Wall clock time and date at job start Tue Mar 31 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86788 * 120.00428 * 2 1 4 4 H 1.48506 * 109.47292 * 239.99947 * 3 2 1 5 5 H 1.48498 * 109.47474 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47499 * 119.99900 * 3 2 1 7 7 C 1.37879 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47272 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47379 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99849 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.27089 * 35.61979 * 12 11 10 14 14 C 1.54337 * 110.30220 * 157.79783 * 12 11 10 15 15 C 1.54350 * 102.39781 * 92.55748 * 14 12 11 16 16 C 1.51390 * 105.17209 * 26.37263 * 15 14 12 17 17 C 1.38539 * 130.32111 * 162.80071 * 16 15 14 18 18 C 1.38005 * 120.29218 * 179.97438 * 17 16 15 19 19 C 1.38749 * 119.87584 * 0.02562 * 18 17 16 20 20 O 1.35902 * 120.09012 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99862 * 359.97438 * 20 19 18 22 22 F 1.39904 * 109.47184 * 60.00693 * 21 20 19 23 23 F 1.39906 * 109.47225 * 180.02562 * 21 20 19 24 24 F 1.39895 * 109.47616 * 300.00463 * 21 20 19 25 25 C 1.38596 * 119.81713 * 359.97438 * 19 18 17 26 26 C 1.38263 * 109.74080 * 342.78952 * 16 15 14 27 27 H 0.97002 * 119.99727 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47599 * 59.99632 * 9 7 2 29 29 H 1.09005 * 109.47158 * 299.99417 * 9 7 2 30 30 H 1.09004 * 109.47398 * 59.99421 * 10 9 7 31 31 H 1.09006 * 109.47155 * 300.00019 * 10 9 7 32 32 H 1.00895 * 110.99761 * 303.95205 * 11 10 9 33 33 H 1.09001 * 110.82588 * 210.78379 * 14 12 11 34 34 H 1.09000 * 110.82230 * 334.13665 * 14 12 11 35 35 H 1.09000 * 110.29641 * 145.29559 * 15 14 12 36 36 H 1.09000 * 110.29962 * 267.34437 * 15 14 12 37 37 H 1.08006 * 119.85131 * 0.26282 * 17 16 15 38 38 H 1.08000 * 120.05809 * 180.02562 * 18 17 16 39 39 H 1.07998 * 119.91249 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2449 -3.6622 0.0005 11 7 1.5103 -4.9344 0.0012 12 6 2.4348 -6.0760 0.0018 13 1 3.3183 -5.8461 0.5972 14 6 1.7302 -7.3353 0.5494 15 6 1.1932 -7.9999 -0.7360 16 6 2.1202 -7.5355 -1.8392 17 6 2.3221 -8.0417 -3.1129 18 6 3.2328 -7.4468 -3.9621 19 6 3.9500 -6.3371 -3.5388 20 8 4.8483 -5.7482 -4.3713 21 6 5.0045 -6.3246 -5.6695 22 9 3.7814 -6.2848 -6.3477 23 9 5.9609 -5.6004 -6.3894 24 9 5.4243 -7.6530 -5.5426 25 6 3.7478 -5.8310 -2.2645 26 6 2.8336 -6.4297 -1.4151 27 1 -0.4850 0.8401 -0.0004 28 1 0.6244 -2.5571 -0.8896 29 1 0.6238 -2.5567 0.8904 30 1 2.8717 -3.6045 0.8905 31 1 2.8716 -3.6045 -0.8895 32 1 0.8742 -4.9841 0.7827 33 1 2.4415 -7.9883 1.0551 34 1 0.9139 -7.0626 1.2182 35 1 1.2291 -9.0854 -0.6437 36 1 0.1730 -7.6713 -0.9338 37 1 1.7609 -8.9030 -3.4443 38 1 3.3868 -7.8443 -4.9544 39 1 4.3056 -4.9675 -1.9332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273309232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:11 Heat of formation + Delta-G solvation = -193.926049 kcal Electronic energy + Delta-G solvation = -26090.936718 eV Core-core repulsion = 21775.229377 eV Total energy + Delta-G solvation = -4315.707341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.52258 -49.23780 -49.10779 -41.67367 -40.06054 -37.39122 -35.70612 -34.37702 -32.34951 -30.93535 -29.59028 -27.75159 -26.60757 -25.43541 -24.05650 -22.78834 -22.37326 -21.54292 -20.24216 -20.21251 -19.91265 -18.52027 -17.43109 -17.15147 -16.85717 -16.56299 -16.33883 -16.16690 -16.14567 -15.86888 -15.56470 -15.50372 -15.37263 -15.21189 -15.14576 -14.70958 -14.61537 -14.37717 -14.09907 -13.94572 -13.30934 -13.06182 -12.88249 -12.83167 -12.62234 -12.43890 -12.25283 -11.94001 -11.84898 -11.77298 -11.38325 -11.19631 -10.56677 -10.00867 -9.39801 -9.25514 -8.21070 -6.32249 0.13909 0.23559 0.40832 1.39051 1.42114 1.49951 1.71691 2.39233 2.49955 2.69586 2.92252 3.12473 3.33543 3.52194 3.56270 3.64595 3.87561 4.13853 4.15960 4.26644 4.38492 4.47103 4.54698 4.72577 4.78246 4.87946 4.94341 5.05304 5.10409 5.11371 5.22559 5.24550 5.37820 5.44799 5.61512 5.67311 5.77962 5.90647 6.12298 6.25807 6.57173 6.84535 7.36844 8.90804 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.003772 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.481510 B = 7422.270587 C = 9447.762465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.034 3.966 10 C 0.085 3.915 11 N -0.683 5.683 12 C 0.116 3.884 13 H 0.051 0.949 14 C -0.113 4.113 15 C -0.069 4.069 16 C -0.103 4.103 17 C -0.069 4.069 18 C -0.190 4.190 19 C 0.083 3.917 20 O -0.325 6.325 21 C 0.609 3.391 22 F -0.165 7.165 23 F -0.131 7.131 24 F -0.160 7.160 25 C -0.124 4.124 26 C -0.058 4.058 27 H 0.264 0.736 28 H -0.009 1.009 29 H -0.004 1.004 30 H 0.022 0.978 31 H 0.049 0.951 32 H 0.348 0.652 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.146 0.854 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.410 -21.690 -6.697 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.044 4.044 11 N -0.316 5.316 12 C 0.007 3.993 13 H 0.069 0.931 14 C -0.150 4.150 15 C -0.105 4.105 16 C -0.104 4.104 17 C -0.087 4.087 18 C -0.209 4.209 19 C 0.041 3.959 20 O -0.245 6.245 21 C 0.519 3.481 22 F -0.147 7.147 23 F -0.112 7.112 24 F -0.142 7.142 25 C -0.143 4.143 26 C -0.058 4.058 27 H 0.073 0.927 28 H 0.009 0.991 29 H 0.015 0.985 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.169 0.831 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.180 0.820 38 H 0.164 0.836 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.289 -21.443 -7.358 23.813 hybrid contribution 0.779 1.443 0.288 1.665 sum 8.067 -20.000 -7.071 22.695 Atomic orbital electron populations 1.70091 1.07734 1.27847 1.51317 1.25923 0.95742 1.03196 0.94594 0.85531 0.78334 0.78232 0.79138 1.19523 1.20625 1.18972 1.21568 0.93412 0.92374 1.51079 0.92444 1.18888 0.94239 0.92141 0.95062 1.21806 0.95617 0.88526 0.98412 1.60386 1.19767 1.00900 1.50529 1.21105 0.94917 0.92353 0.90934 0.93114 1.22517 1.00802 0.94204 0.97483 1.21017 0.97591 1.01709 0.90212 1.21008 0.97543 0.95976 0.95842 1.20717 0.96389 1.00057 0.91546 1.21550 1.00360 0.96726 1.02247 1.18555 0.92155 0.95221 0.89956 1.86384 1.59864 1.55371 1.22909 1.19217 0.75023 0.74811 0.79078 1.93304 1.44613 1.95924 1.80821 1.93308 1.63610 1.78330 1.75992 1.93295 1.90176 1.35282 1.95462 1.19905 1.01646 1.01534 0.91198 1.20461 0.93964 0.94979 0.96444 0.92716 0.99100 0.98548 0.96029 0.93226 0.83140 0.88402 0.88866 0.87843 0.89701 0.81967 0.83608 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.21 5.46 84.66 0.46 0.68 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.84 5.23 29.85 0.16 1.99 16 10 C 0.09 3.61 5.45 86.30 0.47 4.08 16 11 N -0.68 -23.28 6.33 -491.94 -3.11 -26.40 16 12 C 0.12 3.13 3.19 44.84 0.14 3.27 16 13 H 0.05 1.38 7.86 -2.39 -0.02 1.37 16 14 C -0.11 -2.03 6.74 31.51 0.21 -1.82 16 15 C -0.07 -1.19 6.77 30.53 0.21 -0.98 16 16 C -0.10 -2.38 6.14 -19.57 -0.12 -2.50 16 17 C -0.07 -1.43 10.03 22.29 0.22 -1.21 16 18 C -0.19 -4.46 8.26 22.34 0.18 -4.28 16 19 C 0.08 2.35 6.48 22.48 0.15 2.50 16 20 O -0.32 -9.08 10.37 -92.45 -0.96 -10.04 16 21 C 0.61 13.76 3.42 113.37 0.39 14.15 16 22 F -0.16 -3.70 15.56 44.97 0.70 -3.00 16 23 F -0.13 -2.86 17.53 44.97 0.79 -2.07 16 24 F -0.16 -3.22 15.57 44.97 0.70 -2.52 16 25 C -0.12 -3.83 9.51 22.40 0.21 -3.62 16 26 C -0.06 -1.63 5.65 -19.60 -0.11 -1.74 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 29 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 30 H 0.02 0.89 8.07 -2.38 -0.02 0.87 16 31 H 0.05 2.18 7.09 -2.38 -0.02 2.16 16 32 H 0.35 10.95 8.09 -89.70 -0.73 10.23 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.52 7.58 -2.39 -0.02 1.51 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.15 2.89 5.11 -2.91 -0.01 2.87 16 39 H 0.12 3.91 7.56 -2.91 -0.02 3.89 16 Total: -1.00 -67.20 337.13 3.60 -63.59 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.37 Total: 11.37 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 2.81 Total: -20.89 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.83 Total: -83.32 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.96 Total: -10.04 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 2.19 Total: -7.59 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.20 3.60 -63.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273309232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.333 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds