Wall clock time and date at job start Tue Mar 31 2020 10:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47050 * 2 1 4 4 H 1.09001 * 109.47124 * 305.00249 * 3 2 1 5 5 N 1.46503 * 109.46957 * 65.00180 * 3 2 1 6 6 C 1.34783 * 119.99939 * 275.27188 * 5 3 2 7 7 O 1.21583 * 119.99829 * 359.72682 * 6 5 3 8 8 C 1.47640 * 120.00076 * 179.72420 * 6 5 3 9 9 C 1.40009 * 119.89654 * 359.73167 * 8 6 5 10 10 C 1.36316 * 120.10747 * 179.71832 * 9 8 6 11 11 C 1.40890 * 119.89010 * 0.57069 * 10 9 8 12 12 C 1.41110 * 120.10405 * 179.67624 * 11 10 9 13 13 H 1.07997 * 119.99630 * 155.08566 * 12 11 10 14 14 C 1.40224 * 119.99866 * 335.08743 * 12 11 10 15 15 N 1.30645 * 120.00062 * 342.20485 * 14 12 11 16 16 Si 1.86803 * 120.00004 * 162.20237 * 14 12 11 17 17 H 1.48503 * 109.46948 * 94.66066 * 16 14 12 18 18 H 1.48497 * 109.47395 * 214.66224 * 16 14 12 19 19 H 1.48503 * 109.47053 * 334.66459 * 16 14 12 20 20 C 1.40891 * 119.79259 * 359.70352 * 11 10 9 21 21 C 1.36315 * 119.89194 * 359.97438 * 20 11 10 22 22 C 1.50700 * 109.47235 * 184.99952 * 3 2 1 23 23 C 1.33389 * 125.20323 * 100.00047 * 22 3 2 24 24 C 1.38425 * 114.91675 * 179.97438 * 23 22 3 25 25 C 1.33387 * 114.92437 * 0.02562 * 24 23 22 26 26 S 1.75888 * 109.59359 * 359.75264 * 25 24 23 27 27 H 1.09002 * 109.47299 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47497 * 300.00096 * 1 2 3 29 29 H 1.08996 * 109.47193 * 60.00231 * 1 2 3 30 30 H 1.09001 * 109.47152 * 240.00241 * 2 1 3 31 31 H 1.08999 * 109.46822 * 120.00129 * 2 1 3 32 32 H 0.96996 * 120.00669 * 95.00002 * 5 3 2 33 33 H 1.08005 * 119.94656 * 359.97438 * 9 8 6 34 34 H 1.07997 * 120.05359 * 180.25138 * 10 9 8 35 35 H 0.97003 * 119.99596 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.05134 * 179.97438 * 20 11 10 37 37 H 1.07995 * 119.94712 * 180.02562 * 21 20 11 38 38 H 1.07996 * 122.53914 * 359.97438 * 23 22 3 39 39 H 1.08005 * 122.53412 * 180.02562 * 24 23 22 40 40 H 1.08001 * 125.20272 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4330 2.6595 1.3689 7 8 -0.3435 2.6274 0.4339 8 6 0.0401 3.3142 2.6326 9 6 0.9339 3.3450 3.7098 10 6 0.5778 3.9533 4.8766 11 6 -0.6965 4.5412 5.0015 12 6 -1.0724 5.1661 6.2095 13 1 -1.8273 5.9385 6.2058 14 6 -0.4657 4.7843 7.4147 15 7 0.1722 3.6469 7.4933 16 14 -0.5697 5.9020 8.9079 17 1 -1.7161 5.4888 9.7566 18 1 0.6879 5.8003 9.6909 19 1 -0.7638 7.3055 8.4630 20 6 -1.5946 4.5026 3.9166 21 6 -1.2271 3.8978 2.7516 22 6 3.5418 1.4443 -0.1238 23 6 4.2202 1.6657 -1.2508 24 6 5.5976 1.6179 -1.1213 25 6 6.0377 1.3573 0.1106 26 16 4.6684 1.1616 1.1970 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 2.2718 2.1231 1.9979 33 1 1.9086 2.8896 3.6149 34 1 1.2694 3.9801 5.7056 35 1 0.5922 3.3831 8.3269 36 1 -2.5726 4.9516 4.0079 37 1 -1.9146 3.8681 1.9193 38 1 3.7319 1.8668 -2.1928 39 1 6.2653 1.7794 -1.9547 40 1 7.0761 1.2818 0.3978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340095228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:17 Heat of formation + Delta-G solvation = -9.327489 kcal Electronic energy + Delta-G solvation = -22927.358452 eV Core-core repulsion = 19604.265517 eV Total energy + Delta-G solvation = -3323.092935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08350 -39.29531 -38.62908 -36.58350 -35.66864 -33.55978 -31.81421 -31.31549 -30.88033 -27.95680 -26.75325 -24.24137 -23.88425 -22.84626 -22.11762 -21.49437 -20.00675 -19.37595 -18.96446 -17.76488 -17.30633 -16.77156 -16.39385 -16.31686 -15.74905 -15.54205 -15.07235 -14.61525 -14.44040 -14.37685 -14.18517 -13.85415 -13.69975 -13.59407 -13.45211 -13.19565 -12.91973 -12.83488 -12.67164 -12.52534 -12.36057 -12.33382 -11.89733 -11.77380 -11.60296 -11.37783 -11.11461 -10.67160 -10.09616 -9.62226 -9.57835 -9.43340 -9.40774 -8.79614 -6.48405 0.02370 0.44477 0.63139 1.07114 1.14564 1.38492 1.42417 1.54935 1.79823 2.12611 2.18575 2.39700 2.79079 3.50359 3.68852 4.03250 4.10226 4.22723 4.26480 4.28159 4.44813 4.46233 4.55159 4.68347 4.73128 4.87150 4.91730 4.98307 5.02585 5.12668 5.15637 5.17784 5.29363 5.34669 5.44819 5.49409 5.57605 5.63092 5.81689 5.93721 5.99214 6.22319 6.53528 6.63798 6.76910 6.88445 7.43312 8.15809 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.003295 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.097790 B = 8495.362612 C = 9594.973619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.220 3.780 4 H 0.090 0.910 5 N -0.725 5.725 6 C 0.578 3.422 7 O -0.585 6.585 8 C -0.294 4.294 9 C -0.056 4.056 10 C -0.197 4.197 11 C 0.103 3.897 12 C -0.474 4.474 13 H 0.086 0.914 14 C 0.038 3.962 15 N -0.798 5.798 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.262 1.262 19 H -0.257 1.257 20 C -0.253 4.253 21 C -0.029 4.029 22 C -0.202 4.202 23 C -0.127 4.127 24 C -0.139 4.139 25 C -0.206 4.206 26 S 0.082 5.918 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.399 0.601 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.297 0.703 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.168 0.832 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.265 -5.756 -9.345 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.114 3.886 4 H 0.108 0.892 5 N -0.377 5.377 6 C 0.372 3.628 7 O -0.469 6.469 8 C -0.299 4.299 9 C -0.075 4.075 10 C -0.216 4.216 11 C 0.100 3.900 12 C -0.501 4.501 13 H 0.104 0.896 14 C -0.181 4.181 15 N -0.422 5.422 16 Si 0.807 3.193 17 H -0.186 1.186 18 H -0.186 1.186 19 H -0.181 1.181 20 C -0.273 4.273 21 C -0.049 4.049 22 C -0.320 4.320 23 C -0.158 4.158 24 C -0.169 4.169 25 C -0.342 4.342 26 S 0.346 5.654 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.236 0.764 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.732 -6.271 -8.308 15.684 hybrid contribution 0.117 0.672 -0.354 0.769 sum 11.850 -5.599 -8.662 15.710 Atomic orbital electron populations 1.21735 0.95587 1.00832 1.01613 1.21929 0.96012 0.94686 1.03275 1.19345 0.87303 0.94261 0.87720 0.89240 1.45978 1.16507 1.58862 1.16378 1.18226 0.80920 0.76465 0.87238 1.90625 1.52493 1.62103 1.41644 1.19201 0.98692 1.16713 0.95266 1.20679 0.97391 0.96863 0.92579 1.20986 0.97160 1.06028 0.97420 1.18120 0.90982 0.88231 0.92706 1.20118 1.19798 1.18257 0.91963 0.89628 1.26928 0.91835 0.95682 1.03640 1.69767 1.23835 1.18787 1.29778 0.85112 0.79294 0.78984 0.75956 1.18577 1.18576 1.18072 1.20868 0.99887 1.10821 0.95690 1.20494 0.94475 0.93790 0.96102 1.24576 0.97936 1.11411 0.98029 1.20412 0.94338 1.02114 0.98937 1.20443 0.94966 1.03026 0.98433 1.26008 1.02873 1.08932 0.96343 1.84488 0.97542 1.70480 1.12937 0.91999 0.94944 0.93083 0.88919 0.91699 0.76405 0.86778 0.86971 0.89190 0.87732 0.87661 0.82839 0.81485 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.51 71.98 0.61 -3.61 16 2 C -0.12 -3.07 5.59 30.59 0.17 -2.90 16 3 C 0.22 6.16 2.69 44.24 0.12 6.28 16 4 H 0.09 2.73 7.56 -2.39 -0.02 2.72 16 5 N -0.72 -24.33 4.97 -449.15 -2.23 -26.56 16 6 C 0.58 24.07 6.32 86.73 0.55 24.61 16 7 O -0.59 -26.40 13.44 -3.98 -0.05 -26.45 16 8 C -0.29 -13.54 5.89 -19.93 -0.12 -13.66 16 9 C -0.06 -2.53 9.47 22.25 0.21 -2.32 16 10 C -0.20 -9.86 8.63 22.47 0.19 -9.66 16 11 C 0.10 5.38 5.57 -21.28 -0.12 5.26 16 12 C -0.47 -24.07 9.04 23.46 0.21 -23.86 16 13 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 14 C 0.04 1.78 5.13 85.35 0.44 2.22 16 15 N -0.80 -38.35 10.97 21.87 0.24 -38.11 16 16 Si 0.99 34.86 29.60 68.60 2.03 36.90 16 17 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 18 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 19 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 20 C -0.25 -12.62 9.73 22.47 0.22 -12.40 16 21 C -0.03 -1.41 9.52 22.25 0.21 -1.20 16 22 C -0.20 -4.74 5.45 24.59 0.13 -4.61 16 23 C -0.13 -2.48 10.04 21.22 0.21 -2.27 16 24 C -0.14 -2.24 10.18 21.22 0.22 -2.03 16 25 C -0.21 -3.42 11.23 66.72 0.75 -2.67 16 26 S 0.08 1.77 22.30 -56.49 -1.26 0.51 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.03 1.19 5.63 -2.39 -0.01 1.17 16 29 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.40 12.65 5.67 -92.71 -0.53 12.12 16 33 H 0.11 4.37 6.37 -2.91 -0.02 4.35 16 34 H 0.11 5.71 6.17 -2.91 -0.02 5.69 16 35 H 0.30 12.65 8.29 -92.71 -0.77 11.88 16 36 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 37 H 0.11 4.87 7.63 -2.91 -0.02 4.85 16 38 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -59.60 345.33 3.28 -56.32 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: 0.54 Total: 40.22 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 4.01 Total: -42.82 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -1.99 Total: -64.68 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.05 Total: -26.45 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.90 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.26 Total: 0.51 kcal Total: -59.60 3.28 -56.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340095228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.990 kcal (2) G-P(sol) polarization free energy of solvation -59.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds