Wall clock time and date at job start Tue Mar 31 2020 10:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47716 * 2 1 4 4 C 1.50707 * 109.47127 * 239.99768 * 2 1 3 5 5 H 1.07996 * 120.00022 * 240.00813 * 4 2 1 6 6 C 1.37879 * 119.99585 * 60.00139 * 4 2 1 7 7 N 1.31511 * 120.00186 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46912 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46990 * 119.99936 * 8 6 4 11 11 H 1.48498 * 109.47528 * 240.00511 * 8 6 4 12 12 C 1.52999 * 109.47015 * 120.00278 * 2 1 3 13 13 S 1.81397 * 109.47238 * 299.99750 * 12 2 1 14 14 O 1.42101 * 110.54650 * 68.37197 * 13 12 2 15 15 O 1.42101 * 110.53998 * 291.62623 * 13 12 2 16 16 N 1.65597 * 104.45432 * 179.97438 * 13 12 2 17 17 C 1.46506 * 119.99791 * 64.99519 * 16 13 12 18 18 C 1.50701 * 109.46793 * 165.00139 * 17 16 13 19 19 C 1.38222 * 120.00984 * 105.00209 * 18 17 16 20 20 C 1.38224 * 120.02677 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.04857 * 0.02568 * 20 19 18 22 22 C 1.38173 * 120.02712 * 359.97438 * 21 20 19 23 23 C 1.38435 * 120.01619 * 284.72441 * 18 17 16 24 24 F 1.35102 * 120.02399 * 0.02562 * 23 18 17 25 25 H 1.08997 * 109.46787 * 300.00504 * 1 2 3 26 26 H 1.09000 * 109.46493 * 59.99350 * 1 2 3 27 27 H 1.08998 * 109.47610 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47143 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46815 * 300.00212 * 3 2 1 30 30 H 1.09001 * 109.46986 * 60.00120 * 3 2 1 31 31 H 0.96999 * 120.00163 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47627 * 179.97438 * 12 2 1 33 33 H 1.09004 * 109.47299 * 59.99394 * 12 2 1 34 34 H 0.96995 * 120.00100 * 245.27435 * 16 13 12 35 35 H 1.08998 * 109.47105 * 285.00387 * 17 16 13 36 36 H 1.09002 * 109.47033 * 45.00797 * 17 16 13 37 37 H 1.08000 * 119.98730 * 359.97438 * 19 18 17 38 38 H 1.07994 * 119.97710 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.98846 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.01302 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0529 -0.7409 3.9936 17 6 3.5014 -0.7984 4.2059 18 6 3.7858 -1.3268 5.5883 19 6 4.2386 -2.6223 5.7536 20 6 4.5001 -3.1071 7.0214 21 6 4.3085 -2.2972 8.1255 22 6 3.8559 -1.0019 7.9627 23 6 3.5991 -0.5132 6.6927 24 9 3.1614 0.7548 6.5319 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1302 1.4423 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6769 1.9563 0.8900 31 1 0.7089 1.1614 -3.4844 32 1 3.1300 -0.7218 1.2491 33 1 1.6765 -1.7490 1.2492 34 1 1.4559 -1.2185 4.5906 35 1 3.9513 -1.4589 3.4647 36 1 3.9233 0.2016 4.1053 37 1 4.3882 -3.2559 4.8919 38 1 4.8535 -4.1195 7.1496 39 1 4.5127 -2.6771 9.1156 40 1 3.7059 -0.3696 8.8254 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295157948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:59 Heat of formation + Delta-G solvation = -96.911694 kcal Electronic energy + Delta-G solvation = -24606.142998 eV Core-core repulsion = 20848.482902 eV Total energy + Delta-G solvation = -3757.660096 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.99974 -39.40587 -36.53985 -36.26929 -35.50418 -35.20202 -31.67093 -31.35333 -30.65640 -26.64027 -25.91040 -25.70634 -25.21859 -23.06768 -21.85394 -19.63260 -18.79812 -17.91685 -17.32309 -16.69337 -16.49823 -15.94410 -15.71550 -15.45135 -15.29294 -14.74795 -14.51209 -14.36949 -13.80185 -13.49565 -13.27767 -12.99543 -12.94445 -12.59842 -12.50161 -12.11923 -12.02909 -11.69814 -11.41244 -11.25101 -11.07945 -11.05052 -10.91228 -10.69965 -10.36119 -10.27005 -10.11974 -9.66555 -9.64251 -9.39856 -9.25468 -8.95144 -8.65717 -8.40637 -6.03631 -4.15717 0.67892 0.88799 0.99927 3.11280 3.24650 3.33116 3.35361 3.43303 4.01925 4.23802 4.32992 4.39003 4.45998 4.61729 4.80155 4.89273 5.01566 5.21629 5.23283 5.29698 5.56152 5.63063 5.69452 5.75179 5.82426 5.93888 6.02024 6.07091 6.37621 6.57725 6.70617 6.80480 6.91782 7.02444 7.11421 7.32300 7.51042 7.67856 7.98728 8.09917 8.32912 8.83007 9.49766 10.97701 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.003475 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.536616 B = 8055.241245 C = 8689.852283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.582 4.582 13 S 2.593 3.407 14 O -0.963 6.963 15 O -0.961 6.961 16 N -1.127 6.127 17 C 0.157 3.843 18 C -0.131 4.131 19 C -0.076 4.076 20 C -0.134 4.134 21 C -0.088 4.088 22 C -0.159 4.159 23 C 0.117 3.883 24 F -0.129 7.129 25 H 0.028 0.972 26 H 0.095 0.905 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.412 0.588 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 -7.616 18.677 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 C -0.222 4.222 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.716 4.716 13 S 2.691 3.309 14 O -0.954 6.954 15 O -0.951 6.951 16 N -0.883 5.883 17 C 0.031 3.969 18 C -0.133 4.133 19 C -0.094 4.094 20 C -0.153 4.153 21 C -0.106 4.106 22 C -0.178 4.178 23 C 0.097 3.903 24 F -0.107 7.107 25 H 0.046 0.954 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.245 0.755 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.915 -6.544 18.517 20.822 hybrid contribution 0.414 -1.048 -0.833 1.401 sum 7.329 -7.592 17.685 20.594 Atomic orbital electron populations 1.22274 0.96909 1.00634 1.02345 1.17940 0.92849 0.92244 0.89054 1.22275 0.99700 0.97785 1.02392 1.20982 1.31668 1.12057 0.89387 0.92250 1.24946 0.94907 0.94985 0.98952 1.69812 1.36351 1.22584 1.23372 0.86478 0.78628 0.79599 0.82920 1.19850 1.20970 1.20952 1.30533 1.11212 1.12917 1.16897 1.05676 0.74448 0.75256 0.75555 1.93554 1.29417 1.86641 1.85748 1.93546 1.78059 1.38027 1.85419 1.55916 1.13245 1.71187 1.47939 1.20093 0.81497 1.02504 0.92792 1.19991 1.03728 0.95021 0.94586 1.21074 0.96513 0.93663 0.98177 1.21223 1.01300 1.00437 0.92297 1.21056 0.97307 0.92859 0.99425 1.21197 1.03260 0.97487 0.95859 1.17670 0.98707 0.80017 0.93892 1.91570 1.86604 1.36153 1.96361 0.95357 0.88643 0.94471 0.94472 0.88659 0.95280 0.92795 0.86458 0.86222 0.75522 0.90242 0.89002 0.84503 0.85155 0.85029 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 4 C -0.50 -13.10 8.01 -34.44 -0.28 -13.37 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -24.12 9.35 55.43 0.52 -23.60 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C -0.58 -11.18 5.01 37.16 0.19 -11.00 16 13 S 2.59 48.58 4.49 -107.50 -0.48 48.10 16 14 O -0.96 -20.56 15.70 -57.54 -0.90 -21.46 16 15 O -0.96 -20.58 15.12 -57.54 -0.87 -21.45 16 16 N -1.13 -15.85 5.88 -11.65 -0.07 -15.92 16 17 C 0.16 1.90 5.95 -5.19 -0.03 1.87 16 18 C -0.13 -1.40 5.28 -104.55 -0.55 -1.95 16 19 C -0.08 -0.62 9.67 -39.59 -0.38 -1.01 16 20 C -0.13 -0.94 10.04 -39.58 -0.40 -1.33 16 21 C -0.09 -0.62 10.04 -39.59 -0.40 -1.02 16 22 C -0.16 -1.41 10.03 -39.51 -0.40 -1.80 16 23 C 0.12 1.34 7.25 -39.42 -0.29 1.06 16 24 F -0.13 -1.80 16.75 2.25 0.04 -1.76 16 25 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 26 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 30 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 33 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 34 H 0.41 5.14 8.61 -34.47 -0.30 4.84 16 35 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 36 H 0.09 1.21 7.63 -51.93 -0.40 0.81 16 37 H 0.14 0.87 8.00 -52.49 -0.42 0.45 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 40 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -32.74 338.70 -9.04 -41.78 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.22 Total: 6.28 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -2.13 Total: -32.58 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.45 Total: -39.52 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.77 Total: -42.91 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 48.58 SS G_CDS: -0.48 Total: 48.10 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.74 -9.04 -41.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295157948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.133 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds