 9.53 22.53 0.21 -1.63 16 16 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 17 C -0.09 -0.99 10.04 22.33 0.22 -0.77 16 18 C -0.12 -1.72 9.66 22.23 0.21 -1.51 16 19 C -0.04 -0.79 5.17 -19.61 -0.10 -0.90 16 20 C -0.09 -1.89 4.36 29.85 0.13 -1.76 16 21 C -0.14 -3.13 4.77 30.59 0.15 -2.98 16 22 C 0.45 11.32 3.16 71.98 0.23 11.55 16 23 F -0.18 -4.20 16.80 44.97 0.76 -3.44 16 24 F -0.19 -5.02 17.32 44.97 0.78 -4.25 16 25 F -0.19 -6.00 16.80 44.97 0.76 -5.25 16 26 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.41 12.25 6.54 -92.71 -0.61 11.64 16 32 H 0.13 2.47 6.45 -2.92 -0.02 2.45 16 33 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.16 1.32 8.05 -2.91 -0.02 1.30 16 36 H 0.10 1.65 7.68 -2.39 -0.02 1.63 16 37 H 0.08 2.43 5.62 -2.39 -0.01 2.42 16 38 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.10 2.60 6.57 -2.39 -0.02 2.58 16 Total: -1.00 -67.65 341.43 5.63 -62.01 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.49 Total: 14.05 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 3.16 Total: -6.42 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.28 Total: -81.19 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.29 kcal Atomic # 9 Polarization: -15.22 SS G_CDS: 2.29 Total: -12.93 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.65 5.63 -62.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273060847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.352 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds