Wall clock time and date at job start Tue Mar 31 2020 11:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47093 * 2 1 4 4 C 1.46496 * 119.99813 * 278.06443 * 3 2 1 5 5 C 1.50703 * 109.47514 * 270.00342 * 4 3 2 6 6 C 1.33387 * 125.20041 * 90.00181 * 5 4 3 7 7 C 1.38424 * 114.91773 * 179.97438 * 6 5 4 8 8 C 1.33391 * 114.92111 * 359.97438 * 7 6 5 9 9 S 1.75881 * 125.20166 * 269.69283 * 5 4 3 10 10 C 1.34775 * 120.00457 * 98.07150 * 3 2 1 11 11 O 1.21545 * 120.00298 * 186.29458 * 10 3 2 12 12 C 1.47883 * 119.99774 * 6.01516 * 10 3 2 13 13 C 1.39926 * 120.02620 * 133.84929 * 12 10 3 14 14 C 1.38323 * 120.35798 * 179.78671 * 13 12 10 15 15 C 1.37750 * 120.41323 * 0.47120 * 14 13 12 16 16 C 1.40744 * 120.04312 * 359.78416 * 15 14 13 17 17 C 1.41435 * 120.18012 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00048 * 329.98476 * 17 16 15 19 19 C 1.39932 * 119.99821 * 149.98488 * 17 16 15 20 20 N 1.30827 * 120.00308 * 349.48267 * 19 17 16 21 21 Si 1.86804 * 119.99958 * 169.48335 * 19 17 16 22 22 H 1.48499 * 109.47051 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47059 * 119.99895 * 21 19 17 24 24 H 1.48499 * 109.47102 * 239.99891 * 21 19 17 25 25 C 1.38999 * 120.02739 * 314.12676 * 12 10 3 26 26 H 1.08996 * 109.47212 * 190.24070 * 1 2 3 27 27 H 1.08998 * 109.47430 * 310.24383 * 1 2 3 28 28 H 1.08999 * 109.46779 * 70.24074 * 1 2 3 29 29 H 1.09000 * 109.47465 * 239.99552 * 2 1 3 30 30 H 1.09005 * 109.46857 * 119.99219 * 2 1 3 31 31 H 1.09008 * 109.46947 * 30.00216 * 4 3 2 32 32 H 1.08998 * 109.47250 * 150.00226 * 4 3 2 33 33 H 1.08004 * 122.54496 * 359.94990 * 6 5 4 34 34 H 1.07998 * 122.53915 * 180.02562 * 7 6 5 35 35 H 1.08000 * 125.19834 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.81649 * 0.02562 * 13 12 10 37 37 H 1.08004 * 119.79061 * 180.21614 * 14 13 12 38 38 H 1.08008 * 119.97985 * 179.76670 * 15 14 13 39 39 H 0.97001 * 119.99789 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.19866 * 359.95364 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0946 2.1311 -1.2562 5 6 3.4471 1.9193 -1.8864 6 6 3.7503 0.9468 -2.7475 7 6 5.0602 0.9517 -3.1951 8 6 5.8204 1.9285 -2.6979 9 16 4.8649 2.9212 -1.6048 10 6 2.3975 1.9620 1.1556 11 8 2.6935 3.1407 1.1749 12 6 2.4474 1.1666 2.4013 13 6 3.5587 1.2584 3.2465 14 6 3.6107 0.5209 4.4156 15 6 2.5739 -0.3195 4.7566 16 6 1.4501 -0.4291 3.9163 17 6 0.3837 -1.2907 4.2638 18 1 0.5767 -2.1835 4.8401 19 6 -0.9213 -0.9863 3.8610 20 7 -1.1905 0.1859 3.3463 21 14 -2.2793 -2.2539 4.0581 22 1 -1.7190 -3.4897 4.6617 23 1 -3.3405 -1.7089 4.9424 24 1 -2.8579 -2.5705 2.7277 25 6 1.3930 0.3229 2.7306 26 1 -0.3633 -1.0112 0.1827 27 1 -0.3634 0.6639 0.7844 28 1 -0.3633 0.3474 -0.9672 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.3181 1.7808 -1.9362 32 1 1.9497 3.1925 -1.0551 33 1 3.0287 0.2111 -3.0707 34 1 5.4377 0.2206 -3.8946 35 1 6.8623 2.0878 -2.9338 36 1 4.3786 1.9115 2.9866 37 1 4.4714 0.6014 5.0630 38 1 2.6235 -0.8950 5.6692 39 1 -2.0952 0.3967 3.0667 40 1 0.5349 0.2461 2.0793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298816144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:48 Heat of formation + Delta-G solvation = 23.984560 kcal Electronic energy + Delta-G solvation = -23886.449244 eV Core-core repulsion = 20564.800828 eV Total energy + Delta-G solvation = -3321.648416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72042 -37.80068 -37.01486 -35.52864 -33.67288 -31.86395 -30.07040 -29.47605 -29.24607 -26.07599 -25.33533 -23.32313 -23.01415 -21.59960 -20.97996 -19.35543 -18.69090 -17.29248 -17.03511 -16.34415 -15.83627 -15.44479 -15.17030 -14.88985 -14.48126 -13.86783 -13.42428 -13.34679 -12.93277 -12.79893 -12.74653 -12.66184 -12.43151 -12.22083 -12.01115 -11.66665 -11.52028 -11.26061 -11.21006 -11.11589 -10.79890 -10.64204 -10.56187 -10.46996 -10.06422 -9.62235 -9.31841 -9.10173 -8.60754 -8.36883 -8.34388 -7.60799 -7.44472 -6.79393 -4.47823 1.02719 1.74721 2.14825 2.32333 2.73550 2.75987 3.03242 3.07928 3.09722 3.53837 3.65781 3.88165 4.55528 4.88322 5.04676 5.11005 5.35216 5.45517 5.50027 5.54857 5.61537 5.71737 5.79210 5.89901 6.13108 6.14817 6.16209 6.31260 6.36487 6.41910 6.52504 6.64921 6.70667 6.90880 7.00275 7.04051 7.18674 7.36480 7.67627 7.73749 7.88245 7.96050 8.11612 8.46115 8.76065 8.79466 8.83057 10.15516 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.004239 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.638185 B = 6604.254087 C = 7416.796345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.607 5.607 4 C 0.184 3.816 5 C -0.186 4.186 6 C -0.135 4.135 7 C -0.137 4.137 8 C -0.228 4.228 9 S 0.130 5.870 10 C 0.573 3.427 11 O -0.549 6.549 12 C -0.123 4.123 13 C -0.184 4.184 14 C -0.104 4.104 15 C -0.201 4.201 16 C 0.100 3.900 17 C -0.464 4.464 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.804 5.804 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.272 1.272 25 C -0.136 4.136 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.160 0.840 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.280 0.720 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 -0.768 -12.060 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 N -0.339 5.339 4 C 0.059 3.941 5 C -0.305 4.305 6 C -0.167 4.167 7 C -0.168 4.168 8 C -0.364 4.364 9 S 0.394 5.606 10 C 0.365 3.635 11 O -0.427 6.427 12 C -0.126 4.126 13 C -0.204 4.204 14 C -0.122 4.122 15 C -0.220 4.220 16 C 0.097 3.903 17 C -0.494 4.494 18 H 0.097 0.903 19 C -0.140 4.140 20 N -0.430 5.430 21 Si 0.731 3.269 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.197 1.197 25 C -0.155 4.155 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.058 1.282 -11.245 12.397 hybrid contribution -0.889 -1.827 -0.743 2.163 sum 4.169 -0.544 -11.988 12.704 Atomic orbital electron populations 1.22327 0.95659 1.03324 1.01914 1.21853 0.94612 0.82072 1.03936 1.47938 1.65503 1.14644 1.05840 1.19721 0.90349 0.98648 0.85397 1.25068 1.00546 1.01198 1.03714 1.20095 0.97064 0.99672 0.99827 1.20105 0.93677 1.00138 1.02893 1.25722 1.03957 1.02031 1.04667 1.84696 1.01796 1.30606 1.43546 1.18991 0.74265 0.86755 0.83502 1.90662 1.49632 1.16075 1.86290 1.19465 0.97988 1.00560 0.94590 1.20330 0.98234 1.04756 0.97090 1.20490 0.97832 0.97786 0.96103 1.21228 0.97208 1.03638 0.99971 1.17575 0.91662 0.91326 0.89689 1.19556 0.91034 1.07956 1.30862 0.90345 1.25832 1.00022 0.95285 0.92893 1.69771 1.22056 1.19326 1.31868 0.86277 0.80329 0.81381 0.78886 1.18499 1.20012 1.19710 1.22201 0.97772 0.97368 0.98193 0.91502 0.89978 0.93493 0.91727 0.87731 0.88949 0.88936 0.84528 0.84699 0.82289 0.88718 0.88704 0.88552 0.90932 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.13 37.16 0.34 -2.42 16 2 C 0.10 1.59 5.59 -4.04 -0.02 1.57 16 3 N -0.61 -10.78 2.46 -176.16 -0.43 -11.21 16 4 C 0.18 2.74 5.96 -5.19 -0.03 2.71 16 5 C -0.19 -2.66 6.09 -36.00 -0.22 -2.88 16 6 C -0.14 -1.68 10.05 -41.21 -0.41 -2.09 16 7 C -0.14 -1.58 10.18 -41.21 -0.42 -2.00 16 8 C -0.23 -2.70 11.23 29.04 0.33 -2.37 16 9 S 0.13 1.86 23.33 -107.50 -2.51 -0.65 16 10 C 0.57 12.53 7.26 -12.31 -0.09 12.44 16 11 O -0.55 -13.06 16.55 5.33 0.09 -12.97 16 12 C -0.12 -2.88 5.08 -105.03 -0.53 -3.42 16 13 C -0.18 -4.24 9.70 -38.92 -0.38 -4.62 16 14 C -0.10 -2.30 10.01 -39.73 -0.40 -2.69 16 15 C -0.20 -4.71 9.78 -38.81 -0.38 -5.09 16 16 C 0.10 2.50 5.53 -106.87 -0.59 1.91 16 17 C -0.46 -11.48 9.06 -37.73 -0.34 -11.82 16 18 H 0.08 1.88 7.87 -52.49 -0.41 1.47 16 19 C 0.08 1.78 5.25 -17.35 -0.09 1.68 16 20 N -0.80 -19.37 10.85 55.55 0.60 -18.77 16 21 Si 0.91 17.62 29.57 -169.99 -5.03 12.59 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 25 C -0.14 -3.27 6.00 -38.44 -0.23 -3.50 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.56 6.38 -51.93 -0.33 1.23 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.10 1.97 5.05 -51.93 -0.26 1.71 16 31 H 0.09 1.11 8.07 -51.92 -0.42 0.69 16 32 H 0.09 1.48 7.34 -51.93 -0.38 1.10 16 33 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 37 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 39 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 40 H 0.15 3.41 2.06 -52.49 -0.11 3.30 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -28.13 347.79 -10.36 -38.49 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.85 Total: 9.86 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.47 Total: -22.58 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 0.17 Total: -29.98 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.51 Total: -0.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.13 -10.36 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298816144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.477 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds