Wall clock time and date at job start Tue Mar 31 2020 11:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99767 * 2 1 4 4 C 1.53001 * 109.47128 * 184.93693 * 3 2 1 5 5 N 1.46905 * 109.46937 * 68.54662 * 4 3 2 6 6 C 1.46904 * 111.00072 * 293.56602 * 5 4 3 7 7 C 1.52993 * 109.47141 * 296.22129 * 6 5 4 8 8 C 1.53001 * 109.46830 * 180.02562 * 7 6 5 9 9 S 1.81000 * 109.47294 * 179.97438 * 8 7 6 10 10 C 1.76198 * 100.00494 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99469 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00283 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99858 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99941 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47246 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47282 * 120.00036 * 14 12 10 17 17 H 1.48503 * 109.46856 * 240.00042 * 14 12 10 18 18 C 1.46895 * 110.99814 * 57.52521 * 5 4 3 19 19 C 1.50700 * 109.47275 * 65.19111 * 18 5 4 20 20 C 1.33393 * 125.20412 * 94.20212 * 19 18 5 21 21 C 1.38418 * 114.92131 * 179.97438 * 20 19 18 22 22 C 1.33392 * 114.92193 * 359.97438 * 21 20 19 23 23 S 1.75883 * 125.20212 * 273.89558 * 19 18 5 24 24 H 1.09002 * 109.46696 * 184.98714 * 1 2 3 25 25 H 1.09002 * 109.47032 * 304.98188 * 1 2 3 26 26 H 1.08995 * 109.47383 * 64.98421 * 1 2 3 27 27 H 1.09001 * 109.47058 * 64.93328 * 3 2 1 28 28 H 1.09000 * 109.46696 * 304.93165 * 3 2 1 29 29 H 1.09002 * 109.46692 * 308.54988 * 4 3 2 30 30 H 1.08993 * 109.47025 * 188.55115 * 4 3 2 31 31 H 1.09004 * 109.46803 * 56.22120 * 6 5 4 32 32 H 1.08998 * 109.46945 * 176.21904 * 6 5 4 33 33 H 1.09004 * 109.47264 * 299.99708 * 7 6 5 34 34 H 1.08998 * 109.47385 * 60.00044 * 7 6 5 35 35 H 1.08998 * 109.47077 * 299.99463 * 8 7 6 36 36 H 1.08998 * 109.47288 * 59.99755 * 8 7 6 37 37 H 0.97001 * 120.00029 * 179.97438 * 13 12 10 38 38 H 1.09009 * 109.46907 * 185.19209 * 18 5 4 39 39 H 1.08996 * 109.47376 * 305.18562 * 18 5 4 40 40 H 1.07996 * 122.53684 * 359.95586 * 20 19 18 41 41 H 1.08005 * 122.53920 * 180.02562 * 21 20 19 42 42 H 1.08000 * 125.20501 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1870 -0.1241 5 7 3.8752 0.6894 -1.4627 6 6 3.4088 -0.6913 -1.6473 7 6 4.1370 -1.6112 -0.6655 8 6 3.6517 -3.0494 -0.8583 9 16 4.5138 -4.1379 0.3028 10 6 3.7829 -5.6828 -0.1259 11 1 3.0384 -5.7298 -0.9069 12 6 4.1647 -6.8396 0.5395 13 7 5.0724 -6.7823 1.4910 14 14 3.3904 -8.4775 0.0845 15 1 2.4049 -8.2729 -1.0075 16 1 4.4476 -9.4152 -0.3715 17 1 2.7024 -9.0463 1.2713 18 6 3.3366 1.5712 -2.5068 19 6 4.0069 2.9182 -2.4217 20 6 5.0769 3.2906 -3.1258 21 6 5.5173 4.5796 -2.8798 22 6 4.8045 5.2543 -1.9764 23 16 3.4933 4.2425 -1.3844 24 1 -0.3633 -1.0238 0.0893 25 1 -0.3633 0.5892 0.8420 26 1 -0.3634 0.4345 -0.9312 27 1 1.7602 1.8145 0.9309 28 1 1.6203 1.8767 -0.8425 29 1 3.9034 0.4926 0.6288 30 1 3.9849 2.1660 0.0278 31 1 2.3355 -0.7400 -1.4630 32 1 3.6170 -1.0117 -2.6682 33 1 5.2103 -1.5626 -0.8498 34 1 3.9288 -1.2909 0.3553 35 1 2.5785 -3.0984 -0.6742 36 1 3.8603 -3.3695 -1.8791 37 1 5.3390 -7.5907 1.9562 38 1 3.5262 1.1322 -3.4865 39 1 2.2626 1.6900 -2.3637 40 1 5.5630 2.6358 -3.8338 41 1 6.3726 5.0070 -3.3820 42 1 5.0003 6.2681 -1.6598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342151959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:29 Heat of formation + Delta-G solvation = -8.316335 kcal Electronic energy + Delta-G solvation = -21690.806020 eV Core-core repulsion = 18503.200883 eV Total energy + Delta-G solvation = -3187.605137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.107 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.41134 -37.91587 -36.58635 -33.15740 -32.34990 -30.84326 -29.20575 -26.55799 -26.40931 -25.49074 -24.20799 -23.57679 -21.65004 -20.02605 -19.36171 -17.46181 -17.20306 -16.90015 -16.67218 -15.69879 -15.49232 -15.14987 -14.75296 -14.70069 -14.24219 -13.94511 -13.54147 -13.01540 -12.92058 -12.79098 -12.64129 -12.55304 -12.16888 -11.90123 -11.75452 -11.67746 -11.48272 -11.11215 -11.08076 -11.02862 -10.93290 -10.64454 -10.54323 -10.20535 -9.60480 -9.43942 -8.99394 -8.88674 -8.63893 -8.18285 -8.12987 -6.41949 -6.15561 -3.83956 0.78718 1.41887 1.78784 2.56680 3.25038 3.27271 3.34224 3.62269 3.69955 4.09518 4.30671 4.56200 4.81185 4.84471 4.91084 5.08935 5.19868 5.20204 5.22752 5.27421 5.30620 5.34719 5.41482 5.47383 5.53302 5.60152 5.67898 5.82717 5.94421 5.96185 6.02609 6.11338 6.17652 6.30419 6.34251 6.54248 6.77921 6.89353 7.02897 7.10708 7.18052 7.67912 8.44356 9.30761 10.92736 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.002671 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.737222 B =10479.284996 C =11113.579917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.020 3.980 4 C 0.043 3.957 5 N -0.524 5.524 6 C 0.047 3.953 7 C -0.086 4.086 8 C -0.106 4.106 9 S -0.136 6.136 10 C -0.512 4.512 11 H 0.071 0.929 12 C 0.069 3.931 13 N -0.870 5.870 14 Si 0.917 3.083 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.117 3.883 19 C -0.159 4.159 20 C -0.125 4.125 21 C -0.131 4.131 22 C -0.217 4.217 23 S 0.082 5.918 24 H 0.088 0.912 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.265 0.735 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 24.646 -7.321 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C -0.059 4.059 4 C -0.086 4.086 5 N -0.247 5.247 6 C -0.081 4.081 7 C -0.125 4.125 8 C -0.256 4.256 9 S 0.093 5.907 10 C -0.660 4.660 11 H 0.090 0.910 12 C -0.139 4.139 13 N -0.506 5.506 14 Si 0.743 3.257 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.013 4.013 19 C -0.277 4.277 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.353 4.353 23 S 0.345 5.655 24 H 0.107 0.893 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.238 24.811 -5.414 25.929 hybrid contribution -1.299 -1.157 -2.069 2.703 sum -6.537 23.654 -7.483 25.656 Atomic orbital electron populations 1.22765 0.81792 1.03043 0.99413 1.88129 1.19210 1.26788 1.94721 1.23371 0.96506 0.85776 1.00206 1.22552 0.91114 1.02402 0.92505 1.62235 1.58852 1.02394 1.01247 1.22520 1.00082 0.85804 0.99645 1.21182 0.99969 0.92260 0.99059 1.23176 1.02484 0.97378 1.02532 1.84610 1.55712 1.02350 1.48043 1.22736 1.27129 0.92302 1.23863 0.91039 1.25007 0.95127 0.99036 0.94732 1.70040 1.29440 1.28862 1.22285 0.86139 0.78984 0.82153 0.78391 1.19658 1.20627 1.20656 1.20630 0.95793 0.87700 0.97142 1.24400 1.01925 0.99004 1.02358 1.20146 0.96690 0.96462 1.02292 1.20202 1.01682 0.94638 0.99687 1.25594 1.01134 1.04095 1.04457 1.84254 1.31693 1.05726 1.43869 0.89347 0.94230 0.94597 0.92907 0.93496 0.88495 0.89173 0.91111 0.91733 0.91590 0.91483 0.92244 0.92568 0.92476 0.88874 0.93469 0.84108 0.84365 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.37 -4.85 7.49 -35.23 -0.26 -5.11 16 3 C 0.02 0.22 5.76 37.16 0.21 0.43 16 4 C 0.04 0.51 5.31 -3.82 -0.02 0.49 16 5 N -0.52 -6.61 4.73 -236.07 -1.12 -7.72 16 6 C 0.05 0.68 4.51 -3.83 -0.02 0.66 16 7 C -0.09 -1.51 5.10 -26.73 -0.14 -1.65 16 8 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 9 S -0.14 -3.67 21.44 -107.50 -2.30 -5.97 16 10 C -0.51 -15.05 9.50 30.94 0.29 -14.75 16 11 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 12 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 13 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 14 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.12 1.23 5.17 -4.98 -0.03 1.21 16 19 C -0.16 -1.61 5.32 -36.00 -0.19 -1.80 16 20 C -0.13 -1.21 10.05 -41.21 -0.41 -1.62 16 21 C -0.13 -1.12 10.18 -41.21 -0.42 -1.54 16 22 C -0.22 -1.79 11.23 29.04 0.33 -1.46 16 23 S 0.08 0.73 21.62 -107.50 -2.32 -1.59 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.47 5.81 -51.93 -0.30 0.17 16 29 H 0.10 1.32 6.11 -51.93 -0.32 1.00 16 30 H 0.09 1.00 5.99 -51.93 -0.31 0.69 16 31 H 0.07 1.04 5.06 -51.93 -0.26 0.78 16 32 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.22 6.36 -51.93 -0.33 0.89 16 35 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 36 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 0.92 7.98 -51.92 -0.41 0.51 16 39 H 0.05 0.48 5.80 -51.93 -0.30 0.18 16 40 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 42 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -32.34 362.03 -10.43 -42.77 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.43 Total: -0.17 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 0.84 Total: -18.77 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: -0.38 Total: -33.53 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.26 Total: -5.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -4.63 Total: -7.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.34 -10.43 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342151959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.451 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds