Wall clock time and date at job start Tue Mar 31 2020 11:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35963 * 117.00509 * 2 1 4 4 C 1.38536 * 120.06900 * 359.97438 * 3 2 1 5 5 C 1.38436 * 119.99843 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.93349 * 179.97438 * 5 4 3 7 7 C 1.38491 * 120.13245 * 0.02562 * 5 4 3 8 8 C 1.38186 * 120.14692 * 359.67591 * 7 5 4 9 9 C 1.38747 * 119.99999 * 0.60116 * 8 7 5 10 10 N 1.40093 * 120.07088 * 179.69635 * 9 8 7 11 11 C 1.34773 * 119.99613 * 340.36314 * 10 9 8 12 12 O 1.21616 * 120.00541 * 354.35557 * 11 10 9 13 13 C 1.47599 * 119.99819 * 174.35163 * 11 10 9 14 14 C 1.40036 * 119.89585 * 180.02562 * 13 11 10 15 15 C 1.36300 * 120.10584 * 180.25418 * 14 13 11 16 16 C 1.40905 * 119.89025 * 359.50029 * 15 14 13 17 17 C 1.41082 * 120.10152 * 180.25181 * 16 15 14 18 18 H 1.08005 * 120.00051 * 205.71351 * 17 16 15 19 19 C 1.40230 * 120.00077 * 25.71413 * 17 16 15 20 20 N 1.30643 * 119.99855 * 17.19005 * 19 17 16 21 21 Si 1.86797 * 119.99807 * 197.18680 * 19 17 16 22 22 H 1.48495 * 109.47006 * 94.75180 * 21 19 17 23 23 H 1.48498 * 109.47070 * 214.75058 * 21 19 17 24 24 H 1.48501 * 109.47523 * 334.75128 * 21 19 17 25 25 C 1.40899 * 119.79396 * 0.52220 * 16 15 14 26 26 C 1.36297 * 119.89644 * 359.72695 * 25 16 15 27 27 H 1.09004 * 109.47147 * 60.00353 * 1 2 3 28 28 H 1.09002 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47453 * 300.00499 * 1 2 3 30 30 H 1.08007 * 119.99905 * 0.02562 * 4 3 2 31 31 H 1.08007 * 119.93130 * 179.97438 * 7 5 4 32 32 H 1.07997 * 120.00645 * 180.29669 * 8 7 5 33 33 H 0.96993 * 119.99741 * 160.36241 * 10 9 8 34 34 H 1.08004 * 119.94991 * 359.97438 * 14 13 11 35 35 H 1.07997 * 120.05603 * 179.75002 * 15 14 13 36 36 H 0.96996 * 120.00172 * 179.97438 * 20 19 17 37 37 H 1.08002 * 120.05162 * 179.71146 * 25 16 15 38 38 H 1.07999 * 119.95034 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2933 2.3742 -0.0005 5 6 1.9234 3.6069 -0.0011 6 9 1.1878 4.7400 -0.0021 7 6 3.3063 3.6807 -0.0016 8 6 4.0631 2.5245 0.0051 9 6 3.4376 1.2860 -0.0001 10 7 4.2034 0.1129 0.0003 11 6 5.4938 0.1504 -0.3867 12 8 5.9651 1.1788 -0.8332 13 6 6.3351 -1.0566 -0.2687 14 6 7.6758 -1.0150 -0.6710 15 6 8.4551 -2.1285 -0.5687 16 6 7.9126 -3.3198 -0.0473 17 6 8.7167 -4.4735 0.0656 18 1 8.2608 -5.4526 0.0564 19 6 10.1080 -4.3491 0.1897 20 7 10.6331 -3.2040 0.5357 21 14 11.2103 -5.8208 -0.1396 22 1 11.6829 -5.7801 -1.5468 23 1 12.3785 -5.7790 0.7762 24 1 10.4459 -7.0731 0.0899 25 6 6.5630 -3.3569 0.3557 26 6 5.7900 -2.2398 0.2449 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2146 2.3191 -0.0005 31 1 3.7946 4.6441 -0.0024 32 1 5.1414 2.5847 0.0096 33 1 3.8048 -0.7263 0.2791 34 1 8.0917 -0.1004 -1.0672 35 1 9.4879 -2.0966 -0.8829 36 1 11.5954 -3.1180 0.6219 37 1 6.1416 -4.2691 0.7516 38 1 4.7553 -2.2674 0.5531 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340037443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:28 Heat of formation + Delta-G solvation = -85.018947 kcal Electronic energy + Delta-G solvation = -24594.406161 eV Core-core repulsion = 20701.817821 eV Total energy + Delta-G solvation = -3892.588339 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.91628 -41.87328 -40.48422 -39.08996 -38.03908 -35.80962 -35.59393 -32.20501 -31.51516 -31.41040 -30.21347 -28.21145 -27.54516 -24.58065 -23.69422 -23.32326 -22.55040 -21.29496 -19.78067 -19.37317 -18.97012 -18.20958 -17.64052 -17.09263 -16.99729 -16.65197 -16.34113 -16.10917 -15.92965 -15.75056 -15.60036 -15.20879 -14.95554 -14.48059 -14.12492 -13.96135 -13.84874 -13.68458 -13.57664 -13.25344 -12.85735 -12.67639 -12.51477 -12.47357 -12.37097 -12.02495 -11.75012 -11.46588 -11.36567 -11.14957 -10.63077 -9.78688 -9.58902 -9.48733 -8.81835 -8.74277 -6.50128 -0.07239 0.17732 0.47095 1.14968 1.38373 1.42849 1.54354 2.00675 2.03270 2.15677 2.23007 2.54234 2.79342 3.20874 3.65162 3.67546 3.91037 3.94765 4.13161 4.29038 4.36202 4.39104 4.42289 4.44792 4.69197 4.76847 4.91175 4.95912 4.98093 5.03890 5.18444 5.21483 5.24070 5.42199 5.57689 5.71078 5.76511 5.92109 6.00003 6.18609 6.26949 6.52850 6.54955 6.74919 6.86978 7.24971 8.14543 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.002643 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.566599 B =10592.314084 C =11430.602822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.121 3.879 4 C -0.213 4.213 5 C 0.103 3.897 6 F -0.139 7.139 7 C -0.164 4.164 8 C -0.098 4.098 9 C 0.106 3.894 10 N -0.655 5.655 11 C 0.572 3.428 12 O -0.576 6.576 13 C -0.295 4.295 14 C -0.043 4.043 15 C -0.202 4.202 16 C 0.103 3.897 17 C -0.467 4.467 18 H 0.093 0.907 19 C 0.034 3.966 20 N -0.800 5.800 21 Si 0.989 3.011 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.251 1.251 25 C -0.244 4.244 26 C -0.037 4.037 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.172 0.828 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.421 0.579 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.296 0.704 37 H 0.117 0.883 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.085 4.422 0.810 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.073 3.927 4 C -0.233 4.233 5 C 0.083 3.917 6 F -0.118 7.118 7 C -0.183 4.183 8 C -0.119 4.119 9 C 0.009 3.991 10 N -0.299 5.299 11 C 0.368 3.632 12 O -0.460 6.460 13 C -0.300 4.300 14 C -0.063 4.063 15 C -0.221 4.221 16 C 0.100 3.900 17 C -0.494 4.494 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.424 5.424 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.174 1.174 25 C -0.263 4.263 26 C -0.056 4.056 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.189 0.811 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.260 0.740 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.464 5.029 0.594 16.272 hybrid contribution 0.374 -0.359 0.021 0.518 sum -15.090 4.670 0.615 15.809 Atomic orbital electron populations 1.23454 0.75563 1.06079 1.02673 1.86049 1.24156 1.25095 1.88649 1.18278 0.89296 0.85665 0.99477 1.21099 1.02076 0.89604 1.10524 1.17381 0.88979 0.81864 1.03490 1.91484 1.77092 1.49149 1.94034 1.21129 0.91833 1.00027 1.05331 1.21411 1.02272 0.89662 0.98513 1.17530 0.87924 0.87627 1.05973 1.43184 1.10689 1.10389 1.65614 1.18531 0.81016 0.88263 0.75364 1.90540 1.73903 1.33725 1.47806 1.18997 0.95126 0.94252 1.21579 1.20538 0.92860 0.97014 0.95882 1.20934 0.99828 0.94201 1.07159 1.18166 0.92607 0.93065 0.86200 1.20196 0.92225 0.94785 1.42212 0.88865 1.27021 1.00227 1.00393 0.90916 1.69788 1.15327 1.27835 1.29425 0.85068 0.77125 0.77667 0.79246 1.18704 1.19147 1.17427 1.20937 0.95401 0.99000 1.10964 1.20691 0.98477 0.91611 0.94796 0.91414 0.85930 0.91028 0.81068 0.82889 0.83153 0.73992 0.88505 0.87726 0.89267 0.86497 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.03 9.85 -93.13 -0.92 -7.95 16 3 C 0.12 3.04 6.70 22.60 0.15 3.19 16 4 C -0.21 -4.54 9.01 22.39 0.20 -4.33 16 5 C 0.10 2.45 7.30 22.38 0.16 2.62 16 6 F -0.14 -3.18 17.26 44.97 0.78 -2.41 16 7 C -0.16 -4.26 10.02 22.32 0.22 -4.04 16 8 C -0.10 -3.11 8.78 22.38 0.20 -2.91 16 9 C 0.11 3.30 6.52 38.21 0.25 3.55 16 10 N -0.66 -22.04 5.27 -305.86 -1.61 -23.65 16 11 C 0.57 23.68 7.61 86.71 0.66 24.34 16 12 O -0.58 -26.33 13.22 -4.08 -0.05 -26.38 16 13 C -0.30 -13.15 5.89 -19.94 -0.12 -13.27 16 14 C -0.04 -2.14 9.52 22.25 0.21 -1.93 16 15 C -0.20 -10.45 8.62 22.47 0.19 -10.26 16 16 C 0.10 5.21 5.56 -21.28 -0.12 5.09 16 17 C -0.47 -22.93 9.04 23.45 0.21 -22.71 16 18 H 0.09 4.27 7.91 -2.91 -0.02 4.25 16 19 C 0.03 1.55 5.14 85.35 0.44 1.99 16 20 N -0.80 -39.19 10.98 21.87 0.24 -38.95 16 21 Si 0.99 34.59 29.59 68.60 2.03 36.62 16 22 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 23 H -0.27 -8.94 7.11 99.48 0.71 -8.24 16 24 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 25 C -0.24 -10.86 9.73 22.47 0.22 -10.65 16 26 C -0.04 -1.50 9.47 22.25 0.21 -1.29 16 27 H 0.07 0.66 7.66 -2.38 -0.02 0.64 16 28 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.64 7.66 -2.38 -0.02 0.62 16 30 H 0.17 2.49 6.30 -2.91 -0.02 2.47 16 31 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.15 5.51 5.41 -2.91 -0.02 5.49 16 33 H 0.42 12.32 6.26 -92.71 -0.58 11.74 16 34 H 0.10 4.72 7.63 -2.91 -0.02 4.70 16 35 H 0.10 5.63 6.21 -2.91 -0.02 5.61 16 36 H 0.30 12.99 8.29 -92.71 -0.77 12.22 16 37 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 38 H 0.13 4.13 6.39 -2.91 -0.02 4.11 16 Total: -1.00 -60.73 330.22 5.22 -55.50 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.55 Total: 36.53 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 4.21 Total: -29.32 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -1.37 Total: -62.60 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.97 Total: -34.33 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Total: -60.73 5.22 -55.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340037443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.517 kcal (2) G-P(sol) polarization free energy of solvation -60.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds