Wall clock time and date at job start Tue Mar 31 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99597 * 2 1 4 4 H 1.48504 * 109.46842 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47328 * 300.00203 * 3 2 1 6 6 H 1.48499 * 109.47038 * 60.00724 * 3 2 1 7 7 C 1.37873 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47209 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.47125 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99875 * 180.02562 * 11 10 9 13 13 H 1.09002 * 110.26896 * 324.37297 * 12 11 10 14 14 C 1.54344 * 110.38295 * 202.25255 * 12 11 10 15 15 C 1.54346 * 102.39322 * 214.65919 * 14 12 11 16 16 C 1.51392 * 105.17626 * 26.36713 * 15 14 12 17 17 C 1.38549 * 130.32373 * 162.79999 * 16 15 14 18 18 C 1.38007 * 120.28781 * 180.28378 * 17 16 15 19 19 C 1.38749 * 119.87691 * 359.51185 * 18 17 16 20 20 O 1.35899 * 120.08882 * 180.24420 * 19 18 17 21 21 C 1.42901 * 117.00108 * 0.20878 * 20 19 18 22 22 F 1.39900 * 109.47084 * 60.00209 * 21 20 19 23 23 F 1.39898 * 109.47368 * 180.02562 * 21 20 19 24 24 F 1.39905 * 109.47219 * 299.99946 * 21 20 19 25 25 C 1.38596 * 119.81766 * 0.45220 * 19 18 17 26 26 C 1.38262 * 109.74009 * 342.80267 * 16 15 14 27 27 H 0.96996 * 120.00165 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47584 * 59.99288 * 9 7 2 29 29 H 1.09007 * 109.46391 * 299.99700 * 9 7 2 30 30 H 1.08999 * 109.46953 * 59.99754 * 10 9 7 31 31 H 1.09001 * 109.47402 * 299.99636 * 10 9 7 32 32 H 1.00892 * 110.99764 * 56.04330 * 11 10 9 33 33 H 1.08995 * 110.81994 * 332.88205 * 14 12 11 34 34 H 1.08993 * 110.82597 * 96.23812 * 14 12 11 35 35 H 1.09002 * 110.30214 * 267.44171 * 15 14 12 36 36 H 1.09002 * 110.30399 * 145.29778 * 15 14 12 37 37 H 1.08002 * 119.85248 * 359.97438 * 17 16 15 38 38 H 1.07998 * 120.05347 * 179.70556 * 18 17 16 39 39 H 1.08000 * 119.91068 * 179.81504 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 7 1.5110 -4.9343 -0.0033 12 6 2.4355 -6.0758 -0.0037 13 1 3.3190 -5.8459 -0.5991 14 6 1.7332 -7.3361 -0.5520 15 6 2.3724 -8.4630 0.2870 16 6 2.7982 -7.8013 1.5804 17 6 3.1275 -8.3575 2.8059 18 6 3.4865 -7.5474 3.8639 19 6 3.5277 -6.1705 3.6973 20 8 3.8854 -5.3691 4.7349 21 6 4.2111 -6.0119 5.9689 22 9 5.2924 -6.8776 5.7725 23 9 4.5533 -5.0463 6.9216 24 9 3.1060 -6.7411 6.4208 25 6 3.1988 -5.6146 2.4710 26 6 2.8343 -6.4293 1.4132 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8918 29 1 0.6242 -2.5574 0.8881 30 1 2.8721 -3.6050 0.8873 31 1 2.8721 -3.6035 -0.8927 32 1 0.8743 -4.9838 -0.7844 33 1 0.6582 -7.2866 -0.3794 34 1 1.9480 -7.4690 -1.6123 35 1 3.2389 -8.8747 -0.2304 36 1 1.6419 -9.2472 0.4859 37 1 3.0983 -9.4293 2.9351 38 1 3.7379 -7.9846 4.8189 39 1 3.2275 -4.5429 2.3405 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273309230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:08 Heat of formation + Delta-G solvation = -175.327338 kcal Electronic energy + Delta-G solvation = -26119.623525 eV Core-core repulsion = 21804.722685 eV Total energy + Delta-G solvation = -4314.900840 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.57619 -48.28953 -48.17323 -40.66778 -39.00173 -36.09836 -34.31147 -32.69347 -31.10271 -29.38817 -28.56804 -26.45201 -25.42419 -23.63182 -23.07335 -21.66111 -21.04341 -20.19053 -19.28968 -19.26743 -18.88091 -16.60266 -16.39708 -16.16339 -15.70271 -15.34301 -15.26952 -14.93337 -14.63116 -14.61116 -14.53583 -14.35945 -14.32333 -14.25065 -14.15607 -13.60709 -13.39443 -13.05914 -12.58862 -12.32938 -12.26819 -11.90647 -11.63795 -11.42466 -11.23889 -11.00813 -10.87627 -10.67621 -10.48392 -10.02854 -9.37455 -9.14574 -8.90394 -8.39047 -8.35258 -7.92292 -6.00386 -4.03058 1.13887 1.27004 1.39982 2.69641 3.31381 3.38959 3.42796 3.50599 3.65806 3.88469 4.33655 4.42693 4.47777 4.60292 4.67444 4.82177 5.05833 5.13160 5.20998 5.31858 5.35953 5.56153 5.63768 5.67510 5.75693 6.00459 6.03821 6.09096 6.13017 6.28594 6.32904 6.40884 6.62196 6.89916 6.97328 7.40902 7.69600 7.78491 7.90647 8.06093 8.41798 9.04305 9.61130 11.11024 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.003918 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.200304 B = 7144.832498 C = 9356.982125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.061 3.939 11 N -0.681 5.681 12 C 0.120 3.880 13 H 0.061 0.939 14 C -0.122 4.122 15 C -0.074 4.074 16 C -0.116 4.116 17 C -0.073 4.073 18 C -0.193 4.193 19 C 0.099 3.901 20 O -0.306 6.306 21 C 0.604 3.396 22 F -0.168 7.168 23 F -0.133 7.133 24 F -0.167 7.167 25 C -0.095 4.095 26 C -0.033 4.033 27 H 0.260 0.740 28 H 0.014 0.986 29 H 0.026 0.974 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.342 0.658 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 -20.041 6.631 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.067 4.067 11 N -0.313 5.313 12 C 0.010 3.990 13 H 0.079 0.921 14 C -0.160 4.160 15 C -0.111 4.111 16 C -0.117 4.117 17 C -0.091 4.091 18 C -0.212 4.212 19 C 0.057 3.943 20 O -0.226 6.226 21 C 0.513 3.487 22 F -0.150 7.150 23 F -0.114 7.114 24 F -0.149 7.149 25 C -0.113 4.113 26 C -0.034 4.034 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.268 -19.734 7.337 22.273 hybrid contribution 0.867 0.951 -0.380 1.342 sum 8.136 -18.783 6.957 21.619 Atomic orbital electron populations 1.69981 1.06029 1.26501 1.50681 1.24991 0.94819 0.99204 0.95251 0.86549 0.80111 0.83828 0.77597 1.19752 1.21035 1.20945 1.21199 0.93004 0.90975 1.50860 0.92715 1.19071 0.93989 0.90373 0.97795 1.22334 0.97126 0.88467 0.98761 1.60661 1.19163 1.01576 1.49890 1.21054 0.95257 0.92017 0.90696 0.92121 1.22517 1.01181 0.93041 0.99227 1.20948 1.00393 0.97835 0.91956 1.20605 1.01297 0.94603 0.95197 1.20272 0.98274 0.99503 0.91024 1.21294 1.07203 0.91654 1.01016 1.18489 1.00531 0.88908 0.86341 1.86460 1.82795 1.35485 1.17838 1.19358 0.75012 0.74548 0.79803 1.93285 1.56528 1.70439 1.94766 1.93305 1.91966 1.64105 1.62038 1.93294 1.54148 1.77808 1.89610 1.20038 1.00864 1.01742 0.88664 1.20315 0.95174 0.92822 0.95053 0.93035 0.96754 0.95589 0.92132 0.96401 0.83898 0.89653 0.90421 0.90223 0.90528 0.85473 0.85135 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.06 1.24 5.40 -3.82 -0.02 1.22 16 11 N -0.68 -11.54 6.28 -106.85 -0.67 -12.21 16 12 C 0.12 1.66 3.18 -67.83 -0.22 1.44 16 13 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 14 C -0.12 -1.27 6.49 -25.32 -0.16 -1.43 16 15 C -0.07 -0.69 6.77 -26.84 -0.18 -0.87 16 16 C -0.12 -1.41 6.14 -104.16 -0.64 -2.05 16 17 C -0.07 -0.81 10.03 -39.55 -0.40 -1.21 16 18 C -0.19 -2.39 8.26 -39.48 -0.33 -2.71 16 19 C 0.10 1.44 6.48 -39.26 -0.25 1.19 16 20 O -0.31 -4.42 10.37 -19.42 -0.20 -4.62 16 21 C 0.60 7.19 3.42 101.05 0.35 7.53 16 22 F -0.17 -1.86 15.58 2.25 0.04 -1.82 16 23 F -0.13 -1.55 17.53 2.25 0.04 -1.51 16 24 F -0.17 -1.92 15.55 2.25 0.04 -1.89 16 25 C -0.09 -1.49 9.62 -39.39 -0.38 -1.87 16 26 C -0.03 -0.47 5.77 -104.22 -0.60 -1.07 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.06 1.24 5.64 -51.93 -0.29 0.95 16 31 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.34 5.43 8.44 -39.30 -0.33 5.10 16 33 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.41 5.11 -52.49 -0.27 1.14 16 39 H 0.14 2.48 5.86 -52.49 -0.31 2.17 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -30.39 334.71 -7.92 -38.31 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.53 Total: 0.91 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -3.39 Total: -12.78 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.07 Total: -38.35 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.20 Total: -4.62 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.11 Total: -5.21 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.39 -7.92 -38.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273309230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.015 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds