Wall clock time and date at job start Tue Mar 31 2020 11:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35708 * 116.99858 * 2 1 4 4 C 1.39112 * 119.88738 * 0.02562 * 3 2 1 5 5 C 1.37610 * 120.15927 * 179.97438 * 4 3 2 6 6 C 1.39829 * 119.93346 * 359.74545 * 5 4 3 7 7 C 1.47418 * 120.10838 * 180.27754 * 6 5 4 8 8 O 1.21611 * 120.00366 * 180.25608 * 7 6 5 9 9 N 1.34780 * 120.00155 * 0.25440 * 7 6 5 10 10 C 1.39868 * 120.00021 * 174.89029 * 9 7 6 11 11 C 1.39307 * 119.94648 * 325.54455 * 10 9 7 12 12 C 1.38483 * 120.42541 * 179.76568 * 11 10 9 13 13 C 1.37693 * 120.32325 * 0.51284 * 12 11 10 14 14 C 1.40742 * 119.88512 * 359.74100 * 13 12 11 15 15 C 1.41406 * 120.20544 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00702 * 25.14438 * 15 14 13 17 17 C 1.39937 * 120.00036 * 205.13767 * 15 14 13 18 18 N 1.30834 * 119.99875 * 16.79005 * 17 15 14 19 19 Si 1.86796 * 120.00254 * 196.78911 * 17 15 14 20 20 H 1.48505 * 109.47257 * 60.00001 * 19 17 15 21 21 H 1.48498 * 109.47262 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47188 * 300.00182 * 19 17 15 23 23 C 1.38259 * 119.95195 * 145.81709 * 10 9 7 24 24 C 1.39992 * 119.77409 * 0.53090 * 6 5 4 25 25 F 1.35107 * 120.07735 * 179.72312 * 24 6 5 26 26 C 1.38055 * 119.84503 * 359.44692 * 24 6 5 27 27 H 1.08994 * 109.47097 * 60.00162 * 1 2 3 28 28 H 1.09006 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47497 * 300.00308 * 1 2 3 30 30 H 1.07998 * 119.91742 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.02718 * 180.02562 * 5 4 3 32 32 H 0.96994 * 120.00159 * 354.88714 * 9 7 6 33 33 H 1.08001 * 119.78804 * 359.97438 * 11 10 9 34 34 H 1.07995 * 119.84421 * 180.23265 * 12 11 10 35 35 H 1.07999 * 120.05853 * 179.77046 * 13 12 11 36 36 H 0.96995 * 119.99728 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.15594 * 359.96271 * 23 10 9 38 38 H 1.07995 * 119.97304 * 180.27789 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2851 2.3744 0.0005 5 6 1.9040 3.6034 0.0011 6 6 3.3001 3.6817 0.0065 7 6 3.9671 4.9963 0.0132 8 8 5.1814 5.0621 0.0132 9 7 3.2311 6.1254 0.0194 10 6 3.8599 7.3695 0.1337 11 6 5.0078 7.4996 0.9123 12 6 5.6412 8.7256 1.0284 13 6 5.1366 9.8326 0.3835 14 6 3.9747 9.7175 -0.4023 15 6 3.4510 10.8498 -1.0680 16 1 4.1005 11.6734 -1.3253 17 6 2.0911 10.9032 -1.3937 18 7 1.2470 10.0894 -0.8132 19 14 1.4809 12.1364 -2.6571 20 1 2.1517 11.8853 -3.9580 21 1 0.0121 11.9916 -2.8209 22 1 1.7938 13.5130 -2.1964 23 6 3.3382 8.4695 -0.5216 24 6 4.0622 2.5074 0.0000 25 9 5.4115 2.5759 -0.0005 26 6 3.4317 1.2792 0.0000 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2068 2.3141 0.0014 31 1 1.3119 4.5066 0.0019 32 1 2.2653 6.0752 -0.0554 33 1 5.4082 6.6380 1.4258 34 1 6.5326 8.8150 1.6314 35 1 5.6319 10.7874 0.4801 36 1 0.3045 10.1262 -1.0392 37 1 2.4462 8.3704 -1.1223 38 1 4.0176 0.3720 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313453155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:37 Heat of formation + Delta-G solvation = -66.178255 kcal Electronic energy + Delta-G solvation = -24782.548569 eV Core-core repulsion = 20890.777223 eV Total energy + Delta-G solvation = -3891.771346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.88922 -40.57177 -39.59523 -37.57271 -36.81033 -34.31526 -33.33278 -31.49294 -30.45512 -29.52448 -28.44895 -27.56754 -25.25019 -23.91390 -22.91310 -21.38580 -21.03891 -19.68934 -18.86008 -17.61050 -17.50833 -17.00135 -16.29636 -16.19863 -15.66619 -15.51628 -15.06623 -14.97974 -14.74927 -14.66758 -14.25220 -13.84003 -13.15335 -13.08864 -12.87917 -12.71553 -12.66379 -12.44529 -12.33254 -11.66633 -11.40485 -11.32170 -11.20674 -11.12381 -10.72322 -10.66237 -10.07318 -9.73564 -9.48617 -9.21003 -9.19345 -8.95987 -8.61232 -7.38156 -7.01856 -6.70025 -4.37471 0.60976 0.88383 2.60061 2.69844 2.85311 3.04919 3.07552 3.09011 3.25022 3.56426 3.76741 3.92720 4.11882 4.32105 4.55764 4.63794 4.69680 4.74307 4.81677 4.94202 5.05759 5.09369 5.56548 5.67590 5.71112 5.83437 5.89433 6.28077 6.32939 6.64661 6.68089 6.86843 6.89403 7.04658 7.06538 7.24703 7.60558 7.67398 7.93225 8.02526 8.14270 8.30995 8.53919 8.72959 8.88370 8.95281 10.18281 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.003236 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.779575 B = 8651.127458 C =10040.480490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.178 3.822 4 C -0.227 4.227 5 C -0.016 4.016 6 C -0.202 4.202 7 C 0.551 3.449 8 O -0.512 6.512 9 N -0.658 5.658 10 C 0.145 3.855 11 C -0.225 4.225 12 C -0.086 4.086 13 C -0.227 4.227 14 C 0.120 3.880 15 C -0.463 4.463 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.801 5.801 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.180 4.180 24 C 0.200 3.800 25 F -0.107 7.107 26 C -0.203 4.203 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.400 0.600 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.279 0.721 37 H 0.123 0.877 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -17.035 0.808 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.131 3.869 4 C -0.246 4.246 5 C -0.035 4.035 6 C -0.207 4.207 7 C 0.338 3.662 8 O -0.388 6.388 9 N -0.302 5.302 10 C 0.054 3.946 11 C -0.246 4.246 12 C -0.105 4.105 13 C -0.247 4.247 14 C 0.117 3.883 15 C -0.493 4.493 16 H 0.096 0.904 17 C -0.140 4.140 18 N -0.427 5.427 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.202 4.202 24 C 0.180 3.820 25 F -0.085 7.085 26 C -0.223 4.223 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.235 0.765 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.140 0.860 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.351 -17.259 0.839 18.410 hybrid contribution -0.994 0.638 -0.565 1.309 sum -7.345 -16.621 0.274 18.173 Atomic orbital electron populations 1.23180 0.77526 1.04418 1.01965 1.86042 1.22072 1.26463 1.87698 1.18801 0.91340 0.84483 0.92288 1.21211 1.00751 0.91654 1.10992 1.21054 0.92351 0.98133 0.91956 1.20099 0.94158 0.93361 1.13053 1.17859 0.87170 0.83414 0.77787 1.90852 1.12938 1.86914 1.48063 1.43327 1.09985 1.04957 1.71927 1.17575 0.95375 0.83035 0.98650 1.20315 0.99771 0.97381 1.07113 1.20425 0.98005 0.92870 0.99154 1.21053 1.01930 0.96922 1.04762 1.17351 0.90151 0.91958 0.88838 1.19503 0.93487 1.03010 1.33314 0.90388 1.25868 0.96863 0.96171 0.95074 1.69807 1.04000 1.34217 1.34647 0.86376 0.77696 0.81110 0.81567 1.18885 1.20429 1.19040 1.21061 1.04067 0.91072 1.03966 1.17219 0.77581 0.92055 0.95190 1.91627 1.27525 1.96968 1.92354 1.20169 0.92476 0.97533 1.12101 0.92069 0.87858 0.92079 0.84133 0.84006 0.76457 0.88056 0.88956 0.88812 0.91044 0.85951 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.77 10.48 -18.83 -0.20 -2.97 16 3 C 0.18 1.82 6.69 -39.03 -0.26 1.56 16 4 C -0.23 -2.12 9.01 -39.49 -0.36 -2.48 16 5 C -0.02 -0.18 9.53 -39.22 -0.37 -0.56 16 6 C -0.20 -3.04 5.88 -104.91 -0.62 -3.65 16 7 C 0.55 10.64 7.49 -12.52 -0.09 10.54 16 8 O -0.51 -11.83 13.07 5.27 0.07 -11.76 16 9 N -0.66 -12.76 5.28 -10.88 -0.06 -12.82 16 10 C 0.15 3.45 6.25 -83.79 -0.52 2.93 16 11 C -0.22 -5.47 8.66 -39.09 -0.34 -5.81 16 12 C -0.09 -2.04 10.02 -39.69 -0.40 -2.44 16 13 C -0.23 -5.69 9.79 -38.84 -0.38 -6.07 16 14 C 0.12 3.20 5.57 -106.85 -0.59 2.61 16 15 C -0.46 -12.18 9.06 -37.74 -0.34 -12.52 16 16 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 17 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 18 N -0.80 -19.85 10.94 55.55 0.61 -19.24 16 19 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 23 C -0.18 -4.60 8.60 -38.68 -0.33 -4.93 16 24 C 0.20 2.92 7.28 -38.99 -0.28 2.64 16 25 F -0.11 -1.81 15.54 2.25 0.03 -1.77 16 26 C -0.20 -2.36 9.95 -39.43 -0.39 -2.75 16 27 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 30 H 0.14 0.89 6.27 -52.49 -0.33 0.56 16 31 H 0.14 1.33 6.41 -52.49 -0.34 0.99 16 32 H 0.40 6.38 6.85 -40.82 -0.28 6.10 16 33 H 0.10 2.46 6.47 -52.49 -0.34 2.12 16 34 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 37 H 0.12 3.13 6.17 -52.49 -0.32 2.80 16 38 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -31.59 330.92 -7.61 -39.20 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.64 Total: 9.06 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -4.38 Total: -18.02 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.55 Total: -32.06 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.13 Total: -14.73 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.59 -7.61 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313453155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.976 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds