Wall clock time and date at job start Tue Mar 31 2020 10:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47716 * 2 1 4 4 C 1.50707 * 109.47127 * 239.99768 * 2 1 3 5 5 H 1.07996 * 120.00022 * 240.00813 * 4 2 1 6 6 C 1.37879 * 119.99585 * 60.00139 * 4 2 1 7 7 N 1.31511 * 120.00186 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46912 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46990 * 119.99936 * 8 6 4 11 11 H 1.48498 * 109.47528 * 240.00511 * 8 6 4 12 12 C 1.52999 * 109.47015 * 120.00278 * 2 1 3 13 13 S 1.81397 * 109.47238 * 299.99750 * 12 2 1 14 14 O 1.42101 * 110.54650 * 68.37197 * 13 12 2 15 15 O 1.42101 * 110.53998 * 291.62623 * 13 12 2 16 16 N 1.65597 * 104.45432 * 179.97438 * 13 12 2 17 17 C 1.46506 * 119.99791 * 64.99519 * 16 13 12 18 18 C 1.50701 * 109.46793 * 165.00139 * 17 16 13 19 19 C 1.38222 * 120.00984 * 105.00209 * 18 17 16 20 20 C 1.38224 * 120.02677 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.04857 * 0.02568 * 20 19 18 22 22 C 1.38173 * 120.02712 * 359.97438 * 21 20 19 23 23 C 1.38435 * 120.01619 * 284.72441 * 18 17 16 24 24 F 1.35102 * 120.02399 * 0.02562 * 23 18 17 25 25 H 1.08997 * 109.46787 * 300.00504 * 1 2 3 26 26 H 1.09000 * 109.46493 * 59.99350 * 1 2 3 27 27 H 1.08998 * 109.47610 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47143 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46815 * 300.00212 * 3 2 1 30 30 H 1.09001 * 109.46986 * 60.00120 * 3 2 1 31 31 H 0.96999 * 120.00163 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47627 * 179.97438 * 12 2 1 33 33 H 1.09004 * 109.47299 * 59.99394 * 12 2 1 34 34 H 0.96995 * 120.00100 * 245.27435 * 16 13 12 35 35 H 1.08998 * 109.47105 * 285.00387 * 17 16 13 36 36 H 1.09002 * 109.47033 * 45.00797 * 17 16 13 37 37 H 1.08000 * 119.98730 * 359.97438 * 19 18 17 38 38 H 1.07994 * 119.97710 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.98846 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.01302 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0529 -0.7409 3.9936 17 6 3.5014 -0.7984 4.2059 18 6 3.7858 -1.3268 5.5883 19 6 4.2386 -2.6223 5.7536 20 6 4.5001 -3.1071 7.0214 21 6 4.3085 -2.2972 8.1255 22 6 3.8559 -1.0019 7.9627 23 6 3.5991 -0.5132 6.6927 24 9 3.1614 0.7548 6.5319 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1302 1.4423 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6769 1.9563 0.8900 31 1 0.7089 1.1614 -3.4844 32 1 3.1300 -0.7218 1.2491 33 1 1.6765 -1.7490 1.2492 34 1 1.4559 -1.2185 4.5906 35 1 3.9513 -1.4589 3.4647 36 1 3.9233 0.2016 4.1053 37 1 4.3882 -3.2559 4.8919 38 1 4.8535 -4.1195 7.1496 39 1 4.5127 -2.6771 9.1156 40 1 3.7059 -0.3696 8.8254 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295157948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:59 Heat of formation + Delta-G solvation = -118.419115 kcal Electronic energy + Delta-G solvation = -24607.075630 eV Core-core repulsion = 20848.482902 eV Total energy + Delta-G solvation = -3758.592728 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90119 -40.06509 -38.13609 -38.11829 -36.92374 -36.40586 -33.62614 -32.12231 -31.32441 -28.32407 -27.68958 -27.25752 -26.75879 -23.71594 -22.58374 -21.40029 -20.29978 -18.95683 -18.52319 -17.89435 -17.57036 -17.39719 -16.87932 -16.70412 -16.52918 -16.41570 -15.70279 -15.09591 -15.05776 -14.73970 -14.58651 -14.42364 -14.22618 -13.96435 -13.80116 -13.50451 -13.20544 -13.05032 -12.90827 -12.87745 -12.73695 -12.51077 -12.42928 -12.18487 -12.11186 -11.95088 -11.89774 -11.56258 -11.38674 -10.71696 -10.41788 -10.39924 -9.96790 -9.64493 -8.02043 -6.20832 -0.65750 0.15971 0.27082 1.44426 1.47370 1.56956 1.91329 2.45270 2.68303 2.85723 3.20387 3.29845 3.33723 3.51608 3.79319 4.00064 4.09283 4.18921 4.28821 4.38246 4.42419 4.56914 4.60995 4.74674 4.87054 4.88199 4.96653 5.00022 5.09254 5.13322 5.23827 5.38904 5.40095 5.48399 5.50988 5.65897 5.95930 5.97351 6.03164 6.12128 6.34420 6.84602 7.47684 8.98124 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.003475 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.536616 B = 8055.241245 C = 8689.852283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.515 4.515 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.581 4.581 13 S 2.609 3.391 14 O -0.994 6.994 15 O -0.993 6.993 16 N -1.111 6.111 17 C 0.147 3.853 18 C -0.145 4.145 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.082 4.082 22 C -0.165 4.165 23 C 0.080 3.920 24 F -0.155 7.155 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.421 0.579 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.145 -10.605 19.942 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.554 4.554 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.187 1.187 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.714 4.714 13 S 2.708 3.292 14 O -0.984 6.984 15 O -0.982 6.982 16 N -0.871 5.871 17 C 0.022 3.978 18 C -0.147 4.147 19 C -0.094 4.094 20 C -0.145 4.145 21 C -0.100 4.100 22 C -0.184 4.184 23 C 0.060 3.940 24 F -0.134 7.134 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.256 0.744 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.177 0.823 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.627 -9.539 19.790 23.603 hybrid contribution -0.072 -0.171 -1.106 1.122 sum 8.555 -9.710 18.684 22.728 Atomic orbital electron populations 1.22215 0.97890 1.00543 1.01218 1.17939 0.92272 0.92144 0.91032 1.22210 0.99911 0.98458 1.01229 1.21337 1.31540 1.12285 0.90206 0.91479 1.25709 0.95212 0.95661 1.01797 1.69961 1.37327 1.23790 1.23752 0.85533 0.77985 0.78748 0.79509 1.18654 1.21130 1.21101 1.30425 1.12816 1.13450 1.14704 1.04857 0.73517 0.74895 0.75975 1.93503 1.31511 1.87046 1.86342 1.93504 1.78420 1.40294 1.86022 1.55446 1.14617 1.70634 1.46446 1.20349 0.79841 1.02568 0.95044 1.19953 1.05336 0.96151 0.93298 1.21380 0.95574 0.92655 0.99805 1.21652 0.99631 1.01697 0.91528 1.21479 0.95560 0.91793 1.01154 1.21441 1.03121 0.98655 0.95171 1.18134 1.00849 0.79508 0.95522 1.91498 1.87312 1.37952 1.96588 0.95144 0.91100 0.93953 0.93936 0.91142 0.95099 0.92999 0.84019 0.83955 0.74393 0.87187 0.90802 0.82310 0.81996 0.81920 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.05 7.78 71.98 0.56 -7.49 16 2 C 0.07 3.28 0.52 -52.93 -0.03 3.25 16 3 C -0.16 -8.02 7.78 71.98 0.56 -7.46 16 4 C -0.51 -26.41 8.01 25.60 0.21 -26.20 16 5 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 6 C 0.02 0.81 5.15 84.66 0.44 1.25 16 7 N -0.91 -50.51 9.35 21.45 0.20 -50.31 16 8 Si 0.96 41.76 29.54 68.60 2.03 43.79 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C -0.58 -21.39 5.01 71.98 0.36 -21.02 16 13 S 2.61 96.83 4.49 -56.49 -0.25 96.58 16 14 O -0.99 -42.49 15.70 -127.65 -2.00 -44.49 16 15 O -0.99 -43.08 15.12 -127.65 -1.93 -45.01 16 16 N -1.11 -30.13 5.88 -190.78 -1.12 -31.26 16 17 C 0.15 3.37 5.95 85.63 0.51 3.88 16 18 C -0.14 -2.88 5.28 -19.82 -0.10 -2.98 16 19 C -0.08 -1.00 9.67 22.26 0.22 -0.78 16 20 C -0.13 -1.24 10.04 22.27 0.22 -1.01 16 21 C -0.08 -0.86 10.04 22.26 0.22 -0.64 16 22 C -0.17 -2.66 10.03 22.31 0.22 -2.44 16 23 C 0.08 1.79 7.25 22.38 0.16 1.95 16 24 F -0.15 -4.52 16.75 44.97 0.75 -3.76 16 25 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 26 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 30 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 31 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 33 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 34 H 0.42 10.05 8.61 -96.75 -0.83 9.22 16 35 H 0.11 1.80 7.95 -2.39 -0.02 1.78 16 36 H 0.07 1.95 7.63 -2.39 -0.02 1.93 16 37 H 0.16 1.34 8.00 -2.91 -0.02 1.31 16 38 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 40 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -71.97 338.70 1.45 -70.52 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.23 Total: 23.64 kcal Atomic # 6 Polarization: -63.24 SS G_CDS: 3.55 Total: -59.70 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -0.92 Total: -81.56 kcal Atomic # 8 Polarization: -85.57 SS G_CDS: -3.93 Total: -89.50 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.75 Total: -3.76 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 96.83 SS G_CDS: -0.25 Total: 96.58 kcal Total: -71.97 1.45 -70.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295157948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.898 kcal (2) G-P(sol) polarization free energy of solvation -71.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds