Wall clock time and date at job start Tue Mar 31 2020 10:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47027 * 2 1 4 4 C 1.50700 * 109.47216 * 239.99806 * 2 1 3 5 5 H 1.07989 * 120.00316 * 240.00318 * 4 2 1 6 6 C 1.37884 * 119.99553 * 59.99999 * 4 2 1 7 7 N 1.31511 * 119.99973 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99708 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47330 * 60.00125 * 8 6 4 10 10 H 1.48505 * 109.47332 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47439 * 300.00133 * 8 6 4 12 12 C 1.53006 * 109.46889 * 119.99966 * 2 1 3 13 13 S 1.81393 * 109.47382 * 300.00061 * 12 2 1 14 14 O 1.42097 * 110.54416 * 68.37588 * 13 12 2 15 15 O 1.42107 * 110.54069 * 291.62630 * 13 12 2 16 16 N 1.65596 * 104.45000 * 180.02562 * 13 12 2 17 17 C 1.46505 * 120.00034 * 64.99722 * 16 13 12 18 18 C 1.50706 * 109.47014 * 164.99846 * 17 16 13 19 19 C 1.38244 * 119.97491 * 269.72620 * 18 17 16 20 20 C 1.38201 * 120.02142 * 179.72306 * 19 18 17 21 21 C 1.38459 * 119.97601 * 0.57371 * 20 19 18 22 22 F 1.35094 * 120.02797 * 179.67746 * 21 20 19 23 23 C 1.38461 * 119.94519 * 359.70287 * 21 20 19 24 24 C 1.38193 * 119.98059 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.46911 * 299.99991 * 1 2 3 26 26 H 1.08996 * 109.47095 * 59.99608 * 1 2 3 27 27 H 1.08997 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46946 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47503 * 300.00142 * 3 2 1 30 30 H 1.09001 * 109.47268 * 60.00227 * 3 2 1 31 31 H 0.96999 * 119.99745 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46452 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.46693 * 60.00478 * 12 2 1 34 34 H 0.96999 * 120.00358 * 244.99430 * 16 13 12 35 35 H 1.09000 * 109.46864 * 45.00654 * 17 16 13 36 36 H 1.09000 * 109.47078 * 284.99907 * 17 16 13 37 37 H 1.08000 * 119.98716 * 359.97438 * 19 18 17 38 38 H 1.07996 * 120.01399 * 180.25476 * 20 19 18 39 39 H 1.08009 * 120.01051 * 179.97438 * 23 21 20 40 40 H 1.07999 * 119.99486 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0541 -0.7401 3.9936 17 6 3.5027 -0.7965 4.2054 18 6 3.7881 -1.3243 5.5878 19 6 3.9050 -0.4484 6.6510 20 6 4.1610 -0.9318 7.9202 21 6 4.3122 -2.2929 8.1246 22 9 4.5690 -2.7660 9.3636 23 6 4.2006 -3.1686 7.0579 24 6 3.9379 -2.6836 5.7908 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7096 1.1618 -3.4843 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -1.7490 1.2492 34 1 1.4575 -1.2147 4.5934 35 1 3.9238 0.2038 4.1043 36 1 3.9528 -1.4569 3.4642 37 1 3.7922 0.6136 6.4904 38 1 4.2483 -0.2478 8.7513 39 1 4.3187 -4.2305 7.2161 40 1 3.8512 -3.3664 4.9586 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295270333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:07 Heat of formation + Delta-G solvation = -98.912962 kcal Electronic energy + Delta-G solvation = -24140.575465 eV Core-core repulsion = 20382.828588 eV Total energy + Delta-G solvation = -3757.746878 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.19166 -39.54078 -36.59025 -36.29862 -35.44123 -35.17754 -31.69146 -31.46823 -30.78067 -26.66707 -25.73919 -25.67700 -25.23089 -23.37983 -21.79580 -19.66410 -18.82306 -18.01518 -17.45013 -16.70296 -16.56720 -15.94180 -15.85715 -15.42667 -15.26521 -14.76474 -14.56904 -14.24187 -14.04632 -13.80745 -13.24968 -13.05392 -12.91304 -12.68778 -12.52576 -12.17280 -12.10038 -11.52997 -11.45241 -11.32942 -11.10125 -11.07412 -10.96853 -10.72675 -10.43002 -10.29631 -10.14210 -9.69714 -9.66886 -9.44336 -9.31666 -8.96703 -8.69843 -8.42019 -6.05486 -4.17783 0.62377 0.90559 0.94960 3.05535 3.25309 3.31135 3.32389 3.42397 3.93616 4.23619 4.34108 4.37096 4.41617 4.57336 4.75082 4.92176 4.94893 5.19698 5.22974 5.32850 5.58930 5.61568 5.64403 5.69338 5.78987 5.85558 5.93419 6.20641 6.34848 6.54808 6.67905 6.77465 6.88302 6.99026 7.07856 7.29475 7.48290 7.65623 7.96231 8.07317 8.30721 8.80563 9.47771 10.95785 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.003020 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.792029 B = 9267.821398 C = 9839.488501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.593 3.407 14 O -0.963 6.963 15 O -0.964 6.964 16 N -1.128 6.128 17 C 0.155 3.845 18 C -0.104 4.104 19 C -0.071 4.071 20 C -0.156 4.156 21 C 0.099 3.901 22 F -0.141 7.141 23 C -0.156 4.156 24 C -0.075 4.075 25 H 0.028 0.972 26 H 0.095 0.905 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.413 0.587 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.709 -5.778 17.172 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.716 4.716 13 S 2.691 3.309 14 O -0.953 6.953 15 O -0.953 6.953 16 N -0.885 5.885 17 C 0.029 3.971 18 C -0.106 4.106 19 C -0.090 4.090 20 C -0.175 4.175 21 C 0.080 3.920 22 F -0.120 7.120 23 C -0.175 4.175 24 C -0.093 4.093 25 H 0.046 0.954 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.246 0.754 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.216 -4.778 17.064 18.779 hybrid contribution 0.554 -1.418 -0.578 1.628 sum 6.770 -6.196 16.486 18.868 Atomic orbital electron populations 1.22282 0.96934 1.00648 1.02341 1.17921 0.92814 0.92206 0.89028 1.22278 0.99704 0.97803 1.02380 1.20907 1.31861 1.12137 0.89428 0.92345 1.24938 0.94868 0.94974 0.98936 1.69789 1.36203 1.22521 1.23621 0.86593 0.79139 0.79710 0.82150 1.20280 1.21188 1.20269 1.30529 1.11240 1.12927 1.16872 1.05650 0.74416 0.75233 0.75588 1.93559 1.29434 1.86632 1.85723 1.93539 1.78135 1.38156 1.85511 1.55952 1.13400 1.71362 1.47738 1.20182 0.81207 1.02404 0.93258 1.19964 1.01445 0.93596 0.95607 1.21075 0.96236 1.00641 0.91065 1.21179 1.03725 0.93706 0.98843 1.17791 1.01696 0.92659 0.79895 1.91501 1.91531 1.89050 1.39909 1.21161 1.03855 1.00256 0.92222 1.21034 0.96728 0.94961 0.96609 0.95363 0.88643 0.94462 0.94464 0.88665 0.95299 0.92661 0.86420 0.86207 0.75441 0.89073 0.90558 0.84382 0.84562 0.84580 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 2 C 0.08 1.95 0.52 -155.66 -0.08 1.86 16 3 C -0.16 -3.93 7.77 37.15 0.29 -3.64 16 4 C -0.50 -12.95 8.01 -34.44 -0.28 -13.22 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.81 9.35 55.43 0.52 -23.29 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 C -0.58 -10.72 5.01 37.16 0.19 -10.53 16 13 S 2.59 45.26 4.49 -107.50 -0.48 44.78 16 14 O -0.96 -19.54 15.70 -57.54 -0.90 -20.45 16 15 O -0.96 -19.14 15.12 -57.54 -0.87 -20.01 16 16 N -1.13 -14.03 5.88 -11.65 -0.07 -14.10 16 17 C 0.16 1.61 6.26 -5.19 -0.03 1.58 16 18 C -0.10 -0.97 5.28 -104.61 -0.55 -1.52 16 19 C -0.07 -0.64 9.70 -39.59 -0.38 -1.03 16 20 C -0.16 -1.35 10.03 -39.51 -0.40 -1.75 16 21 C 0.10 0.93 7.30 -39.42 -0.29 0.64 16 22 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 23 C -0.16 -1.30 10.03 -39.52 -0.40 -1.70 16 24 C -0.07 -0.61 9.70 -39.59 -0.38 -1.00 16 25 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.12 1.91 8.14 -51.92 -0.42 1.48 16 33 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 34 H 0.41 4.51 8.61 -34.47 -0.30 4.21 16 35 H 0.09 0.97 7.63 -51.93 -0.40 0.57 16 36 H 0.08 0.65 8.09 -51.93 -0.42 0.24 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -31.49 339.43 -9.02 -40.51 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.23 Total: 5.92 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -2.12 Total: -32.39 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.45 Total: -37.39 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.77 Total: -40.45 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 45.26 SS G_CDS: -0.48 Total: 44.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.49 -9.02 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295270333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.400 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds