Wall clock time and date at job start Tue Mar 31 2020 11:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48506 * 109.47218 * 240.00196 * 3 2 1 5 5 H 1.48500 * 109.47222 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46985 * 120.00533 * 3 2 1 7 7 C 1.37877 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47000 * 179.97438 * 10 9 7 12 12 S 1.81398 * 109.47159 * 180.02562 * 11 10 9 13 13 C 1.76201 * 103.00147 * 180.02562 * 12 11 10 14 14 N 1.31396 * 125.37424 * 359.97438 * 13 12 11 15 15 N 1.40434 * 107.04607 * 180.02562 * 14 13 12 16 16 H 0.96995 * 126.86905 * 180.02562 * 15 14 13 17 17 C 1.36056 * 106.26255 * 359.97438 * 15 14 13 18 18 C 1.46754 * 126.13205 * 179.97438 * 17 15 14 19 19 C 1.34567 * 120.00019 * 174.08979 * 18 17 15 20 20 C 1.47292 * 119.99874 * 348.33182 * 19 18 17 21 21 C 1.39792 * 120.16484 * 134.42134 * 20 19 18 22 22 C 1.37902 * 119.83079 * 179.97438 * 21 20 19 23 23 C 1.38390 * 120.16568 * 359.97438 * 22 21 20 24 24 C 1.38385 * 120.33801 * 0.02562 * 23 22 21 25 25 C 1.37906 * 120.16814 * 0.02562 * 24 23 22 26 26 N 1.32199 * 107.73276 * 0.24281 * 17 15 14 27 27 H 0.96995 * 120.00445 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46940 * 59.99786 * 9 7 2 29 29 H 1.08997 * 109.47281 * 300.00531 * 9 7 2 30 30 H 1.08999 * 109.47181 * 60.00370 * 10 9 7 31 31 H 1.09002 * 109.47088 * 299.99784 * 10 9 7 32 32 H 1.09006 * 109.46993 * 59.99831 * 11 10 9 33 33 H 1.08997 * 109.47374 * 300.00487 * 11 10 9 34 34 H 1.07996 * 120.00466 * 354.09080 * 18 17 15 35 35 H 1.07995 * 119.99953 * 168.33175 * 19 18 17 36 36 H 1.08001 * 120.07972 * 359.97438 * 21 20 19 37 37 H 1.07996 * 119.91529 * 179.97438 * 22 21 20 38 38 H 1.08005 * 119.82679 * 179.74898 * 23 22 21 39 39 H 1.08003 * 119.91637 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.08794 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 0.0001 12 16 2.6593 -6.3658 0.0009 13 6 1.6120 -7.7828 0.0008 14 7 0.2983 -7.7577 0.0008 15 7 -0.1390 -9.0923 0.0013 16 1 -1.0576 -9.4037 0.0010 17 6 0.9836 -9.8610 0.0010 18 6 1.0279 -11.3278 0.0019 19 6 2.2068 -11.9655 -0.1184 20 6 3.4136 -11.2153 -0.5063 21 6 4.6145 -11.4122 0.1816 22 6 5.7402 -10.7066 -0.1877 23 6 5.6833 -9.8058 -1.2367 24 6 4.4982 -9.6054 -1.9225 25 6 3.3637 -10.3029 -1.5642 26 7 2.0273 -9.0495 0.0057 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8720 -3.6043 0.8895 31 1 2.8721 -3.6042 -0.8906 32 1 0.8534 -5.0451 -0.8897 33 1 0.8540 -5.0446 0.8902 34 1 0.1144 -11.8957 0.0992 35 1 2.2681 -13.0272 0.0694 36 1 4.6604 -12.1152 1.0002 37 1 6.6686 -10.8573 0.3431 38 1 6.5674 -9.2530 -1.5187 39 1 4.4616 -8.9010 -2.7404 40 1 2.4396 -10.1458 -2.1005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345077923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:36 Heat of formation + Delta-G solvation = 102.468700 kcal Electronic energy + Delta-G solvation = -22120.744265 eV Core-core repulsion = 18834.791927 eV Total energy + Delta-G solvation = -3285.952338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.95672 -39.83658 -36.41188 -35.77881 -34.09446 -33.64715 -32.15498 -31.50541 -30.06472 -29.39558 -25.53449 -24.94809 -24.23256 -23.22867 -22.77326 -21.96954 -20.41098 -19.17485 -18.52279 -17.53016 -17.45465 -16.76458 -16.60574 -16.39687 -16.17454 -15.79099 -15.47250 -14.93194 -14.72407 -14.47354 -14.16178 -13.77928 -13.72523 -13.58951 -13.31931 -12.94620 -12.85198 -12.74574 -12.44385 -12.09248 -11.88967 -11.82896 -11.80635 -11.66466 -11.48302 -11.37861 -11.23801 -11.04344 -10.56036 -10.27289 -9.54704 -8.94568 -8.75605 -8.20740 -6.32269 -0.31000 0.11144 0.58422 0.72741 1.08937 1.26368 1.41192 1.44488 1.52324 1.86257 2.08513 2.41561 3.11888 3.12809 3.31847 3.68176 3.92723 3.94226 4.01605 4.15394 4.23757 4.38126 4.49525 4.53740 4.70503 4.76240 4.78834 4.90712 4.93086 5.01789 5.11157 5.17019 5.20656 5.30845 5.41963 5.47954 5.65509 5.73034 5.78564 5.81240 5.82426 6.13542 6.20691 6.28466 6.82365 6.83509 7.37061 8.91166 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002594 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.605035 B =10793.248572 C =11859.332392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.033 3.967 10 C -0.081 4.081 11 C -0.091 4.091 12 S 0.011 5.989 13 C 0.196 3.804 14 N -0.347 5.347 15 N -0.470 5.470 16 H 0.456 0.544 17 C 0.319 3.681 18 C -0.127 4.127 19 C -0.016 4.016 20 C -0.083 4.083 21 C -0.102 4.102 22 C -0.140 4.140 23 C -0.118 4.118 24 C -0.143 4.143 25 C -0.050 4.050 26 N -0.509 5.509 27 H 0.264 0.736 28 H -0.005 1.005 29 H -0.005 1.005 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.188 0.812 35 H 0.183 0.817 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -30.900 -0.705 31.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.006 4.006 10 C -0.120 4.120 11 C -0.241 4.241 12 S 0.240 5.760 13 C -0.194 4.194 14 N -0.182 5.182 15 N -0.191 5.191 16 H 0.305 0.695 17 C 0.044 3.956 18 C -0.148 4.148 19 C -0.039 4.039 20 C -0.083 4.083 21 C -0.120 4.120 22 C -0.158 4.158 23 C -0.136 4.136 24 C -0.162 4.162 25 C -0.069 4.069 26 N -0.239 5.239 27 H 0.073 0.927 28 H 0.013 0.987 29 H 0.013 0.987 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.205 0.795 35 H 0.200 0.800 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.130 0.870 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.315 -30.125 -0.689 30.787 hybrid contribution -2.144 1.026 -0.112 2.380 sum 4.171 -29.099 -0.801 29.407 Atomic orbital electron populations 1.70090 1.07876 1.27932 1.51538 1.25994 0.95767 1.03441 0.94612 0.85476 0.78251 0.77892 0.79305 1.19035 1.20880 1.19060 1.21644 0.93748 0.92037 1.50813 0.91748 1.18949 0.94108 0.92308 0.95243 1.21207 0.98173 0.90412 1.02203 1.23602 1.00100 0.95014 1.05336 1.85455 1.07847 0.90246 1.92465 1.26107 0.92650 0.98663 1.01960 1.78387 1.11609 0.98247 1.29970 1.48100 1.10648 1.02881 1.57442 0.69520 1.23662 0.81624 0.95681 0.94605 1.21486 1.01285 0.83749 1.08247 1.22735 0.89673 1.00965 0.90514 1.19098 0.94466 0.97980 0.96742 1.21435 0.91650 0.99765 0.99198 1.21248 0.99372 0.97449 0.97759 1.21371 0.97940 0.98176 0.96134 1.21043 0.93784 1.00186 1.01139 1.20870 0.96367 0.93628 0.96042 1.71339 1.29040 0.97758 1.25716 0.92715 0.98656 0.98693 0.91593 0.91527 0.90225 0.90301 0.79474 0.79988 0.83956 0.84590 0.85525 0.87026 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.78 4.97 29.85 0.15 1.92 16 10 C -0.08 -3.43 5.16 30.59 0.16 -3.27 16 11 C -0.09 -3.46 5.54 71.98 0.40 -3.06 16 12 S 0.01 0.39 22.16 -56.49 -1.25 -0.86 16 13 C 0.20 6.48 8.25 180.54 1.49 7.97 16 14 N -0.35 -11.16 12.33 -58.73 -0.72 -11.89 16 15 N -0.47 -10.36 7.52 -52.12 -0.39 -10.75 16 16 H 0.46 6.20 8.96 -213.11 -1.91 4.29 16 17 C 0.32 6.80 6.96 136.11 0.95 7.74 16 18 C -0.13 -1.39 10.09 23.66 0.24 -1.15 16 19 C -0.02 -0.17 9.79 23.81 0.23 0.06 16 20 C -0.08 -1.49 4.55 -20.15 -0.09 -1.58 16 21 C -0.10 -1.73 9.79 22.57 0.22 -1.51 16 22 C -0.14 -2.57 10.03 22.23 0.22 -2.35 16 23 C -0.12 -2.48 10.04 22.34 0.22 -2.26 16 24 C -0.14 -3.37 10.03 22.23 0.22 -3.15 16 25 C -0.05 -1.13 6.53 22.57 0.15 -0.98 16 26 N -0.51 -14.43 6.87 -190.50 -1.31 -15.74 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16 35 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 36 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.11 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.09 2.24 7.23 -2.91 -0.02 2.22 16 Total: -1.00 -75.10 358.78 3.03 -72.07 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -0.86 Total: 10.13 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 5.26 Total: -32.28 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -2.14 Total: -95.74 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.25 Total: -0.86 kcal Total: -75.10 3.03 -72.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345077923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.540 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds