Wall clock time and date at job start Tue Mar 31 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86788 * 120.00428 * 2 1 4 4 H 1.48506 * 109.47292 * 239.99947 * 3 2 1 5 5 H 1.48498 * 109.47474 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47499 * 119.99900 * 3 2 1 7 7 C 1.37879 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47272 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47379 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99849 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.27089 * 35.61979 * 12 11 10 14 14 C 1.54337 * 110.30220 * 157.79783 * 12 11 10 15 15 C 1.54350 * 102.39781 * 92.55748 * 14 12 11 16 16 C 1.51390 * 105.17209 * 26.37263 * 15 14 12 17 17 C 1.38539 * 130.32111 * 162.80071 * 16 15 14 18 18 C 1.38005 * 120.29218 * 179.97438 * 17 16 15 19 19 C 1.38749 * 119.87584 * 0.02562 * 18 17 16 20 20 O 1.35902 * 120.09012 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99862 * 359.97438 * 20 19 18 22 22 F 1.39904 * 109.47184 * 60.00693 * 21 20 19 23 23 F 1.39906 * 109.47225 * 180.02562 * 21 20 19 24 24 F 1.39895 * 109.47616 * 300.00463 * 21 20 19 25 25 C 1.38596 * 119.81713 * 359.97438 * 19 18 17 26 26 C 1.38263 * 109.74080 * 342.78952 * 16 15 14 27 27 H 0.97002 * 119.99727 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47599 * 59.99632 * 9 7 2 29 29 H 1.09005 * 109.47158 * 299.99417 * 9 7 2 30 30 H 1.09004 * 109.47398 * 59.99421 * 10 9 7 31 31 H 1.09006 * 109.47155 * 300.00019 * 10 9 7 32 32 H 1.00895 * 110.99761 * 303.95205 * 11 10 9 33 33 H 1.09001 * 110.82588 * 210.78379 * 14 12 11 34 34 H 1.09000 * 110.82230 * 334.13665 * 14 12 11 35 35 H 1.09000 * 110.29641 * 145.29559 * 15 14 12 36 36 H 1.09000 * 110.29962 * 267.34437 * 15 14 12 37 37 H 1.08006 * 119.85131 * 0.26282 * 17 16 15 38 38 H 1.08000 * 120.05809 * 180.02562 * 18 17 16 39 39 H 1.07998 * 119.91249 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2449 -3.6622 0.0005 11 7 1.5103 -4.9344 0.0012 12 6 2.4348 -6.0760 0.0018 13 1 3.3183 -5.8461 0.5972 14 6 1.7302 -7.3353 0.5494 15 6 1.1932 -7.9999 -0.7360 16 6 2.1202 -7.5355 -1.8392 17 6 2.3221 -8.0417 -3.1129 18 6 3.2328 -7.4468 -3.9621 19 6 3.9500 -6.3371 -3.5388 20 8 4.8483 -5.7482 -4.3713 21 6 5.0045 -6.3246 -5.6695 22 9 3.7814 -6.2848 -6.3477 23 9 5.9609 -5.6004 -6.3894 24 9 5.4243 -7.6530 -5.5426 25 6 3.7478 -5.8310 -2.2645 26 6 2.8336 -6.4297 -1.4151 27 1 -0.4850 0.8401 -0.0004 28 1 0.6244 -2.5571 -0.8896 29 1 0.6238 -2.5567 0.8904 30 1 2.8717 -3.6045 0.8905 31 1 2.8716 -3.6045 -0.8895 32 1 0.8742 -4.9841 0.7827 33 1 2.4415 -7.9883 1.0551 34 1 0.9139 -7.0626 1.2182 35 1 1.2291 -9.0854 -0.6437 36 1 0.1730 -7.6713 -0.9338 37 1 1.7609 -8.9030 -3.4443 38 1 3.3868 -7.8443 -4.9544 39 1 4.3056 -4.9675 -1.9332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273309232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:12 Heat of formation + Delta-G solvation = -175.678818 kcal Electronic energy + Delta-G solvation = -26090.145459 eV Core-core repulsion = 21775.229377 eV Total energy + Delta-G solvation = -4314.916082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.60092 -48.32118 -48.19239 -40.67264 -39.03344 -36.11708 -34.18193 -32.60577 -31.20802 -29.32305 -28.53650 -26.54242 -25.43301 -23.70494 -23.10034 -21.64501 -20.94173 -20.27432 -19.31214 -19.26012 -18.91006 -16.54914 -16.26860 -16.15258 -15.72096 -15.36318 -15.14941 -14.98912 -14.86167 -14.63875 -14.54452 -14.47136 -14.35863 -14.27759 -14.14789 -13.45557 -13.35827 -13.09921 -12.74810 -12.24034 -12.14763 -11.95188 -11.60379 -11.27575 -11.12850 -11.01618 -10.90876 -10.75710 -10.52064 -10.01139 -9.39246 -9.19162 -8.94441 -8.37111 -8.34014 -7.90471 -5.99670 -4.02294 1.15222 1.24985 1.36548 2.67345 3.33966 3.38363 3.40743 3.50054 3.62854 3.86096 4.31777 4.44826 4.47922 4.59603 4.76393 4.82805 5.06709 5.11152 5.19266 5.35543 5.36513 5.57587 5.70625 5.74064 5.77545 6.00489 6.02564 6.05233 6.16352 6.29183 6.35105 6.37834 6.61869 6.89004 6.95757 7.40908 7.69782 7.78992 7.91525 8.06864 8.42640 9.04494 9.61533 11.11734 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.003772 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.481510 B = 7422.270587 C = 9447.762465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.064 3.936 11 N -0.678 5.678 12 C 0.121 3.879 13 H 0.054 0.946 14 C -0.121 4.121 15 C -0.072 4.072 16 C -0.101 4.101 17 C -0.073 4.073 18 C -0.190 4.190 19 C 0.098 3.902 20 O -0.308 6.308 21 C 0.604 3.396 22 F -0.165 7.165 23 F -0.134 7.134 24 F -0.168 7.168 25 C -0.099 4.099 26 C -0.034 4.034 27 H 0.261 0.739 28 H 0.025 0.975 29 H 0.014 0.986 30 H 0.017 0.983 31 H 0.059 0.941 32 H 0.342 0.658 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 -20.109 -6.729 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.064 4.064 11 N -0.311 5.311 12 C 0.011 3.989 13 H 0.071 0.929 14 C -0.159 4.159 15 C -0.109 4.109 16 C -0.102 4.102 17 C -0.091 4.091 18 C -0.209 4.209 19 C 0.056 3.944 20 O -0.228 6.228 21 C 0.513 3.487 22 F -0.147 7.147 23 F -0.115 7.115 24 F -0.150 7.150 25 C -0.118 4.118 26 C -0.035 4.035 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.981 -19.840 -7.393 22.294 hybrid contribution 0.879 1.007 0.338 1.378 sum 7.860 -18.833 -7.055 21.592 Atomic orbital electron populations 1.69960 1.06033 1.26708 1.50535 1.24985 0.94830 0.99182 0.95251 0.86658 0.79589 0.83134 0.78617 1.20206 1.21255 1.20279 1.21121 0.92923 0.90995 1.51064 0.92839 1.19051 0.93979 0.90353 0.97707 1.22258 0.97105 0.88292 0.98708 1.60525 1.19171 1.01384 1.49976 1.20946 0.95232 0.92157 0.90603 0.92863 1.22483 1.00331 0.95943 0.97096 1.20951 0.98549 0.99861 0.91522 1.20630 0.97871 0.96799 0.94916 1.20305 0.97054 0.99558 0.92218 1.21289 1.00718 0.97466 1.01400 1.18412 0.91509 0.94402 0.90053 1.86425 1.59688 1.54655 1.22047 1.19348 0.74992 0.74615 0.79734 1.93306 1.44558 1.95902 1.80939 1.93303 1.63718 1.78290 1.76178 1.93283 1.90268 1.35938 1.95531 1.19835 1.00624 1.01239 0.90109 1.20287 0.93270 0.93852 0.96132 0.92933 0.95676 0.96786 0.96445 0.92276 0.83851 0.90641 0.89874 0.90976 0.89519 0.85409 0.85114 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.06 1.32 5.45 -3.82 -0.02 1.30 16 11 N -0.68 -11.49 6.33 -106.84 -0.68 -12.17 16 12 C 0.12 1.67 3.19 -67.83 -0.22 1.45 16 13 H 0.05 0.74 7.86 -51.93 -0.41 0.33 16 14 C -0.12 -1.25 6.74 -25.32 -0.17 -1.42 16 15 C -0.07 -0.74 6.77 -26.84 -0.18 -0.92 16 16 C -0.10 -1.28 6.14 -104.16 -0.64 -1.92 16 17 C -0.07 -0.85 10.03 -39.56 -0.40 -1.25 16 18 C -0.19 -2.37 8.26 -39.48 -0.33 -2.69 16 19 C 0.10 1.39 6.48 -39.26 -0.25 1.13 16 20 O -0.31 -4.25 10.37 -19.43 -0.20 -4.45 16 21 C 0.60 6.99 3.42 101.05 0.35 7.33 16 22 F -0.17 -1.93 15.56 2.25 0.04 -1.89 16 23 F -0.13 -1.49 17.53 2.25 0.04 -1.45 16 24 F -0.17 -1.79 15.57 2.25 0.04 -1.76 16 25 C -0.10 -1.49 9.51 -39.39 -0.37 -1.86 16 26 C -0.03 -0.49 5.65 -104.21 -0.59 -1.08 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.06 1.25 7.09 -51.93 -0.37 0.88 16 32 H 0.34 5.40 8.09 -39.29 -0.32 5.08 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.79 7.58 -51.93 -0.39 0.40 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.13 1.43 5.11 -52.49 -0.27 1.16 16 39 H 0.14 2.05 7.56 -52.49 -0.40 1.65 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -30.57 337.13 -8.00 -38.57 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.65 Total: 0.44 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.38 Total: -12.91 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.06 Total: -38.39 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.20 Total: -4.45 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.57 -8.00 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273309232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.104 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds